RNA–Protein interactions for RNA: ENST00000473949.5

ARF1-206, Transcript of ADP ribosylation factor 1, humanhuman

TSL 5

Gene ARF1, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARF1-206ENST00000473949 NISCHQ9Y2I1 1504 aa51.67■■■■■ 5.86
ARF1-206ENST00000473949 CCDC180Q9P1Z9 1646 aa46.3■■■■■ 5
ARF1-206ENST00000473949 ABCC9O60706 1549 aa46.27■■■■■ 5
ARF1-206ENST00000473949 RB1CC1Q8TDY2 1594 aa44.06■■■■■ 4.64
ARF1-206ENST00000473949 NACADO15069 1562 aa43.76■■■■■ 4.6
ARF1-206ENST00000473949 DCAF8L2P0C7V8 631 aa43.72■■■■■ 4.59
ARF1-206ENST00000473949 DNAJC5BQ9UF47 199 aa43.24■■■■■ 4.51
ARF1-206ENST00000473949 MYO15BQ96JP2 1530 aa43.14■■■■■ 4.5
ARF1-206ENST00000473949 PABPN1Q86U42 306 aaKnown RBP eCLIP43.11■■■■■ 4.49
ARF1-206ENST00000473949 UNC13AQ9UPW8 1703 aa43.02■■■■■ 4.48
ARF1-206ENST00000473949 ZCCHC6Q5VYS8 1495 aaKnown RBP42.84■■■■■ 4.45
ARF1-206ENST00000473949 BICRAQ9NZM4 1560 aa42.72■■■■■ 4.43
ARF1-206ENST00000473949 DCAF1Q9Y4B6 1507 aa42.64■■■■■ 4.42
ARF1-206ENST00000473949 SCRIBQ14160 1630 aa42.27■■■■■ 4.36
ARF1-206ENST00000473949 SHROOM4Q9ULL8 1493 aa42.16■■■■■ 4.34
ARF1-206ENST00000473949 CC2D2AQ9P2K1 1620 aa41.77■■■■■ 4.28
ARF1-206ENST00000473949 EIF4G1Q04637 1599 aaKnown RBP41.7■■■■■ 4.27
ARF1-206ENST00000473949 CECR2Q9BXF3 1484 aa41.66■■■■■ 4.26
ARF1-206ENST00000473949 NCAPD3P42695 1498 aa40.39■■■■■ 4.06
ARF1-206ENST00000473949 ATAD2BQ9ULI0 1458 aa40.3■■■■■ 4.04
ARF1-206ENST00000473949 SMARCA4P51532 1647 aa40.29■■■■■ 4.04
ARF1-206ENST00000473949 SMARCA2P51531 1590 aa40.21■■■■■ 4.03
ARF1-206ENST00000473949 BAZ1AQ9NRL2 1556 aaPredicted RBP40.11■■■■■ 4.01
ARF1-206ENST00000473949 HMGXB3Q12766 1538 aa40.11■■■■■ 4.01
ARF1-206ENST00000473949 ERCC6Q03468 1493 aa39.99■■■■□ 3.99
ARF1-206ENST00000473949 BAZ1BQ9UIG0 1483 aaKnown RBP39.95■■■■□ 3.99
ARF1-206ENST00000473949 PEG3Q9GZU2 1588 aa39.84■■■■□ 3.97
ARF1-206ENST00000473949 MROH2BQ7Z745 1585 aa39.82■■■■□ 3.97
ARF1-206ENST00000473949 CUX2O14529 1486 aa39.8■■■■□ 3.96
ARF1-206ENST00000473949 NESP48681 1621 aa39.76■■■■□ 3.95
ARF1-206ENST00000473949 DNAJC5Q9H3Z4 198 aa39.64■■■■□ 3.94
ARF1-206ENST00000473949 LAMC3Q9Y6N6 1575 aa39.48■■■■□ 3.91
ARF1-206ENST00000473949 WIZO95785 1651 aa39.37■■■■□ 3.89
ARF1-206ENST00000473949 THOC2Q8NI27 1593 aaKnown RBP39.3■■■■□ 3.88
ARF1-206ENST00000473949 PDS5BQ9NTI5 1447 aa39.28■■■■□ 3.88
ARF1-206ENST00000473949 KIF21AQ7Z4S6 1674 aa39.25■■■■□ 3.87
ARF1-206ENST00000473949 CADPSQ9ULU8 1353 aa39.2■■■■□ 3.87
ARF1-206ENST00000473949 RSF1Q96T23 1441 aaPredicted RBP39.04■■■■□ 3.84
ARF1-206ENST00000473949 MRC2Q9UBG0 1479 aa38.92■■■■□ 3.82
ARF1-206ENST00000473949 TOP2AP11388 1531 aaKnown RBP38.87■■■■□ 3.81
ARF1-206ENST00000473949 CEP164Q9UPV0 1460 aa38.81■■■■□ 3.8
ARF1-206ENST00000473949 WDR62O43379 1518 aa38.79■■■■□ 3.8
ARF1-206ENST00000473949 FANCD2Q9BXW9 1451 aa38.77■■■■□ 3.8
ARF1-206ENST00000473949 CFTRP13569 1480 aa38.75■■■■□ 3.79
ARF1-206ENST00000473949 CCDC88BA6NC98 1476 aa38.43■■■■□ 3.74
ARF1-206ENST00000473949 URB2Q14146 1524 aaKnown RBP38.42■■■■□ 3.74
ARF1-206ENST00000473949 PRDM2Q13029 1718 aa38.38■■■■□ 3.73
ARF1-206ENST00000473949 TRIM41Q8WV44 630 aa38.07■■■■□ 3.68
ARF1-206ENST00000473949 OSCARQ8IYS5 282 aa38.04■■■■□ 3.68
ARF1-206ENST00000473949 TOPBP1Q92547 1522 aa38.03■■■■□ 3.68
ARF1-206ENST00000473949 IFT140Q96RY7 1462 aa38.02■■■■□ 3.68
ARF1-206ENST00000473949 ABCC8Q09428 1581 aa37.96■■■■□ 3.67
ARF1-206ENST00000473949 ZNF608Q9ULD9 1512 aaPredicted RBP37.93■■■■□ 3.66
ARF1-206ENST00000473949 DNMBPQ6XZF7 1577 aa37.9■■■■□ 3.66
ARF1-206ENST00000473949 EIF4G3O43432 1585 aaKnown RBP37.74■■■■□ 3.63
ARF1-206ENST00000473949 TARBP1Q13395 1621 aaKnown RBP37.65■■■■□ 3.62
ARF1-206ENST00000473949 POLA1P09884 1462 aaPredicted RBP37.65■■■■□ 3.62
ARF1-206ENST00000473949 AQRO60306 1485 aaKnown RBP eCLIP37.62■■■■□ 3.615e-7■■■■□ 21.3
ARF1-206ENST00000473949 RAD54L2Q9Y4B4 1467 aa37.53■■■■□ 3.6
ARF1-206ENST00000473949 SUPT5HO00267 1087 aaKnown RBP37.51■■■■□ 3.6
ARF1-206ENST00000473949 SOGA1O94964 1423 aa37.51■■■■□ 3.59
ARF1-206ENST00000473949 RIMBP3CA6NJZ7 1639 aa37.5■■■■□ 3.59
ARF1-206ENST00000473949 RIMBP3BA6NNM3 1639 aa37.5■■■■□ 3.59
ARF1-206ENST00000473949 RIMBP3Q9UFD9 1639 aa37.5■■■■□ 3.59
ARF1-206ENST00000473949 FGD5Q6ZNL6 1462 aa37.45■■■■□ 3.59
ARF1-206ENST00000473949 CHD1O14646 1710 aa37.44■■■■□ 3.58
ARF1-206ENST00000473949 FBLN2P98095 1184 aa37.44■■■■□ 3.58
ARF1-206ENST00000473949 TDRD9Q8NDG6 1382 aaKnown RBP37.42■■■■□ 3.58
ARF1-206ENST00000473949 CUX1P39880 1505 aa37.41■■■■□ 3.58
ARF1-206ENST00000473949 ARHGEF11O15085 1522 aa37.4■■■■□ 3.58
ARF1-206ENST00000473949 WDR97A6NE52 1622 aa37.28■■■■□ 3.56
ARF1-206ENST00000473949 SNAPC4Q5SXM2 1469 aa37.26■■■■□ 3.55
ARF1-206ENST00000473949 CYB5RLQ6IPT4 315 aa37.18■■■■□ 3.54
ARF1-206ENST00000473949 GRIN2BQ13224 1484 aa37.16■■■■□ 3.54
ARF1-206ENST00000473949 CHMP7Q8WUX9 453 aaPredicted RBP37.15■■■■□ 3.54
ARF1-206ENST00000473949 MAGI1Q96QZ7 1491 aaPredicted RBP37.13■■■■□ 3.54
ARF1-206ENST00000473949 GAPVD1Q14C86 1478 aa37.05■■■■□ 3.52
ARF1-206ENST00000473949 ARAP1Q96P48 1450 aa37.03■■■■□ 3.52
ARF1-206ENST00000473949 SYNJ1O43426 1573 aa37.03■■■■□ 3.52
ARF1-206ENST00000473949 PBRM1Q86U86 1689 aa37.02■■■■□ 3.52
ARF1-206ENST00000473949 SYNJ2O15056 1496 aa37.02■■■■□ 3.52
ARF1-206ENST00000473949 ABCA10Q8WWZ4 1543 aa37■■■■□ 3.51
ARF1-206ENST00000473949 CLASP1Q7Z460 1538 aa36.98■■■■□ 3.51
ARF1-206ENST00000473949 ABCA5Q8WWZ7 1642 aa36.93■■■■□ 3.5
ARF1-206ENST00000473949 WRNQ14191 1432 aaPredicted RBP eCLIP36.91■■■■□ 3.56e-7■■■■■ 33.4
ARF1-206ENST00000473949 TOP2BQ02880 1626 aa36.84■■■■□ 3.49
ARF1-206ENST00000473949 BIVM-ERCC5R4GMW8 1640 aa36.84■■■■□ 3.49
ARF1-206ENST00000473949 TRHP20396 242 aaPredicted RBP36.77■■■■□ 3.48
ARF1-206ENST00000473949 GRIN2AQ12879 1464 aa36.68■■■■□ 3.46
ARF1-206ENST00000473949 ADAMTS12P58397 1594 aa36.66■■■■□ 3.46
ARF1-206ENST00000473949 FHAD1B1AJZ9 1412 aa36.58■■■■□ 3.45
ARF1-206ENST00000473949 ERICH3Q5RHP9 1530 aa36.54■■■■□ 3.44
ARF1-206ENST00000473949 CEP170Q5SW79 1584 aa36.53■■■■□ 3.44
ARF1-206ENST00000473949 NUP160Q12769 1436 aa36.52■■■■□ 3.44
ARF1-206ENST00000473949 ERCC6L2Q5T890 1561 aa36.43■■■■□ 3.42
ARF1-206ENST00000473949 SHROOM2Q13796 1616 aa36.33■■■■□ 3.41
ARF1-206ENST00000473949 PRG4Q92954 1404 aaPredicted RBP36.21■■■■□ 3.39
ARF1-206ENST00000473949 JPH4Q96JJ6 628 aa36.2■■■■□ 3.39
ARF1-206ENST00000473949 KIF27Q86VH2 1401 aa36.17■■■■□ 3.38
ARF1-206ENST00000473949 RUSC2Q8N2Y8 1516 aa36.13■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms