RNA–Protein interactions for RNA: ENST00000468385.1

PTPN7-207, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 2

Gene PTPN7, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-207ENST00000468385 NISCHQ9Y2I1 1504 aa33.18■■■□□ 2.9
PTPN7-207ENST00000468385 ABCC9O60706 1549 aa30.02■■■□□ 2.4
PTPN7-207ENST00000468385 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
PTPN7-207ENST00000468385 RB1CC1Q8TDY2 1594 aa28.48■■■□□ 2.15
PTPN7-207ENST00000468385 DNAJC5BQ9UF47 199 aa28.37■■■□□ 2.13
PTPN7-207ENST00000468385 NACADO15069 1562 aa28.25■■■□□ 2.11
PTPN7-207ENST00000468385 DCAF8L2P0C7V8 631 aa28.04■■■□□ 2.08
PTPN7-207ENST00000468385 PABPN1Q86U42 306 aaKnown RBP eCLIP27.94■■■□□ 2.06
PTPN7-207ENST00000468385 UNC13AQ9UPW8 1703 aa27.84■■■□□ 2.05
PTPN7-207ENST00000468385 MYO15BQ96JP2 1530 aa27.82■■■□□ 2.04
PTPN7-207ENST00000468385 BICRAQ9NZM4 1560 aa27.69■■■□□ 2.02
PTPN7-207ENST00000468385 ZCCHC6Q5VYS8 1495 aaKnown RBP27.47■■□□□ 1.99
PTPN7-207ENST00000468385 DCAF1Q9Y4B6 1507 aa27.4■■□□□ 1.98
PTPN7-207ENST00000468385 SHROOM4Q9ULL8 1493 aa27.28■■□□□ 1.96
PTPN7-207ENST00000468385 SCRIBQ14160 1630 aa27.17■■□□□ 1.94
PTPN7-207ENST00000468385 CC2D2AQ9P2K1 1620 aa27.11■■□□□ 1.93
PTPN7-207ENST00000468385 CECR2Q9BXF3 1484 aa27.06■■□□□ 1.92
PTPN7-207ENST00000468385 EIF4G1Q04637 1599 aaKnown RBP27.02■■□□□ 1.92
PTPN7-207ENST00000468385 DNAJC5Q9H3Z4 198 aa26.16■■□□□ 1.78
PTPN7-207ENST00000468385 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
PTPN7-207ENST00000468385 ATAD2BQ9ULI0 1458 aa26■■□□□ 1.75
PTPN7-207ENST00000468385 CUX2O14529 1486 aa25.95■■□□□ 1.74
PTPN7-207ENST00000468385 ERCC6Q03468 1493 aa25.91■■□□□ 1.74
PTPN7-207ENST00000468385 SMARCA4P51532 1647 aa25.91■■□□□ 1.74
PTPN7-207ENST00000468385 SMARCA2P51531 1590 aa25.89■■□□□ 1.73
PTPN7-207ENST00000468385 HMGXB3Q12766 1538 aa25.88■■□□□ 1.73
PTPN7-207ENST00000468385 NESP48681 1621 aa25.75■■□□□ 1.71
PTPN7-207ENST00000468385 BAZ1AQ9NRL2 1556 aaPredicted RBP25.75■■□□□ 1.71
PTPN7-207ENST00000468385 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
PTPN7-207ENST00000468385 PEG3Q9GZU2 1588 aa25.68■■□□□ 1.7
PTPN7-207ENST00000468385 MROH2BQ7Z745 1585 aa25.56■■□□□ 1.68
PTPN7-207ENST00000468385 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
PTPN7-207ENST00000468385 LAMC3Q9Y6N6 1575 aa25.52■■□□□ 1.68
PTPN7-207ENST00000468385 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.65
PTPN7-207ENST00000468385 PDS5BQ9NTI5 1447 aa25.38■■□□□ 1.65
PTPN7-207ENST00000468385 CADPSQ9ULU8 1353 aa25.3■■□□□ 1.64
PTPN7-207ENST00000468385 WIZO95785 1651 aa25.24■■□□□ 1.63
PTPN7-207ENST00000468385 MRC2Q9UBG0 1479 aa25.18■■□□□ 1.62
PTPN7-207ENST00000468385 WDR62O43379 1518 aa25.14■■□□□ 1.62
PTPN7-207ENST00000468385 CEP164Q9UPV0 1460 aa25.03■■□□□ 1.6
PTPN7-207ENST00000468385 FANCD2Q9BXW9 1451 aa25.01■■□□□ 1.59
PTPN7-207ENST00000468385 CFTRP13569 1480 aa24.98■■□□□ 1.59
PTPN7-207ENST00000468385 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
PTPN7-207ENST00000468385 TOP2AP11388 1531 aaKnown RBP24.91■■□□□ 1.58
PTPN7-207ENST00000468385 TRIM41Q8WV44 630 aa24.91■■□□□ 1.58
PTPN7-207ENST00000468385 URB2Q14146 1524 aaKnown RBP24.82■■□□□ 1.56
PTPN7-207ENST00000468385 OSCARQ8IYS5 282 aa24.73■■□□□ 1.55
PTPN7-207ENST00000468385 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
PTPN7-207ENST00000468385 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.54
PTPN7-207ENST00000468385 IFT140Q96RY7 1462 aa24.55■■□□□ 1.52
PTPN7-207ENST00000468385 ZNF608Q9ULD9 1512 aaPredicted RBP24.55■■□□□ 1.52
PTPN7-207ENST00000468385 TOPBP1Q92547 1522 aa24.51■■□□□ 1.51
PTPN7-207ENST00000468385 RIMBP3CA6NJZ7 1639 aa24.43■■□□□ 1.5
PTPN7-207ENST00000468385 RIMBP3BA6NNM3 1639 aa24.43■■□□□ 1.5
PTPN7-207ENST00000468385 RIMBP3Q9UFD9 1639 aa24.43■■□□□ 1.5
PTPN7-207ENST00000468385 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
PTPN7-207ENST00000468385 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
PTPN7-207ENST00000468385 EIF4G3O43432 1585 aaKnown RBP24.38■■□□□ 1.49
PTPN7-207ENST00000468385 ARHGEF11O15085 1522 aa24.35■■□□□ 1.49
PTPN7-207ENST00000468385 TARBP1Q13395 1621 aaKnown RBP24.31■■□□□ 1.48
PTPN7-207ENST00000468385 AQRO60306 1485 aaKnown RBP eCLIP24.3■■□□□ 1.487e-8■■■■□ 26
PTPN7-207ENST00000468385 POLA1P09884 1462 aaPredicted RBP24.26■■□□□ 1.47
PTPN7-207ENST00000468385 CHD1O14646 1710 aa24.22■■□□□ 1.47
PTPN7-207ENST00000468385 RAD54L2Q9Y4B4 1467 aa24.18■■□□□ 1.46
PTPN7-207ENST00000468385 CYB5RLQ6IPT4 315 aa24.16■■□□□ 1.46
PTPN7-207ENST00000468385 SOGA1O94964 1423 aa24.13■■□□□ 1.45
PTPN7-207ENST00000468385 FBLN2P98095 1184 aa24.13■■□□□ 1.45
PTPN7-207ENST00000468385 TDRD9Q8NDG6 1382 aaKnown RBP24.11■■□□□ 1.45
PTPN7-207ENST00000468385 ARAP1Q96P48 1450 aa24.11■■□□□ 1.45
PTPN7-207ENST00000468385 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
PTPN7-207ENST00000468385 WDR97A6NE52 1622 aa24.04■■□□□ 1.44
PTPN7-207ENST00000468385 SNAPC4Q5SXM2 1469 aa24.04■■□□□ 1.44
PTPN7-207ENST00000468385 CUX1P39880 1505 aa24.03■■□□□ 1.44
PTPN7-207ENST00000468385 CLASP1Q7Z460 1538 aa23.98■■□□□ 1.43
PTPN7-207ENST00000468385 MAGI1Q96QZ7 1491 aaPredicted RBP23.96■■□□□ 1.43
PTPN7-207ENST00000468385 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
PTPN7-207ENST00000468385 TRHP20396 242 aaPredicted RBP23.94■■□□□ 1.42
PTPN7-207ENST00000468385 CHMP7Q8WUX9 453 aaPredicted RBP23.94■■□□□ 1.42
PTPN7-207ENST00000468385 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
PTPN7-207ENST00000468385 SYNJ2O15056 1496 aa23.89■■□□□ 1.42
PTPN7-207ENST00000468385 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
PTPN7-207ENST00000468385 PBRM1Q86U86 1689 aa23.82■■□□□ 1.4
PTPN7-207ENST00000468385 ABCA10Q8WWZ4 1543 aa23.79■■□□□ 1.4
PTPN7-207ENST00000468385 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
PTPN7-207ENST00000468385 SUPT5HO00267 1087 aaKnown RBP23.69■■□□□ 1.38
PTPN7-207ENST00000468385 GRIN2AQ12879 1464 aa23.64■■□□□ 1.38
PTPN7-207ENST00000468385 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.37
PTPN7-207ENST00000468385 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
PTPN7-207ENST00000468385 ERCC6L2Q5T890 1561 aa23.6■■□□□ 1.37
PTPN7-207ENST00000468385 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
PTPN7-207ENST00000468385 NUP160Q12769 1436 aa23.59■■□□□ 1.37
PTPN7-207ENST00000468385 TOP2BQ02880 1626 aa23.58■■□□□ 1.36
PTPN7-207ENST00000468385 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
PTPN7-207ENST00000468385 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
PTPN7-207ENST00000468385 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
PTPN7-207ENST00000468385 ERICH3Q5RHP9 1530 aa23.49■■□□□ 1.35
PTPN7-207ENST00000468385 SHROOM2Q13796 1616 aa23.48■■□□□ 1.35
PTPN7-207ENST00000468385 PRG4Q92954 1404 aaPredicted RBP23.35■■□□□ 1.33
PTPN7-207ENST00000468385 AEBP2Q6ZN18 517 aaPredicted RBP23.35■■□□□ 1.33
PTPN7-207ENST00000468385 JPH4Q96JJ6 628 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms