RNA–Protein interactions for RNA: ENST00000474896.1

SRRT-209, Transcript of serrate, RNA effector molecule, humanhuman

TSL 3

Gene SRRT, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRT-209ENST00000474896 NISCHQ9Y2I1 1504 aa39.22■■■■□ 3.87
SRRT-209ENST00000474896 ABCC9O60706 1549 aa35.44■■■■□ 3.26
SRRT-209ENST00000474896 CCDC180Q9P1Z9 1646 aa35.17■■■■□ 3.22
SRRT-209ENST00000474896 RB1CC1Q8TDY2 1594 aa33.61■■■□□ 2.97
SRRT-209ENST00000474896 DNAJC5BQ9UF47 199 aa33.46■■■□□ 2.95
SRRT-209ENST00000474896 DCAF8L2P0C7V8 631 aa33.36■■■□□ 2.93
SRRT-209ENST00000474896 NACADO15069 1562 aa33.34■■■□□ 2.93
SRRT-209ENST00000474896 PABPN1Q86U42 306 aaKnown RBP eCLIP33.06■■■□□ 2.88
SRRT-209ENST00000474896 UNC13AQ9UPW8 1703 aa32.82■■■□□ 2.85
SRRT-209ENST00000474896 MYO15BQ96JP2 1530 aa32.81■■■□□ 2.84
SRRT-209ENST00000474896 BICRAQ9NZM4 1560 aa32.63■■■□□ 2.81
SRRT-209ENST00000474896 ZCCHC6Q5VYS8 1495 aaKnown RBP32.43■■■□□ 2.78
SRRT-209ENST00000474896 DCAF1Q9Y4B6 1507 aa32.34■■■□□ 2.77
SRRT-209ENST00000474896 SHROOM4Q9ULL8 1493 aa32.11■■■□□ 2.73
SRRT-209ENST00000474896 SCRIBQ14160 1630 aa32.11■■■□□ 2.73
SRRT-209ENST00000474896 CC2D2AQ9P2K1 1620 aa31.97■■■□□ 2.71
SRRT-209ENST00000474896 CECR2Q9BXF3 1484 aa31.93■■■□□ 2.7
SRRT-209ENST00000474896 EIF4G1Q04637 1599 aaKnown RBP31.85■■■□□ 2.69
SRRT-209ENST00000474896 DNAJC5Q9H3Z4 198 aa30.82■■■□□ 2.52
SRRT-209ENST00000474896 NCAPD3P42695 1498 aa30.82■■■□□ 2.52
SRRT-209ENST00000474896 ATAD2BQ9ULI0 1458 aa30.7■■■□□ 2.51
SRRT-209ENST00000474896 ERCC6Q03468 1493 aa30.6■■■□□ 2.49
SRRT-209ENST00000474896 SMARCA4P51532 1647 aa30.59■■■□□ 2.49
SRRT-209ENST00000474896 SMARCA2P51531 1590 aa30.58■■■□□ 2.49
SRRT-209ENST00000474896 CUX2O14529 1486 aa30.55■■■□□ 2.48
SRRT-209ENST00000474896 HMGXB3Q12766 1538 aa30.51■■■□□ 2.47
SRRT-209ENST00000474896 BAZ1AQ9NRL2 1556 aaPredicted RBP30.43■■■□□ 2.46
SRRT-209ENST00000474896 NESP48681 1621 aa30.4■■■□□ 2.46
SRRT-209ENST00000474896 BAZ1BQ9UIG0 1483 aaKnown RBP30.39■■■□□ 2.46
SRRT-209ENST00000474896 PEG3Q9GZU2 1588 aa30.28■■■□□ 2.44
SRRT-209ENST00000474896 MROH2BQ7Z745 1585 aa30.24■■■□□ 2.43
SRRT-209ENST00000474896 LAMC3Q9Y6N6 1575 aa30.11■■■□□ 2.41
SRRT-209ENST00000474896 THOC2Q8NI27 1593 aaKnown RBP30.03■■■□□ 2.4
SRRT-209ENST00000474896 PDS5BQ9NTI5 1447 aa29.99■■■□□ 2.39
SRRT-209ENST00000474896 KIF21AQ7Z4S6 1674 aa29.95■■■□□ 2.38
SRRT-209ENST00000474896 CADPSQ9ULU8 1353 aa29.9■■■□□ 2.38
SRRT-209ENST00000474896 WIZO95785 1651 aa29.86■■■□□ 2.37
SRRT-209ENST00000474896 MRC2Q9UBG0 1479 aa29.71■■■□□ 2.35
SRRT-209ENST00000474896 WDR62O43379 1518 aa29.61■■■□□ 2.33
SRRT-209ENST00000474896 RSF1Q96T23 1441 aaPredicted RBP29.57■■■□□ 2.32
SRRT-209ENST00000474896 CEP164Q9UPV0 1460 aa29.56■■■□□ 2.32
SRRT-209ENST00000474896 FANCD2Q9BXW9 1451 aa29.54■■■□□ 2.32
SRRT-209ENST00000474896 CFTRP13569 1480 aa29.5■■■□□ 2.31
SRRT-209ENST00000474896 TRIM41Q8WV44 630 aa29.44■■■□□ 2.3
SRRT-209ENST00000474896 TOP2AP11388 1531 aaKnown RBP29.44■■■□□ 2.3
SRRT-209ENST00000474896 URB2Q14146 1524 aaKnown RBP29.3■■■□□ 2.28
SRRT-209ENST00000474896 OSCARQ8IYS5 282 aa29.26■■■□□ 2.27
SRRT-209ENST00000474896 CCDC88BA6NC98 1476 aa29.17■■■□□ 2.26
SRRT-209ENST00000474896 PRDM2Q13029 1718 aa29.1■■■□□ 2.25
SRRT-209ENST00000474896 IFT140Q96RY7 1462 aa28.99■■■□□ 2.23
SRRT-209ENST00000474896 ZNF608Q9ULD9 1512 aaPredicted RBP28.99■■■□□ 2.23
SRRT-209ENST00000474896 TOPBP1Q92547 1522 aa28.95■■■□□ 2.23
SRRT-209ENST00000474896 ABCC8Q09428 1581 aa28.88■■■□□ 2.21
SRRT-209ENST00000474896 DNMBPQ6XZF7 1577 aa28.8■■■□□ 2.2
SRRT-209ENST00000474896 RIMBP3CA6NJZ7 1639 aa28.78■■■□□ 2.2
SRRT-209ENST00000474896 RIMBP3BA6NNM3 1639 aa28.78■■■□□ 2.2
SRRT-209ENST00000474896 RIMBP3Q9UFD9 1639 aa28.78■■■□□ 2.2
SRRT-209ENST00000474896 EIF4G3O43432 1585 aaKnown RBP28.75■■■□□ 2.19
SRRT-209ENST00000474896 AQRO60306 1485 aaKnown RBP eCLIP28.73■■■□□ 2.192e-9■□□□□ 10.5
SRRT-209ENST00000474896 TARBP1Q13395 1621 aaKnown RBP28.68■■■□□ 2.18
SRRT-209ENST00000474896 ARHGEF11O15085 1522 aa28.68■■■□□ 2.18
SRRT-209ENST00000474896 POLA1P09884 1462 aaPredicted RBP28.65■■■□□ 2.18
SRRT-209ENST00000474896 FBLN2P98095 1184 aa28.64■■■□□ 2.18
SRRT-209ENST00000474896 CYB5RLQ6IPT4 315 aa28.61■■■□□ 2.17
SRRT-209ENST00000474896 RAD54L2Q9Y4B4 1467 aa28.59■■■□□ 2.17
SRRT-209ENST00000474896 SOGA1O94964 1423 aa28.58■■■□□ 2.17
SRRT-209ENST00000474896 CHD1O14646 1710 aa28.57■■■□□ 2.16
SRRT-209ENST00000474896 TDRD9Q8NDG6 1382 aaKnown RBP28.55■■■□□ 2.16
SRRT-209ENST00000474896 FGD5Q6ZNL6 1462 aa28.46■■■□□ 2.15
SRRT-209ENST00000474896 CUX1P39880 1505 aa28.4■■■□□ 2.14
SRRT-209ENST00000474896 CHMP7Q8WUX9 453 aaPredicted RBP28.39■■■□□ 2.14
SRRT-209ENST00000474896 ARAP1Q96P48 1450 aa28.39■■■□□ 2.13
SRRT-209ENST00000474896 SNAPC4Q5SXM2 1469 aa28.38■■■□□ 2.13
SRRT-209ENST00000474896 TRHP20396 242 aaPredicted RBP28.34■■■□□ 2.13
SRRT-209ENST00000474896 WDR97A6NE52 1622 aa28.33■■■□□ 2.13
SRRT-209ENST00000474896 GRIN2BQ13224 1484 aa28.29■■■□□ 2.12
SRRT-209ENST00000474896 MAGI1Q96QZ7 1491 aaPredicted RBP28.28■■■□□ 2.12
SRRT-209ENST00000474896 SUPT5HO00267 1087 aaKnown RBP28.28■■■□□ 2.12
SRRT-209ENST00000474896 CLASP1Q7Z460 1538 aa28.23■■■□□ 2.11
SRRT-209ENST00000474896 SYNJ1O43426 1573 aa28.22■■■□□ 2.11
SRRT-209ENST00000474896 SYNJ2O15056 1496 aa28.21■■■□□ 2.11
SRRT-209ENST00000474896 GAPVD1Q14C86 1478 aa28.19■■■□□ 2.1
SRRT-209ENST00000474896 PBRM1Q86U86 1689 aa28.11■■■□□ 2.09
SRRT-209ENST00000474896 ABCA10Q8WWZ4 1543 aa28.11■■■□□ 2.09
SRRT-209ENST00000474896 ABCA5Q8WWZ7 1642 aa28.04■■■□□ 2.08
SRRT-209ENST00000474896 WRNQ14191 1432 aaPredicted RBP eCLIP28.01■■■□□ 2.07
SRRT-209ENST00000474896 GRIN2AQ12879 1464 aa27.91■■■□□ 2.06
SRRT-209ENST00000474896 TOP2BQ02880 1626 aa27.89■■■□□ 2.05
SRRT-209ENST00000474896 BIVM-ERCC5R4GMW8 1640 aa27.86■■■□□ 2.05
SRRT-209ENST00000474896 ADAMTS12P58397 1594 aa27.83■■■□□ 2.05
SRRT-209ENST00000474896 ERCC6L2Q5T890 1561 aa27.83■■■□□ 2.05
SRRT-209ENST00000474896 FHAD1B1AJZ9 1412 aa27.83■■■□□ 2.05
SRRT-209ENST00000474896 NUP160Q12769 1436 aa27.83■■■□□ 2.05
SRRT-209ENST00000474896 CEP170Q5SW79 1584 aa27.81■■■□□ 2.04
SRRT-209ENST00000474896 ERICH3Q5RHP9 1530 aa27.75■■■□□ 2.03
SRRT-209ENST00000474896 SHROOM2Q13796 1616 aa27.68■■■□□ 2.02
SRRT-209ENST00000474896 JPH4Q96JJ6 628 aa27.66■■■□□ 2.02
SRRT-209ENST00000474896 PRG4Q92954 1404 aaPredicted RBP27.63■■■□□ 2.01
SRRT-209ENST00000474896 AEBP2Q6ZN18 517 aaPredicted RBP27.62■■■□□ 2.01
SRRT-209ENST00000474896 IGF1RP08069 1367 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms