RNA–Protein interactions for RNA: ENST00000475464.1

PTP4A2-204, Transcript of protein tyrosine phosphatase type IVA, member 2, humanhuman

TSL 3

Gene PTP4A2, Length 366 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A2-204ENST00000475464 NISCHQ9Y2I1 1504 aa25.56■■□□□ 1.68
PTP4A2-204ENST00000475464 ABCC9O60706 1549 aa23.26■■□□□ 1.31
PTP4A2-204ENST00000475464 CCDC180Q9P1Z9 1646 aa22.89■■□□□ 1.25
PTP4A2-204ENST00000475464 DNAJC5BQ9UF47 199 aa22.03■■□□□ 1.12
PTP4A2-204ENST00000475464 RB1CC1Q8TDY2 1594 aa21.98■■□□□ 1.11
PTP4A2-204ENST00000475464 DCAF8L2P0C7V8 631 aa21.9■■□□□ 1.1
PTP4A2-204ENST00000475464 NACADO15069 1562 aa21.78■■□□□ 1.08
PTP4A2-204ENST00000475464 PABPN1Q86U42 306 aaKnown RBP eCLIP21.72■■□□□ 1.07
PTP4A2-204ENST00000475464 MYO15BQ96JP2 1530 aa21.39■■□□□ 1.01
PTP4A2-204ENST00000475464 UNC13AQ9UPW8 1703 aa21.33■■□□□ 1.01
PTP4A2-204ENST00000475464 BICRAQ9NZM4 1560 aa21.3■■□□□ 1
PTP4A2-204ENST00000475464 ZCCHC6Q5VYS8 1495 aaKnown RBP21.11■□□□□ 0.97
PTP4A2-204ENST00000475464 DCAF1Q9Y4B6 1507 aa21.04■□□□□ 0.96
PTP4A2-204ENST00000475464 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
PTP4A2-204ENST00000475464 CECR2Q9BXF3 1484 aa20.97■□□□□ 0.95
PTP4A2-204ENST00000475464 SCRIBQ14160 1630 aa20.95■□□□□ 0.94
PTP4A2-204ENST00000475464 CC2D2AQ9P2K1 1620 aa20.92■□□□□ 0.94
PTP4A2-204ENST00000475464 EIF4G1Q04637 1599 aaKnown RBP20.83■□□□□ 0.92
PTP4A2-204ENST00000475464 DNAJC5Q9H3Z4 198 aa20.38■□□□□ 0.85
PTP4A2-204ENST00000475464 NCAPD3P42695 1498 aa20.15■□□□□ 0.82
PTP4A2-204ENST00000475464 ERCC6Q03468 1493 aa20.12■□□□□ 0.81
PTP4A2-204ENST00000475464 CUX2O14529 1486 aa20.07■□□□□ 0.8
PTP4A2-204ENST00000475464 ATAD2BQ9ULI0 1458 aa20.06■□□□□ 0.8
PTP4A2-204ENST00000475464 SMARCA2P51531 1590 aa19.97■□□□□ 0.79
PTP4A2-204ENST00000475464 SMARCA4P51532 1647 aa19.92■□□□□ 0.78
PTP4A2-204ENST00000475464 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
PTP4A2-204ENST00000475464 NESP48681 1621 aa19.9■□□□□ 0.78
PTP4A2-204ENST00000475464 BAZ1BQ9UIG0 1483 aaKnown RBP19.87■□□□□ 0.77
PTP4A2-204ENST00000475464 BAZ1AQ9NRL2 1556 aaPredicted RBP19.83■□□□□ 0.77
PTP4A2-204ENST00000475464 PEG3Q9GZU2 1588 aa19.71■□□□□ 0.75
PTP4A2-204ENST00000475464 MROH2BQ7Z745 1585 aa19.7■□□□□ 0.74
PTP4A2-204ENST00000475464 LAMC3Q9Y6N6 1575 aa19.67■□□□□ 0.74
PTP4A2-204ENST00000475464 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
PTP4A2-204ENST00000475464 THOC2Q8NI27 1593 aaKnown RBP19.62■□□□□ 0.73
PTP4A2-204ENST00000475464 CADPSQ9ULU8 1353 aa19.57■□□□□ 0.72
PTP4A2-204ENST00000475464 KIF21AQ7Z4S6 1674 aa19.52■□□□□ 0.72
PTP4A2-204ENST00000475464 TRIM41Q8WV44 630 aa19.48■□□□□ 0.71
PTP4A2-204ENST00000475464 MRC2Q9UBG0 1479 aa19.46■□□□□ 0.71
PTP4A2-204ENST00000475464 WIZO95785 1651 aa19.4■□□□□ 0.7
PTP4A2-204ENST00000475464 WDR62O43379 1518 aa19.36■□□□□ 0.69
PTP4A2-204ENST00000475464 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
PTP4A2-204ENST00000475464 FANCD2Q9BXW9 1451 aa19.33■□□□□ 0.68
PTP4A2-204ENST00000475464 CFTRP13569 1480 aa19.27■□□□□ 0.67
PTP4A2-204ENST00000475464 RSF1Q96T23 1441 aaPredicted RBP19.26■□□□□ 0.67
PTP4A2-204ENST00000475464 OSCARQ8IYS5 282 aa19.26■□□□□ 0.67
PTP4A2-204ENST00000475464 TOP2AP11388 1531 aaKnown RBP19.16■□□□□ 0.66
PTP4A2-204ENST00000475464 URB2Q14146 1524 aaKnown RBP19.15■□□□□ 0.66
PTP4A2-204ENST00000475464 CCDC88BA6NC98 1476 aa19.01■□□□□ 0.63
PTP4A2-204ENST00000475464 IFT140Q96RY7 1462 aa18.98■□□□□ 0.63
PTP4A2-204ENST00000475464 ZNF608Q9ULD9 1512 aaPredicted RBP18.96■□□□□ 0.63
PTP4A2-204ENST00000475464 TOPBP1Q92547 1522 aa18.91■□□□□ 0.62
PTP4A2-204ENST00000475464 ABCC8Q09428 1581 aa18.88■□□□□ 0.61
PTP4A2-204ENST00000475464 PRDM2Q13029 1718 aa18.86■□□□□ 0.61
PTP4A2-204ENST00000475464 RIMBP3CA6NJZ7 1639 aa18.86■□□□□ 0.61
PTP4A2-204ENST00000475464 RIMBP3BA6NNM3 1639 aa18.86■□□□□ 0.61
PTP4A2-204ENST00000475464 RIMBP3Q9UFD9 1639 aa18.86■□□□□ 0.61
PTP4A2-204ENST00000475464 FBLN2P98095 1184 aa18.85■□□□□ 0.61
PTP4A2-204ENST00000475464 CYB5RLQ6IPT4 315 aa18.85■□□□□ 0.61
PTP4A2-204ENST00000475464 ARHGEF11O15085 1522 aa18.82■□□□□ 0.6
PTP4A2-204ENST00000475464 AQRO60306 1485 aaKnown RBP eCLIP18.82■□□□□ 0.6
PTP4A2-204ENST00000475464 DNMBPQ6XZF7 1577 aa18.79■□□□□ 0.6
PTP4A2-204ENST00000475464 EIF4G3O43432 1585 aaKnown RBP18.77■□□□□ 0.6
PTP4A2-204ENST00000475464 TRHP20396 242 aaPredicted RBP18.74■□□□□ 0.59
PTP4A2-204ENST00000475464 POLA1P09884 1462 aaPredicted RBP18.71■□□□□ 0.59
PTP4A2-204ENST00000475464 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
PTP4A2-204ENST00000475464 TARBP1Q13395 1621 aaKnown RBP18.7■□□□□ 0.58
PTP4A2-204ENST00000475464 SOGA1O94964 1423 aa18.69■□□□□ 0.58
PTP4A2-204ENST00000475464 RAD54L2Q9Y4B4 1467 aa18.69■□□□□ 0.58
PTP4A2-204ENST00000475464 CHMP7Q8WUX9 453 aaPredicted RBP18.65■□□□□ 0.58
PTP4A2-204ENST00000475464 ARAP1Q96P48 1450 aa18.63■□□□□ 0.57
PTP4A2-204ENST00000475464 CHD1O14646 1710 aa18.63■□□□□ 0.57
PTP4A2-204ENST00000475464 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.56
PTP4A2-204ENST00000475464 FGD5Q6ZNL6 1462 aa18.58■□□□□ 0.56
PTP4A2-204ENST00000475464 GRIN2BQ13224 1484 aa18.52■□□□□ 0.55
PTP4A2-204ENST00000475464 CUX1P39880 1505 aa18.51■□□□□ 0.55
PTP4A2-204ENST00000475464 MAGI1Q96QZ7 1491 aaPredicted RBP18.5■□□□□ 0.55
PTP4A2-204ENST00000475464 WDR97A6NE52 1622 aa18.48■□□□□ 0.55
PTP4A2-204ENST00000475464 SYNJ1O43426 1573 aa18.47■□□□□ 0.55
PTP4A2-204ENST00000475464 SYNJ2O15056 1496 aa18.46■□□□□ 0.54
PTP4A2-204ENST00000475464 CLASP1Q7Z460 1538 aa18.45■□□□□ 0.54
PTP4A2-204ENST00000475464 GAPVD1Q14C86 1478 aa18.43■□□□□ 0.54
PTP4A2-204ENST00000475464 SUPT5HO00267 1087 aaKnown RBP18.42■□□□□ 0.54
PTP4A2-204ENST00000475464 AEBP2Q6ZN18 517 aaPredicted RBP18.34■□□□□ 0.53
PTP4A2-204ENST00000475464 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.53
PTP4A2-204ENST00000475464 WRNQ14191 1432 aaPredicted RBP eCLIP18.3■□□□□ 0.52
PTP4A2-204ENST00000475464 PBRM1Q86U86 1689 aa18.28■□□□□ 0.52
PTP4A2-204ENST00000475464 ABCA5Q8WWZ7 1642 aa18.26■□□□□ 0.51
PTP4A2-204ENST00000475464 GRIN2AQ12879 1464 aa18.25■□□□□ 0.51
PTP4A2-204ENST00000475464 FHAD1B1AJZ9 1412 aa18.19■□□□□ 0.5
PTP4A2-204ENST00000475464 NUP160Q12769 1436 aa18.19■□□□□ 0.5
PTP4A2-204ENST00000475464 ERCC6L2Q5T890 1561 aa18.18■□□□□ 0.5
PTP4A2-204ENST00000475464 ADAMTS12P58397 1594 aa18.15■□□□□ 0.5
PTP4A2-204ENST00000475464 CEP170Q5SW79 1584 aa18.15■□□□□ 0.5
PTP4A2-204ENST00000475464 TOP2BQ02880 1626 aa18.12■□□□□ 0.49
PTP4A2-204ENST00000475464 JPH4Q96JJ6 628 aa18.12■□□□□ 0.49
PTP4A2-204ENST00000475464 PRG4Q92954 1404 aaPredicted RBP18.1■□□□□ 0.49
PTP4A2-204ENST00000475464 ERICH3Q5RHP9 1530 aa18.09■□□□□ 0.49
PTP4A2-204ENST00000475464 BIVM-ERCC5R4GMW8 1640 aa18.08■□□□□ 0.48
PTP4A2-204ENST00000475464 NPM1P06748 294 aaKnown RBP eCLIP18.06■□□□□ 0.48
PTP4A2-204ENST00000475464 SHROOM2Q13796 1616 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms