RNA–Protein interactions for RNA: ENST00000468892.5

ABCF3-207, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 3

Gene ABCF3, Length 1,360 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-207ENST00000468892 NISCHQ9Y2I1 1504 aa42.41■■■■■ 4.38
ABCF3-207ENST00000468892 CCDC180Q9P1Z9 1646 aa37.1■■■■□ 3.53
ABCF3-207ENST00000468892 ZCCHC6Q5VYS8 1495 aaKnown RBP35.6■■■■□ 3.29
ABCF3-207ENST00000468892 DCAF1Q9Y4B6 1507 aa35.17■■■■□ 3.22
ABCF3-207ENST00000468892 DCAF8L2P0C7V8 631 aa35.03■■■■□ 3.2
ABCF3-207ENST00000468892 ABCC9O60706 1549 aa35.02■■■■□ 3.2
ABCF3-207ENST00000468892 MYO15BQ96JP2 1530 aa34.82■■■■□ 3.17
ABCF3-207ENST00000468892 NACADO15069 1562 aa34.6■■■■□ 3.13
ABCF3-207ENST00000468892 SHROOM4Q9ULL8 1493 aa34.39■■■■□ 3.1
ABCF3-207ENST00000468892 RB1CC1Q8TDY2 1594 aa34.31■■■■□ 3.08
ABCF3-207ENST00000468892 SCRIBQ14160 1630 aa33.96■■■■□ 3.03
ABCF3-207ENST00000468892 UNC13AQ9UPW8 1703 aa33.42■■■□□ 2.94
ABCF3-207ENST00000468892 SUPT5HO00267 1087 aaKnown RBP33.13■■■□□ 2.89
ABCF3-207ENST00000468892 BICRAQ9NZM4 1560 aa33.11■■■□□ 2.89
ABCF3-207ENST00000468892 PABPN1Q86U42 306 aaKnown RBP eCLIP32.98■■■□□ 2.871e-6■■■□□ 18.9
ABCF3-207ENST00000468892 CECR2Q9BXF3 1484 aa32.85■■■□□ 2.85
ABCF3-207ENST00000468892 RSF1Q96T23 1441 aaPredicted RBP32.83■■■□□ 2.85
ABCF3-207ENST00000468892 BAZ1AQ9NRL2 1556 aaPredicted RBP32.81■■■□□ 2.84
ABCF3-207ENST00000468892 MROH2BQ7Z745 1585 aa32.68■■■□□ 2.82
ABCF3-207ENST00000468892 SMARCA4P51532 1647 aa32.61■■■□□ 2.81
ABCF3-207ENST00000468892 WIZO95785 1651 aa32.39■■■□□ 2.78
ABCF3-207ENST00000468892 PEG3Q9GZU2 1588 aa32.26■■■□□ 2.75
ABCF3-207ENST00000468892 SMARCA2P51531 1590 aa32.18■■■□□ 2.74
ABCF3-207ENST00000468892 EIF4G1Q04637 1599 aaKnown RBP32.18■■■□□ 2.74
ABCF3-207ENST00000468892 TOP2AP11388 1531 aaKnown RBP32.17■■■□□ 2.74
ABCF3-207ENST00000468892 ATAD2BQ9ULI0 1458 aa32.1■■■□□ 2.73
ABCF3-207ENST00000468892 BAZ1BQ9UIG0 1483 aaKnown RBP31.96■■■□□ 2.71
ABCF3-207ENST00000468892 NCAPD3P42695 1498 aa31.89■■■□□ 2.7
ABCF3-207ENST00000468892 HMGXB3Q12766 1538 aa31.86■■■□□ 2.69
ABCF3-207ENST00000468892 CCDC88BA6NC98 1476 aa31.8■■■□□ 2.68
ABCF3-207ENST00000468892 DNAJC5BQ9UF47 199 aa31.78■■■□□ 2.68
ABCF3-207ENST00000468892 CC2D2AQ9P2K1 1620 aa31.71■■■□□ 2.67
ABCF3-207ENST00000468892 CHIC1Q5VXU3 224 aa31.68■■■□□ 2.66
ABCF3-207ENST00000468892 TRIM41Q8WV44 630 aa31.27■■■□□ 2.6
ABCF3-207ENST00000468892 CFTRP13569 1480 aa31.13■■■□□ 2.57
ABCF3-207ENST00000468892 CADPSQ9ULU8 1353 aa31.07■■■□□ 2.56
ABCF3-207ENST00000468892 ABCC8Q09428 1581 aa31.01■■■□□ 2.55
ABCF3-207ENST00000468892 PRDM2Q13029 1718 aa30.97■■■□□ 2.55
ABCF3-207ENST00000468892 WRNQ14191 1432 aaPredicted RBP eCLIP30.96■■■□□ 2.55
ABCF3-207ENST00000468892 LAMC3Q9Y6N6 1575 aa30.84■■■□□ 2.53
ABCF3-207ENST00000468892 SYNJ1O43426 1573 aa30.73■■■□□ 2.51
ABCF3-207ENST00000468892 TOP2BQ02880 1626 aa30.71■■■□□ 2.51
ABCF3-207ENST00000468892 FANCD2Q9BXW9 1451 aa30.7■■■□□ 2.5
ABCF3-207ENST00000468892 BIVM-ERCC5R4GMW8 1640 aa30.67■■■□□ 2.5
ABCF3-207ENST00000468892 PDS5BQ9NTI5 1447 aa30.66■■■□□ 2.5
ABCF3-207ENST00000468892 NESP48681 1621 aa30.65■■■□□ 2.5
ABCF3-207ENST00000468892 EEA1Q15075 1411 aa30.61■■■□□ 2.49
ABCF3-207ENST00000468892 CUX1P39880 1505 aa30.58■■■□□ 2.49
ABCF3-207ENST00000468892 CEP164Q9UPV0 1460 aa30.55■■■□□ 2.48
ABCF3-207ENST00000468892 FAM9AQ8IZU1 332 aaPredicted RBP30.54■■■□□ 2.48
ABCF3-207ENST00000468892 SOGA1O94964 1423 aa30.44■■■□□ 2.46
ABCF3-207ENST00000468892 DNMBPQ6XZF7 1577 aa30.43■■■□□ 2.46
ABCF3-207ENST00000468892 LOC105371045A0A1W2PR82 267 aa30.39■■■□□ 2.45
ABCF3-207ENST00000468892 CSRNP3Q8WYN3 585 aa30.35■■■□□ 2.45
ABCF3-207ENST00000468892 TOPBP1Q92547 1522 aa30.34■■■□□ 2.45
ABCF3-207ENST00000468892 KIF21AQ7Z4S6 1674 aa30.33■■■□□ 2.45
ABCF3-207ENST00000468892 FGD5Q6ZNL6 1462 aa30.3■■■□□ 2.44
ABCF3-207ENST00000468892 RUSC2Q8N2Y8 1516 aa30.27■■■□□ 2.44
ABCF3-207ENST00000468892 URB2Q14146 1524 aaKnown RBP30.25■■■□□ 2.43
ABCF3-207ENST00000468892 KIF27Q86VH2 1401 aa30.25■■■□□ 2.43
ABCF3-207ENST00000468892 MRC2Q9UBG0 1479 aa30.2■■■□□ 2.43
ABCF3-207ENST00000468892 POLA1P09884 1462 aaPredicted RBP30.16■■■□□ 2.42
ABCF3-207ENST00000468892 ERCC6Q03468 1493 aa30.15■■■□□ 2.42
ABCF3-207ENST00000468892 CUX2O14529 1486 aa30.11■■■□□ 2.41
ABCF3-207ENST00000468892 KIF21BO75037 1637 aa30.1■■■□□ 2.41
ABCF3-207ENST00000468892 GOLGA3Q08378 1498 aa30.09■■■□□ 2.41
ABCF3-207ENST00000468892 ABCA10Q8WWZ4 1543 aa30.08■■■□□ 2.41
ABCF3-207ENST00000468892 EHMT2Q96KQ7 1210 aa30.03■■■□□ 2.4
ABCF3-207ENST00000468892 WDR62O43379 1518 aa30.01■■■□□ 2.39
ABCF3-207ENST00000468892 RAD54L2Q9Y4B4 1467 aa30.01■■■□□ 2.39
ABCF3-207ENST00000468892 TNIKQ9UKE5 1360 aa29.98■■■□□ 2.39
ABCF3-207ENST00000468892 UBTFP17480 764 aaKnown RBP29.96■■■□□ 2.39
ABCF3-207ENST00000468892 PRXQ9BXM0 1461 aa29.95■■■□□ 2.38
ABCF3-207ENST00000468892 ERICH3Q5RHP9 1530 aa29.94■■■□□ 2.38
ABCF3-207ENST00000468892 WDR97A6NE52 1622 aa29.91■■■□□ 2.38
ABCF3-207ENST00000468892 IGF1RP08069 1367 aa29.91■■■□□ 2.38
ABCF3-207ENST00000468892 THOC2Q8NI27 1593 aaKnown RBP29.88■■■□□ 2.37
ABCF3-207ENST00000468892 TARBP1Q13395 1621 aaKnown RBP29.86■■■□□ 2.37
ABCF3-207ENST00000468892 IFT140Q96RY7 1462 aa29.85■■■□□ 2.37
ABCF3-207ENST00000468892 RAPGEF2Q9Y4G8 1499 aa29.85■■■□□ 2.37
ABCF3-207ENST00000468892 CARMIL1Q5VZK9 1371 aa29.8■■■□□ 2.36
ABCF3-207ENST00000468892 GAPVD1Q14C86 1478 aa29.79■■■□□ 2.36
ABCF3-207ENST00000468892 ABCA5Q8WWZ7 1642 aa29.79■■■□□ 2.36
ABCF3-207ENST00000468892 TDRD9Q8NDG6 1382 aaKnown RBP29.76■■■□□ 2.35
ABCF3-207ENST00000468892 CUL7Q14999 1698 aa29.76■■■□□ 2.35
ABCF3-207ENST00000468892 CEP162Q5TB80 1403 aa29.75■■■□□ 2.35
ABCF3-207ENST00000468892 DNAJC5Q9H3Z4 198 aa29.74■■■□□ 2.35
ABCF3-207ENST00000468892 GRIN2BQ13224 1484 aa29.6■■■□□ 2.33
ABCF3-207ENST00000468892 CLIP1P30622 1438 aa29.58■■■□□ 2.33
ABCF3-207ENST00000468892 AQRO60306 1485 aaKnown RBP eCLIP29.58■■■□□ 2.336e-6■■■■□ 25.1
ABCF3-207ENST00000468892 PBRM1Q86U86 1689 aa29.57■■■□□ 2.32
ABCF3-207ENST00000468892 ZNF608Q9ULD9 1512 aaPredicted RBP29.52■■■□□ 2.32
ABCF3-207ENST00000468892 FHAD1B1AJZ9 1412 aa29.5■■■□□ 2.31
ABCF3-207ENST00000468892 EIF4G3O43432 1585 aaKnown RBP29.48■■■□□ 2.31
ABCF3-207ENST00000468892 ADAMTS12P58397 1594 aa29.42■■■□□ 2.3
ABCF3-207ENST00000468892 MAGI1Q96QZ7 1491 aaPredicted RBP29.38■■■□□ 2.29
ABCF3-207ENST00000468892 CTTNBP2Q8WZ74 1663 aa29.35■■■□□ 2.29
ABCF3-207ENST00000468892 RANGAP1P46060 587 aaPredicted RBP29.35■■■□□ 2.29
ABCF3-207ENST00000468892 SNAPC4Q5SXM2 1469 aa29.34■■■□□ 2.29
ABCF3-207ENST00000468892 VPS8Q8N3P4 1428 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms