RNA–Protein interactions for RNA: ENST00000470338.1

TOP3B-215, Transcript of DNA topoisomerase III beta, humanhuman

TSL 5

Gene TOP3B, Length 624 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-215ENST00000470338 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
TOP3B-215ENST00000470338 CCDC180Q9P1Z9 1646 aa30.87■■■□□ 2.53
TOP3B-215ENST00000470338 ABCC9O60706 1549 aa30.26■■■□□ 2.43
TOP3B-215ENST00000470338 RB1CC1Q8TDY2 1594 aa29.09■■■□□ 2.25
TOP3B-215ENST00000470338 NACADO15069 1562 aa29.05■■■□□ 2.24
TOP3B-215ENST00000470338 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
TOP3B-215ENST00000470338 MYO15BQ96JP2 1530 aa28.85■■■□□ 2.21
TOP3B-215ENST00000470338 ZCCHC6Q5VYS8 1495 aaKnown RBP28.82■■■□□ 2.2
TOP3B-215ENST00000470338 DCAF1Q9Y4B6 1507 aa28.69■■■□□ 2.18
TOP3B-215ENST00000470338 UNC13AQ9UPW8 1703 aa28.51■■■□□ 2.15
TOP3B-215ENST00000470338 PABPN1Q86U42 306 aaKnown RBP eCLIP28.26■■■□□ 2.11
TOP3B-215ENST00000470338 BICRAQ9NZM4 1560 aa28.24■■■□□ 2.11
TOP3B-215ENST00000470338 SCRIBQ14160 1630 aa28.1■■■□□ 2.09
TOP3B-215ENST00000470338 DNAJC5BQ9UF47 199 aa27.93■■■□□ 2.06
TOP3B-215ENST00000470338 SHROOM4Q9ULL8 1493 aa27.91■■■□□ 2.06
TOP3B-215ENST00000470338 EIF4G1Q04637 1599 aaKnown RBP27.48■■□□□ 1.99
TOP3B-215ENST00000470338 CC2D2AQ9P2K1 1620 aa27.41■■□□□ 1.98
TOP3B-215ENST00000470338 CECR2Q9BXF3 1484 aa27.21■■□□□ 1.95
TOP3B-215ENST00000470338 SMARCA4P51532 1647 aa26.9■■□□□ 1.9
TOP3B-215ENST00000470338 BAZ1AQ9NRL2 1556 aaPredicted RBP26.85■■□□□ 1.89
TOP3B-215ENST00000470338 NCAPD3P42695 1498 aa26.81■■□□□ 1.88
TOP3B-215ENST00000470338 ATAD2BQ9ULI0 1458 aa26.79■■□□□ 1.88
TOP3B-215ENST00000470338 SMARCA2P51531 1590 aa26.75■■□□□ 1.87
TOP3B-215ENST00000470338 MROH2BQ7Z745 1585 aa26.69■■□□□ 1.86
TOP3B-215ENST00000470338 PEG3Q9GZU2 1588 aa26.67■■□□□ 1.86
TOP3B-215ENST00000470338 HMGXB3Q12766 1538 aa26.65■■□□□ 1.86
TOP3B-215ENST00000470338 BAZ1BQ9UIG0 1483 aaKnown RBP26.54■■□□□ 1.84
TOP3B-215ENST00000470338 WIZO95785 1651 aa26.41■■□□□ 1.82
TOP3B-215ENST00000470338 RSF1Q96T23 1441 aaPredicted RBP26.34■■□□□ 1.81
TOP3B-215ENST00000470338 NESP48681 1621 aa26.17■■□□□ 1.78
TOP3B-215ENST00000470338 LAMC3Q9Y6N6 1575 aa26.11■■□□□ 1.77
TOP3B-215ENST00000470338 TOP2AP11388 1531 aaKnown RBP26.1■■□□□ 1.77
TOP3B-215ENST00000470338 ERCC6Q03468 1493 aa26.07■■□□□ 1.76
TOP3B-215ENST00000470338 CADPSQ9ULU8 1353 aa26■■□□□ 1.75
TOP3B-215ENST00000470338 PDS5BQ9NTI5 1447 aa25.91■■□□□ 1.74
TOP3B-215ENST00000470338 KIF21AQ7Z4S6 1674 aa25.9■■□□□ 1.74
TOP3B-215ENST00000470338 CUX2O14529 1486 aa25.88■■□□□ 1.73
TOP3B-215ENST00000470338 CFTRP13569 1480 aa25.83■■□□□ 1.73
TOP3B-215ENST00000470338 THOC2Q8NI27 1593 aaKnown RBP25.82■■□□□ 1.72
TOP3B-215ENST00000470338 CCDC88BA6NC98 1476 aa25.81■■□□□ 1.72
TOP3B-215ENST00000470338 FANCD2Q9BXW9 1451 aa25.69■■□□□ 1.7
TOP3B-215ENST00000470338 PRDM2Q13029 1718 aa25.68■■□□□ 1.7
TOP3B-215ENST00000470338 MRC2Q9UBG0 1479 aa25.66■■□□□ 1.7
TOP3B-215ENST00000470338 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
TOP3B-215ENST00000470338 WDR62O43379 1518 aa25.59■■□□□ 1.69
TOP3B-215ENST00000470338 SUPT5HO00267 1087 aaKnown RBP25.54■■□□□ 1.68
TOP3B-215ENST00000470338 URB2Q14146 1524 aaKnown RBP25.45■■□□□ 1.66
TOP3B-215ENST00000470338 ABCC8Q09428 1581 aa25.28■■□□□ 1.64
TOP3B-215ENST00000470338 TOPBP1Q92547 1522 aa25.27■■□□□ 1.64
TOP3B-215ENST00000470338 DNAJC5Q9H3Z4 198 aa25.25■■□□□ 1.63
TOP3B-215ENST00000470338 DNMBPQ6XZF7 1577 aa25.24■■□□□ 1.63
TOP3B-215ENST00000470338 IFT140Q96RY7 1462 aa25.14■■□□□ 1.61
TOP3B-215ENST00000470338 POLA1P09884 1462 aaPredicted RBP25.04■■□□□ 1.6
TOP3B-215ENST00000470338 CUX1P39880 1505 aa25.04■■□□□ 1.6
TOP3B-215ENST00000470338 TARBP1Q13395 1621 aaKnown RBP25.04■■□□□ 1.6
TOP3B-215ENST00000470338 ZNF608Q9ULD9 1512 aaPredicted RBP25.03■■□□□ 1.6
TOP3B-215ENST00000470338 FGD5Q6ZNL6 1462 aa24.96■■□□□ 1.59
TOP3B-215ENST00000470338 SOGA1O94964 1423 aa24.95■■□□□ 1.58
TOP3B-215ENST00000470338 RAD54L2Q9Y4B4 1467 aa24.94■■□□□ 1.58
TOP3B-215ENST00000470338 EIF4G3O43432 1585 aaKnown RBP24.93■■□□□ 1.58
TOP3B-215ENST00000470338 AQRO60306 1485 aaKnown RBP eCLIP24.88■■□□□ 1.579e-8■■■□□ 16.9
TOP3B-215ENST00000470338 WDR97A6NE52 1622 aa24.83■■□□□ 1.56
TOP3B-215ENST00000470338 WRNQ14191 1432 aaPredicted RBP eCLIP24.82■■□□□ 1.56
TOP3B-215ENST00000470338 BIVM-ERCC5R4GMW8 1640 aa24.82■■□□□ 1.56
TOP3B-215ENST00000470338 TOP2BQ02880 1626 aa24.81■■□□□ 1.56
TOP3B-215ENST00000470338 TDRD9Q8NDG6 1382 aaKnown RBP24.8■■□□□ 1.56
TOP3B-215ENST00000470338 OSCARQ8IYS5 282 aa24.79■■□□□ 1.56
TOP3B-215ENST00000470338 SYNJ1O43426 1573 aa24.78■■□□□ 1.56
TOP3B-215ENST00000470338 ABCA10Q8WWZ4 1543 aa24.73■■□□□ 1.55
TOP3B-215ENST00000470338 CHD1O14646 1710 aa24.67■■□□□ 1.54
TOP3B-215ENST00000470338 GRIN2BQ13224 1484 aa24.66■■□□□ 1.54
TOP3B-215ENST00000470338 GAPVD1Q14C86 1478 aa24.65■■□□□ 1.54
TOP3B-215ENST00000470338 ABCA5Q8WWZ7 1642 aa24.65■■□□□ 1.54
TOP3B-215ENST00000470338 PBRM1Q86U86 1689 aa24.64■■□□□ 1.53
TOP3B-215ENST00000470338 SNAPC4Q5SXM2 1469 aa24.63■■□□□ 1.53
TOP3B-215ENST00000470338 MAGI1Q96QZ7 1491 aaPredicted RBP24.61■■□□□ 1.53
TOP3B-215ENST00000470338 FBLN2P98095 1184 aa24.56■■□□□ 1.52
TOP3B-215ENST00000470338 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
TOP3B-215ENST00000470338 CHMP7Q8WUX9 453 aaPredicted RBP24.51■■□□□ 1.51
TOP3B-215ENST00000470338 ERICH3Q5RHP9 1530 aa24.44■■□□□ 1.5
TOP3B-215ENST00000470338 RIMBP3CA6NJZ7 1639 aa24.42■■□□□ 1.5
TOP3B-215ENST00000470338 RIMBP3BA6NNM3 1639 aa24.42■■□□□ 1.5
TOP3B-215ENST00000470338 RIMBP3Q9UFD9 1639 aa24.42■■□□□ 1.5
TOP3B-215ENST00000470338 ADAMTS12P58397 1594 aa24.41■■□□□ 1.5
TOP3B-215ENST00000470338 CLASP1Q7Z460 1538 aa24.39■■□□□ 1.49
TOP3B-215ENST00000470338 ARHGEF11O15085 1522 aa24.38■■□□□ 1.49
TOP3B-215ENST00000470338 FHAD1B1AJZ9 1412 aa24.36■■□□□ 1.49
TOP3B-215ENST00000470338 GRIN2AQ12879 1464 aa24.34■■□□□ 1.49
TOP3B-215ENST00000470338 KIF27Q86VH2 1401 aa24.31■■□□□ 1.48
TOP3B-215ENST00000470338 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
TOP3B-215ENST00000470338 IGF1RP08069 1367 aa24.26■■□□□ 1.47
TOP3B-215ENST00000470338 NUP160Q12769 1436 aa24.26■■□□□ 1.47
TOP3B-215ENST00000470338 CEP170Q5SW79 1584 aa24.24■■□□□ 1.47
TOP3B-215ENST00000470338 CUL7Q14999 1698 aa24.2■■□□□ 1.46
TOP3B-215ENST00000470338 ARAP1Q96P48 1450 aa24.18■■□□□ 1.46
TOP3B-215ENST00000470338 CYB5RLQ6IPT4 315 aa24.15■■□□□ 1.46
TOP3B-215ENST00000470338 SHROOM2Q13796 1616 aa24.11■■□□□ 1.45
TOP3B-215ENST00000470338 CARMIL1Q5VZK9 1371 aa24.09■■□□□ 1.45
TOP3B-215ENST00000470338 RUSC2Q8N2Y8 1516 aa24.07■■□□□ 1.44
TOP3B-215ENST00000470338 ERCC6L2Q5T890 1561 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms