RNA–Protein interactions for RNA: ENST00000466601.5

DNMT3A-208, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 2

Gene DNMT3A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-208ENST00000466601 NISCHQ9Y2I1 1504 aa34.6■■■■□ 3.13
DNMT3A-208ENST00000466601 CCDC180Q9P1Z9 1646 aa30.6■■■□□ 2.49
DNMT3A-208ENST00000466601 ABCC9O60706 1549 aa29.76■■■□□ 2.36
DNMT3A-208ENST00000466601 DCAF8L2P0C7V8 631 aa28.88■■■□□ 2.21
DNMT3A-208ENST00000466601 ZCCHC6Q5VYS8 1495 aaKnown RBP28.85■■■□□ 2.21
DNMT3A-208ENST00000466601 NACADO15069 1562 aa28.74■■■□□ 2.19
DNMT3A-208ENST00000466601 RB1CC1Q8TDY2 1594 aa28.71■■■□□ 2.19
DNMT3A-208ENST00000466601 MYO15BQ96JP2 1530 aa28.64■■■□□ 2.18
DNMT3A-208ENST00000466601 DCAF1Q9Y4B6 1507 aa28.62■■■□□ 2.17
DNMT3A-208ENST00000466601 UNC13AQ9UPW8 1703 aa28.03■■■□□ 2.08
DNMT3A-208ENST00000466601 SCRIBQ14160 1630 aa27.97■■■□□ 2.07
DNMT3A-208ENST00000466601 PABPN1Q86U42 306 aaKnown RBP eCLIP27.89■■■□□ 2.06
DNMT3A-208ENST00000466601 BICRAQ9NZM4 1560 aa27.82■■■□□ 2.04
DNMT3A-208ENST00000466601 SHROOM4Q9ULL8 1493 aa27.55■■■□□ 2
DNMT3A-208ENST00000466601 DNAJC5BQ9UF47 199 aa27.12■■□□□ 1.93
DNMT3A-208ENST00000466601 EIF4G1Q04637 1599 aaKnown RBP27.08■■□□□ 1.93
DNMT3A-208ENST00000466601 CECR2Q9BXF3 1484 aa26.93■■□□□ 1.9
DNMT3A-208ENST00000466601 CC2D2AQ9P2K1 1620 aa26.9■■□□□ 1.9
DNMT3A-208ENST00000466601 BAZ1AQ9NRL2 1556 aaPredicted RBP26.79■■□□□ 1.88
DNMT3A-208ENST00000466601 SMARCA4P51532 1647 aa26.77■■□□□ 1.88
DNMT3A-208ENST00000466601 MROH2BQ7Z745 1585 aa26.67■■□□□ 1.86
DNMT3A-208ENST00000466601 ATAD2BQ9ULI0 1458 aa26.59■■□□□ 1.85
DNMT3A-208ENST00000466601 SMARCA2P51531 1590 aa26.55■■□□□ 1.84
DNMT3A-208ENST00000466601 NCAPD3P42695 1498 aa26.54■■□□□ 1.84
DNMT3A-208ENST00000466601 PEG3Q9GZU2 1588 aa26.5■■□□□ 1.83
DNMT3A-208ENST00000466601 RSF1Q96T23 1441 aaPredicted RBP26.48■■□□□ 1.83
DNMT3A-208ENST00000466601 HMGXB3Q12766 1538 aa26.39■■□□□ 1.82
DNMT3A-208ENST00000466601 WIZO95785 1651 aa26.38■■□□□ 1.81
DNMT3A-208ENST00000466601 BAZ1BQ9UIG0 1483 aaKnown RBP26.38■■□□□ 1.81
DNMT3A-208ENST00000466601 TOP2AP11388 1531 aaKnown RBP26.12■■□□□ 1.77
DNMT3A-208ENST00000466601 SUPT5HO00267 1087 aaKnown RBP26.04■■□□□ 1.76
DNMT3A-208ENST00000466601 CCDC88BA6NC98 1476 aa25.84■■□□□ 1.73
DNMT3A-208ENST00000466601 NESP48681 1621 aa25.82■■□□□ 1.72
DNMT3A-208ENST00000466601 CADPSQ9ULU8 1353 aa25.8■■□□□ 1.72
DNMT3A-208ENST00000466601 LAMC3Q9Y6N6 1575 aa25.78■■□□□ 1.72
DNMT3A-208ENST00000466601 CFTRP13569 1480 aa25.67■■□□□ 1.7
DNMT3A-208ENST00000466601 ERCC6Q03468 1493 aa25.63■■□□□ 1.69
DNMT3A-208ENST00000466601 PDS5BQ9NTI5 1447 aa25.63■■□□□ 1.69
DNMT3A-208ENST00000466601 FANCD2Q9BXW9 1451 aa25.48■■□□□ 1.67
DNMT3A-208ENST00000466601 KIF21AQ7Z4S6 1674 aa25.48■■□□□ 1.67
DNMT3A-208ENST00000466601 PRDM2Q13029 1718 aa25.43■■□□□ 1.66
DNMT3A-208ENST00000466601 CEP164Q9UPV0 1460 aa25.42■■□□□ 1.66
DNMT3A-208ENST00000466601 THOC2Q8NI27 1593 aaKnown RBP25.34■■□□□ 1.65
DNMT3A-208ENST00000466601 MRC2Q9UBG0 1479 aa25.33■■□□□ 1.65
DNMT3A-208ENST00000466601 CUX2O14529 1486 aa25.25■■□□□ 1.63
DNMT3A-208ENST00000466601 WDR62O43379 1518 aa25.22■■□□□ 1.63
DNMT3A-208ENST00000466601 URB2Q14146 1524 aaKnown RBP25.21■■□□□ 1.63
DNMT3A-208ENST00000466601 ABCC8Q09428 1581 aa25.12■■□□□ 1.61
DNMT3A-208ENST00000466601 TOPBP1Q92547 1522 aa25.1■■□□□ 1.61
DNMT3A-208ENST00000466601 DNMBPQ6XZF7 1577 aa25.07■■□□□ 1.6
DNMT3A-208ENST00000466601 CUX1P39880 1505 aa25■■□□□ 1.59
DNMT3A-208ENST00000466601 WRNQ14191 1432 aaPredicted RBP eCLIP24.95■■□□□ 1.59
DNMT3A-208ENST00000466601 POLA1P09884 1462 aaPredicted RBP24.89■■□□□ 1.58
DNMT3A-208ENST00000466601 IFT140Q96RY7 1462 aa24.89■■□□□ 1.57
DNMT3A-208ENST00000466601 FGD5Q6ZNL6 1462 aa24.88■■□□□ 1.57
DNMT3A-208ENST00000466601 SYNJ1O43426 1573 aa24.84■■□□□ 1.57
DNMT3A-208ENST00000466601 TOP2BQ02880 1626 aa24.84■■□□□ 1.57
DNMT3A-208ENST00000466601 SOGA1O94964 1423 aa24.83■■□□□ 1.57
DNMT3A-208ENST00000466601 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.56
DNMT3A-208ENST00000466601 RAD54L2Q9Y4B4 1467 aa24.81■■□□□ 1.56
DNMT3A-208ENST00000466601 TARBP1Q13395 1621 aaKnown RBP24.78■■□□□ 1.56
DNMT3A-208ENST00000466601 ZNF608Q9ULD9 1512 aaPredicted RBP24.75■■□□□ 1.55
DNMT3A-208ENST00000466601 TDRD9Q8NDG6 1382 aaKnown RBP24.67■■□□□ 1.54
DNMT3A-208ENST00000466601 AQRO60306 1485 aaKnown RBP eCLIP24.65■■□□□ 1.542e-7■■■□□ 18.4
DNMT3A-208ENST00000466601 ABCA10Q8WWZ4 1543 aa24.65■■□□□ 1.54
DNMT3A-208ENST00000466601 EIF4G3O43432 1585 aaKnown RBP24.63■■□□□ 1.53
DNMT3A-208ENST00000466601 WDR97A6NE52 1622 aa24.61■■□□□ 1.53
DNMT3A-208ENST00000466601 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
DNMT3A-208ENST00000466601 GAPVD1Q14C86 1478 aa24.53■■□□□ 1.52
DNMT3A-208ENST00000466601 ABCA5Q8WWZ7 1642 aa24.5■■□□□ 1.51
DNMT3A-208ENST00000466601 GRIN2BQ13224 1484 aa24.49■■□□□ 1.51
DNMT3A-208ENST00000466601 DNAJC5Q9H3Z4 198 aa24.46■■□□□ 1.51
DNMT3A-208ENST00000466601 CHIC1Q5VXU3 224 aa24.44■■□□□ 1.5
DNMT3A-208ENST00000466601 SNAPC4Q5SXM2 1469 aa24.42■■□□□ 1.5
DNMT3A-208ENST00000466601 PBRM1Q86U86 1689 aa24.42■■□□□ 1.5
DNMT3A-208ENST00000466601 KIF27Q86VH2 1401 aa24.42■■□□□ 1.5
DNMT3A-208ENST00000466601 MAGI1Q96QZ7 1491 aaPredicted RBP24.39■■□□□ 1.5
DNMT3A-208ENST00000466601 ERICH3Q5RHP9 1530 aa24.35■■□□□ 1.49
DNMT3A-208ENST00000466601 FBLN2P98095 1184 aa24.34■■□□□ 1.49
DNMT3A-208ENST00000466601 OSCARQ8IYS5 282 aa24.31■■□□□ 1.48
DNMT3A-208ENST00000466601 CHMP7Q8WUX9 453 aaPredicted RBP24.31■■□□□ 1.48
DNMT3A-208ENST00000466601 SYNJ2O15056 1496 aa24.3■■□□□ 1.48
DNMT3A-208ENST00000466601 IGF1RP08069 1367 aa24.29■■□□□ 1.48
DNMT3A-208ENST00000466601 RUSC2Q8N2Y8 1516 aa24.28■■□□□ 1.48
DNMT3A-208ENST00000466601 CHD1O14646 1710 aa24.27■■□□□ 1.48
DNMT3A-208ENST00000466601 FHAD1B1AJZ9 1412 aa24.27■■□□□ 1.48
DNMT3A-208ENST00000466601 ADAMTS12P58397 1594 aa24.26■■□□□ 1.47
DNMT3A-208ENST00000466601 GRIN2AQ12879 1464 aa24.17■■□□□ 1.46
DNMT3A-208ENST00000466601 CARMIL1Q5VZK9 1371 aa24.16■■□□□ 1.46
DNMT3A-208ENST00000466601 CUL7Q14999 1698 aa24.16■■□□□ 1.46
DNMT3A-208ENST00000466601 EEA1Q15075 1411 aa24.11■■□□□ 1.45
DNMT3A-208ENST00000466601 CSRNP3Q8WYN3 585 aa24.09■■□□□ 1.45
DNMT3A-208ENST00000466601 FAM9AQ8IZU1 332 aaPredicted RBP24.07■■□□□ 1.44
DNMT3A-208ENST00000466601 NUP160Q12769 1436 aa24.05■■□□□ 1.44
DNMT3A-208ENST00000466601 RAPGEF2Q9Y4G8 1499 aa24.03■■□□□ 1.44
DNMT3A-208ENST00000466601 CLASP1Q7Z460 1538 aa24.03■■□□□ 1.44
DNMT3A-208ENST00000466601 CEP170Q5SW79 1584 aa24.03■■□□□ 1.44
DNMT3A-208ENST00000466601 PRXQ9BXM0 1461 aa24■■□□□ 1.43
DNMT3A-208ENST00000466601 KIAA0586Q9BVV6 1533 aa23.89■■□□□ 1.42
DNMT3A-208ENST00000466601 ARHGEF11O15085 1522 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms