RNA–Protein interactions for RNA: ENST00000475973.1

UBR4-212, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 600 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-212ENST00000475973 CHIC1Q5VXU3 224 aa17.1■□□□□ 0.33
UBR4-212ENST00000475973 AEBP2Q6ZN18 517 aaPredicted RBP17.06■□□□□ 0.32
UBR4-212ENST00000475973 NISCHQ9Y2I1 1504 aa15.14■□□□□ 0.01
UBR4-212ENST00000475973 PHF23Q9BUL5 403 aaPredicted RBP15.1■□□□□ 0.01
UBR4-212ENST00000475973 SENP3Q9H4L4 574 aaPredicted RBP14.39□□□□□ -0.11
UBR4-212ENST00000475973 PLPPR3Q6T4P5 718 aa14.08□□□□□ -0.16
UBR4-212ENST00000475973 CCDC180Q9P1Z9 1646 aa13.55□□□□□ -0.24
UBR4-212ENST00000475973 ABCC9O60706 1549 aa13.49□□□□□ -0.25
UBR4-212ENST00000475973 FOXD1Q16676 465 aa13.31□□□□□ -0.28
UBR4-212ENST00000475973 ADRA2BP18089 450 aa13.18□□□□□ -0.3
UBR4-212ENST00000475973 PPP6R1Q9UPN7 881 aa13.18□□□□□ -0.3
UBR4-212ENST00000475973 RB1CC1Q8TDY2 1594 aa12.89□□□□□ -0.35
UBR4-212ENST00000475973 NACADO15069 1562 aa12.81□□□□□ -0.36
UBR4-212ENST00000475973 DCAF8L2P0C7V8 631 aa12.76□□□□□ -0.37
UBR4-212ENST00000475973 MYO15BQ96JP2 1530 aa12.69□□□□□ -0.38
UBR4-212ENST00000475973 KCNA4P22459 653 aa12.68□□□□□ -0.38
UBR4-212ENST00000475973 PIAS4Q8N2W9 510 aaPredicted RBP12.63□□□□□ -0.39
UBR4-212ENST00000475973 ZCCHC6Q5VYS8 1495 aaKnown RBP12.59□□□□□ -0.39
UBR4-212ENST00000475973 DCAF1Q9Y4B6 1507 aa12.54□□□□□ -0.4
UBR4-212ENST00000475973 PABPN1Q86U42 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
UBR4-212ENST00000475973 DNAJC5BQ9UF47 199 aa12.48□□□□□ -0.41
UBR4-212ENST00000475973 PPP4R3CPQ6ZMV5 832 aa12.46□□□□□ -0.41
UBR4-212ENST00000475973 BICRAQ9NZM4 1560 aa12.43□□□□□ -0.42
UBR4-212ENST00000475973 SHROOM4Q9ULL8 1493 aa12.42□□□□□ -0.42
UBR4-212ENST00000475973 UNC13AQ9UPW8 1703 aa12.42□□□□□ -0.42
UBR4-212ENST00000475973 SCRIBQ14160 1630 aa12.35□□□□□ -0.43
UBR4-212ENST00000475973 EHMT2Q96KQ7 1210 aa12.29□□□□□ -0.44
UBR4-212ENST00000475973 NCBP3Q53F19 620 aaKnown RBP12.26□□□□□ -0.45
UBR4-212ENST00000475973 EIF4G1Q04637 1599 aaKnown RBP12.18□□□□□ -0.46
UBR4-212ENST00000475973 CC2D2AQ9P2K1 1620 aa12.15□□□□□ -0.46
UBR4-212ENST00000475973 CECR2Q9BXF3 1484 aa12.15□□□□□ -0.46
UBR4-212ENST00000475973 SLC4A1APQ9BWU0 796 aaKnown RBP12.15□□□□□ -0.46
UBR4-212ENST00000475973 NPM3O75607 178 aaKnown RBP12.09□□□□□ -0.47
UBR4-212ENST00000475973 MSH5O43196 834 aa12.08□□□□□ -0.48
UBR4-212ENST00000475973 SCAF1Q9H7N4 1312 aaKnown RBP12.05□□□□□ -0.48
UBR4-212ENST00000475973 CNKSR2Q8WXI2 1034 aa12.02□□□□□ -0.49
UBR4-212ENST00000475973 CSRNP3Q8WYN3 585 aa12□□□□□ -0.49
UBR4-212ENST00000475973 NCAPD3P42695 1498 aa11.83□□□□□ -0.52
UBR4-212ENST00000475973 MAPK8IP2Q13387 824 aaPredicted RBP11.83□□□□□ -0.52
UBR4-212ENST00000475973 SMARCA2P51531 1590 aa11.8□□□□□ -0.52
UBR4-212ENST00000475973 ATAD2BQ9ULI0 1458 aa11.8□□□□□ -0.52
UBR4-212ENST00000475973 BAZ1AQ9NRL2 1556 aaPredicted RBP11.79□□□□□ -0.52
UBR4-212ENST00000475973 SMARCA4P51532 1647 aa11.78□□□□□ -0.52
UBR4-212ENST00000475973 HMGXB3Q12766 1538 aa11.77□□□□□ -0.52
UBR4-212ENST00000475973 BAZ1BQ9UIG0 1483 aaKnown RBP11.72□□□□□ -0.53
UBR4-212ENST00000475973 ERCC6Q03468 1493 aa11.7□□□□□ -0.54
UBR4-212ENST00000475973 ZBTB22O15209 634 aa11.69□□□□□ -0.54
UBR4-212ENST00000475973 PEG3Q9GZU2 1588 aa11.68□□□□□ -0.54
UBR4-212ENST00000475973 RNF216Q9NWF9 866 aaPredicted RBP11.68□□□□□ -0.54
UBR4-212ENST00000475973 CUX2O14529 1486 aa11.64□□□□□ -0.55
UBR4-212ENST00000475973 MROH2BQ7Z745 1585 aa11.64□□□□□ -0.55
UBR4-212ENST00000475973 SUPT5HO00267 1087 aaKnown RBP11.57□□□□□ -0.56
UBR4-212ENST00000475973 DMRT2Q9Y5R5 561 aa11.57□□□□□ -0.56
UBR4-212ENST00000475973 NESP48681 1621 aa11.57□□□□□ -0.56
UBR4-212ENST00000475973 LAMC3Q9Y6N6 1575 aa11.55□□□□□ -0.56
UBR4-212ENST00000475973 FOXD4L1Q9NU39 408 aa11.54□□□□□ -0.56
UBR4-212ENST00000475973 PDS5BQ9NTI5 1447 aa11.52□□□□□ -0.56
UBR4-212ENST00000475973 HOXD11P31277 338 aaPredicted RBP11.52□□□□□ -0.57
UBR4-212ENST00000475973 CADPSQ9ULU8 1353 aa11.49□□□□□ -0.57
UBR4-212ENST00000475973 WIZO95785 1651 aa11.47□□□□□ -0.57
UBR4-212ENST00000475973 DNAJC5Q9H3Z4 198 aa11.47□□□□□ -0.57
UBR4-212ENST00000475973 THOC2Q8NI27 1593 aaKnown RBP11.45□□□□□ -0.58
UBR4-212ENST00000475973 RSF1Q96T23 1441 aaPredicted RBP11.45□□□□□ -0.58
UBR4-212ENST00000475973 TOP2AP11388 1531 aaKnown RBP11.42□□□□□ -0.58
UBR4-212ENST00000475973 MRC2Q9UBG0 1479 aa11.41□□□□□ -0.58
UBR4-212ENST00000475973 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
UBR4-212ENST00000475973 HRCP23327 699 aa11.38□□□□□ -0.59
UBR4-212ENST00000475973 KIF21AQ7Z4S6 1674 aa11.37□□□□□ -0.59
UBR4-212ENST00000475973 CFTRP13569 1480 aa11.37□□□□□ -0.59
UBR4-212ENST00000475973 FANCD2Q9BXW9 1451 aa11.36□□□□□ -0.59
UBR4-212ENST00000475973 WDR62O43379 1518 aa11.35□□□□□ -0.59
UBR4-212ENST00000475973 SLC4A2P04920 1241 aa11.32□□□□□ -0.6
UBR4-212ENST00000475973 CCDC88BA6NC98 1476 aa11.25□□□□□ -0.61
UBR4-212ENST00000475973 URB2Q14146 1524 aaKnown RBP11.22□□□□□ -0.61
UBR4-212ENST00000475973 ABCC8Q09428 1581 aa11.16□□□□□ -0.62
UBR4-212ENST00000475973 IFT140Q96RY7 1462 aa11.15□□□□□ -0.62
UBR4-212ENST00000475973 MYCNP04198 464 aaPredicted RBP11.15□□□□□ -0.62
UBR4-212ENST00000475973 PRDM2Q13029 1718 aa11.15□□□□□ -0.63
UBR4-212ENST00000475973 TOPBP1Q92547 1522 aa11.13□□□□□ -0.63
UBR4-212ENST00000475973 ATXN8OSP0DMR3 200 aa11.12□□□□□ -0.63
UBR4-212ENST00000475973 DNMBPQ6XZF7 1577 aa11.11□□□□□ -0.63
UBR4-212ENST00000475973 OSCARQ8IYS5 282 aa11.09□□□□□ -0.63
UBR4-212ENST00000475973 PCGF6Q9BYE7 350 aa11.08□□□□□ -0.64
UBR4-212ENST00000475973 ZNF608Q9ULD9 1512 aaPredicted RBP11.06□□□□□ -0.64
UBR4-212ENST00000475973 LOC105371045A0A1W2PR82 267 aa11.06□□□□□ -0.64
UBR4-212ENST00000475973 TRIM26Q12899 539 aaPredicted RBP11.05□□□□□ -0.64
UBR4-212ENST00000475973 TRIM41Q8WV44 630 aa11.04□□□□□ -0.64
UBR4-212ENST00000475973 POLA1P09884 1462 aaPredicted RBP11.03□□□□□ -0.64
UBR4-212ENST00000475973 EIF4G3O43432 1585 aaKnown RBP11.03□□□□□ -0.64
UBR4-212ENST00000475973 SOGA1O94964 1423 aa10.99□□□□□ -0.65
UBR4-212ENST00000475973 DCAF8L1A6NGE4 600 aa10.98□□□□□ -0.65
UBR4-212ENST00000475973 AQRO60306 1485 aaKnown RBP eCLIP10.98□□□□□ -0.651e-8■■■■■ 30.3
UBR4-212ENST00000475973 FGD5Q6ZNL6 1462 aa10.98□□□□□ -0.65
UBR4-212ENST00000475973 TARBP1Q13395 1621 aaKnown RBP10.98□□□□□ -0.65
UBR4-212ENST00000475973 WDR97A6NE52 1622 aa10.96□□□□□ -0.65
UBR4-212ENST00000475973 RAD54L2Q9Y4B4 1467 aa10.96□□□□□ -0.65
UBR4-212ENST00000475973 CUX1P39880 1505 aa10.95□□□□□ -0.66
UBR4-212ENST00000475973 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.94□□□□□ -0.66
UBR4-212ENST00000475973 TDRD9Q8NDG6 1382 aaKnown RBP10.93□□□□□ -0.66
UBR4-212ENST00000475973 FBLN2P98095 1184 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms