RNA–Protein interactions for RNA: ENST00000474067.5

SNX13-206, Transcript of sorting nexin 13, humanhuman

TSL 3

Gene SNX13, Length 603 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-206ENST00000474067 NISCHQ9Y2I1 1504 aa50.11■■■■■ 5.61
SNX13-206ENST00000474067 CCDC180Q9P1Z9 1646 aa44.85■■■■■ 4.77
SNX13-206ENST00000474067 ABCC9O60706 1549 aa44.07■■■■■ 4.65
SNX13-206ENST00000474067 RB1CC1Q8TDY2 1594 aa42.41■■■■■ 4.38
SNX13-206ENST00000474067 NACADO15069 1562 aa42.27■■■■■ 4.36
SNX13-206ENST00000474067 DCAF8L2P0C7V8 631 aa42.03■■■■■ 4.32
SNX13-206ENST00000474067 MYO15BQ96JP2 1530 aa41.93■■■■■ 4.3
SNX13-206ENST00000474067 ZCCHC6Q5VYS8 1495 aaKnown RBP41.66■■■■■ 4.26
SNX13-206ENST00000474067 DCAF1Q9Y4B6 1507 aa41.56■■■■■ 4.24
SNX13-206ENST00000474067 UNC13AQ9UPW8 1703 aa41.24■■■■■ 4.19
SNX13-206ENST00000474067 PABPN1Q86U42 306 aaKnown RBP eCLIP41.06■■■■■ 4.16
SNX13-206ENST00000474067 BICRAQ9NZM4 1560 aa40.91■■■■■ 4.14
SNX13-206ENST00000474067 SHROOM4Q9ULL8 1493 aa40.8■■■■■ 4.12
SNX13-206ENST00000474067 SCRIBQ14160 1630 aa40.73■■■■■ 4.11
SNX13-206ENST00000474067 DNAJC5BQ9UF47 199 aa40.61■■■■■ 4.09
SNX13-206ENST00000474067 EIF4G1Q04637 1599 aaKnown RBP39.98■■■■□ 3.99
SNX13-206ENST00000474067 CC2D2AQ9P2K1 1620 aa39.88■■■■□ 3.97
SNX13-206ENST00000474067 CECR2Q9BXF3 1484 aa39.72■■■■□ 3.95
SNX13-206ENST00000474067 SMARCA4P51532 1647 aa38.97■■■■□ 3.83
SNX13-206ENST00000474067 BAZ1AQ9NRL2 1556 aaPredicted RBP38.97■■■■□ 3.83
SNX13-206ENST00000474067 NCAPD3P42695 1498 aa38.94■■■■□ 3.82
SNX13-206ENST00000474067 SMARCA2P51531 1590 aa38.91■■■■□ 3.82
SNX13-206ENST00000474067 ATAD2BQ9ULI0 1458 aa38.85■■■■□ 3.81
SNX13-206ENST00000474067 HMGXB3Q12766 1538 aa38.75■■■■□ 3.79
SNX13-206ENST00000474067 PEG3Q9GZU2 1588 aa38.65■■■■□ 3.78
SNX13-206ENST00000474067 BAZ1BQ9UIG0 1483 aaKnown RBP38.59■■■■□ 3.77
SNX13-206ENST00000474067 MROH2BQ7Z745 1585 aa38.53■■■■□ 3.76
SNX13-206ENST00000474067 ERCC6Q03468 1493 aa38.18■■■■□ 3.7
SNX13-206ENST00000474067 WIZO95785 1651 aa38.09■■■■□ 3.69
SNX13-206ENST00000474067 LAMC3Q9Y6N6 1575 aa38.04■■■■□ 3.68
SNX13-206ENST00000474067 RSF1Q96T23 1441 aaPredicted RBP37.98■■■■□ 3.67
SNX13-206ENST00000474067 NESP48681 1621 aa37.94■■■■□ 3.66
SNX13-206ENST00000474067 CUX2O14529 1486 aa37.94■■■■□ 3.66
SNX13-206ENST00000474067 PDS5BQ9NTI5 1447 aa37.83■■■■□ 3.65
SNX13-206ENST00000474067 CADPSQ9ULU8 1353 aa37.79■■■■□ 3.64
SNX13-206ENST00000474067 TOP2AP11388 1531 aaKnown RBP37.78■■■■□ 3.64
SNX13-206ENST00000474067 KIF21AQ7Z4S6 1674 aa37.56■■■■□ 3.6
SNX13-206ENST00000474067 THOC2Q8NI27 1593 aaKnown RBP37.55■■■■□ 3.6
SNX13-206ENST00000474067 CFTRP13569 1480 aa37.46■■■■□ 3.59
SNX13-206ENST00000474067 MRC2Q9UBG0 1479 aa37.39■■■■□ 3.58
SNX13-206ENST00000474067 CEP164Q9UPV0 1460 aa37.39■■■■□ 3.58
SNX13-206ENST00000474067 FANCD2Q9BXW9 1451 aa37.33■■■■□ 3.57
SNX13-206ENST00000474067 CCDC88BA6NC98 1476 aa37.26■■■■□ 3.55
SNX13-206ENST00000474067 WDR62O43379 1518 aa37.25■■■■□ 3.55
SNX13-206ENST00000474067 PRDM2Q13029 1718 aa37.2■■■■□ 3.55
SNX13-206ENST00000474067 DNAJC5Q9H3Z4 198 aa37.12■■■■□ 3.53
SNX13-206ENST00000474067 URB2Q14146 1524 aaKnown RBP36.9■■■■□ 3.5
SNX13-206ENST00000474067 ABCC8Q09428 1581 aa36.85■■■■□ 3.49
SNX13-206ENST00000474067 SUPT5HO00267 1087 aaKnown RBP36.72■■■■□ 3.47
SNX13-206ENST00000474067 TOPBP1Q92547 1522 aa36.66■■■■□ 3.46
SNX13-206ENST00000474067 DNMBPQ6XZF7 1577 aa36.65■■■■□ 3.46
SNX13-206ENST00000474067 IFT140Q96RY7 1462 aa36.62■■■■□ 3.45
SNX13-206ENST00000474067 POLA1P09884 1462 aaPredicted RBP36.32■■■■□ 3.41
SNX13-206ENST00000474067 ZNF608Q9ULD9 1512 aaPredicted RBP36.3■■■■□ 3.4
SNX13-206ENST00000474067 OSCARQ8IYS5 282 aa36.29■■■■□ 3.4
SNX13-206ENST00000474067 TARBP1Q13395 1621 aaKnown RBP36.26■■■■□ 3.39
SNX13-206ENST00000474067 EIF4G3O43432 1585 aaKnown RBP36.24■■■■□ 3.39
SNX13-206ENST00000474067 SOGA1O94964 1423 aa36.22■■■■□ 3.39
SNX13-206ENST00000474067 WDR97A6NE52 1622 aa36.19■■■■□ 3.38
SNX13-206ENST00000474067 FGD5Q6ZNL6 1462 aa36.18■■■■□ 3.38
SNX13-206ENST00000474067 CUX1P39880 1505 aa36.18■■■■□ 3.38
SNX13-206ENST00000474067 RAD54L2Q9Y4B4 1467 aa36.09■■■■□ 3.37
SNX13-206ENST00000474067 AQRO60306 1485 aaKnown RBP eCLIP36.08■■■■□ 3.37
SNX13-206ENST00000474067 TDRD9Q8NDG6 1382 aaKnown RBP35.98■■■■□ 3.35
SNX13-206ENST00000474067 WRNQ14191 1432 aaPredicted RBP eCLIP35.92■■■■□ 3.34
SNX13-206ENST00000474067 GRIN2BQ13224 1484 aa35.88■■■■□ 3.33
SNX13-206ENST00000474067 TOP2BQ02880 1626 aa35.86■■■■□ 3.33
SNX13-206ENST00000474067 MAGI1Q96QZ7 1491 aaPredicted RBP35.86■■■■□ 3.33
SNX13-206ENST00000474067 ABCA10Q8WWZ4 1543 aa35.86■■■■□ 3.33
SNX13-206ENST00000474067 BIVM-ERCC5R4GMW8 1640 aa35.86■■■■□ 3.33
SNX13-206ENST00000474067 CHD1O14646 1710 aa35.83■■■■□ 3.33
SNX13-206ENST00000474067 FBLN2P98095 1184 aa35.83■■■■□ 3.33
SNX13-206ENST00000474067 GAPVD1Q14C86 1478 aa35.8■■■■□ 3.32
SNX13-206ENST00000474067 SNAPC4Q5SXM2 1469 aa35.8■■■■□ 3.32
SNX13-206ENST00000474067 CHMP7Q8WUX9 453 aaPredicted RBP35.74■■■■□ 3.31
SNX13-206ENST00000474067 SYNJ1O43426 1573 aa35.72■■■■□ 3.31
SNX13-206ENST00000474067 PBRM1Q86U86 1689 aa35.72■■■■□ 3.31
SNX13-206ENST00000474067 ABCA5Q8WWZ7 1642 aa35.71■■■■□ 3.31
SNX13-206ENST00000474067 TRIM41Q8WV44 630 aa35.7■■■■□ 3.31
SNX13-206ENST00000474067 SYNJ2O15056 1496 aa35.69■■■■□ 3.3
SNX13-206ENST00000474067 RIMBP3CA6NJZ7 1639 aa35.62■■■■□ 3.29
SNX13-206ENST00000474067 RIMBP3BA6NNM3 1639 aa35.62■■■■□ 3.29
SNX13-206ENST00000474067 RIMBP3Q9UFD9 1639 aa35.62■■■■□ 3.29
SNX13-206ENST00000474067 ARHGEF11O15085 1522 aa35.6■■■■□ 3.29
SNX13-206ENST00000474067 ERICH3Q5RHP9 1530 aa35.48■■■■□ 3.27
SNX13-206ENST00000474067 CLASP1Q7Z460 1538 aa35.45■■■■□ 3.27
SNX13-206ENST00000474067 FHAD1B1AJZ9 1412 aa35.41■■■■□ 3.26
SNX13-206ENST00000474067 ADAMTS12P58397 1594 aa35.41■■■■□ 3.26
SNX13-206ENST00000474067 GRIN2AQ12879 1464 aa35.37■■■■□ 3.25
SNX13-206ENST00000474067 CYB5RLQ6IPT4 315 aa35.29■■■■□ 3.24
SNX13-206ENST00000474067 KIF27Q86VH2 1401 aa35.26■■■■□ 3.24
SNX13-206ENST00000474067 ARAP1Q96P48 1450 aa35.23■■■■□ 3.23
SNX13-206ENST00000474067 NUP160Q12769 1436 aa35.22■■■■□ 3.23
SNX13-206ENST00000474067 CEP170Q5SW79 1584 aa35.13■■■■□ 3.21
SNX13-206ENST00000474067 CUL7Q14999 1698 aa35.11■■■■□ 3.21
SNX13-206ENST00000474067 IGF1RP08069 1367 aa35.03■■■■□ 3.2
SNX13-206ENST00000474067 SHROOM2Q13796 1616 aa34.99■■■■□ 3.19
SNX13-206ENST00000474067 RUSC2Q8N2Y8 1516 aa34.89■■■■□ 3.18
SNX13-206ENST00000474067 CARMIL1Q5VZK9 1371 aa34.88■■■■□ 3.17
SNX13-206ENST00000474067 JPH4Q96JJ6 628 aa34.88■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms