RNA–Protein interactions for RNA: ENST00000466489.1

PMF1-204, Transcript of polyamine modulated factor 1, humanhuman

TSL 1 (best)

Gene PMF1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMF1-204ENST00000466489 NISCHQ9Y2I1 1504 aa23.53■■□□□ 1.36
PMF1-204ENST00000466489 CCDC180Q9P1Z9 1646 aa20.95■□□□□ 0.94
PMF1-204ENST00000466489 ABCC9O60706 1549 aa20.22■□□□□ 0.83
PMF1-204ENST00000466489 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.73
PMF1-204ENST00000466489 NACADO15069 1562 aa19.62■□□□□ 0.73
PMF1-204ENST00000466489 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
PMF1-204ENST00000466489 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
PMF1-204ENST00000466489 MYO15BQ96JP2 1530 aa19.54■□□□□ 0.72
PMF1-204ENST00000466489 DCAF1Q9Y4B6 1507 aa19.51■□□□□ 0.71
PMF1-204ENST00000466489 UNC13AQ9UPW8 1703 aa19.14■□□□□ 0.66
PMF1-204ENST00000466489 SCRIBQ14160 1630 aa19.06■□□□□ 0.64
PMF1-204ENST00000466489 BICRAQ9NZM4 1560 aa18.9■□□□□ 0.62
PMF1-204ENST00000466489 PABPN1Q86U42 306 aaKnown RBP eCLIP18.87■□□□□ 0.61
PMF1-204ENST00000466489 SHROOM4Q9ULL8 1493 aa18.85■□□□□ 0.61
PMF1-204ENST00000466489 EIF4G1Q04637 1599 aaKnown RBP18.45■□□□□ 0.54
PMF1-204ENST00000466489 CC2D2AQ9P2K1 1620 aa18.33■□□□□ 0.52
PMF1-204ENST00000466489 BAZ1AQ9NRL2 1556 aaPredicted RBP18.28■□□□□ 0.52
PMF1-204ENST00000466489 DNAJC5BQ9UF47 199 aa18.26■□□□□ 0.51
PMF1-204ENST00000466489 SMARCA4P51532 1647 aa18.25■□□□□ 0.51
PMF1-204ENST00000466489 CECR2Q9BXF3 1484 aa18.24■□□□□ 0.51
PMF1-204ENST00000466489 SMARCA2P51531 1590 aa18.15■□□□□ 0.5
PMF1-204ENST00000466489 MROH2BQ7Z745 1585 aa18.09■□□□□ 0.49
PMF1-204ENST00000466489 PEG3Q9GZU2 1588 aa18.06■□□□□ 0.48
PMF1-204ENST00000466489 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
PMF1-204ENST00000466489 NCAPD3P42695 1498 aa18.04■□□□□ 0.48
PMF1-204ENST00000466489 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
PMF1-204ENST00000466489 BAZ1BQ9UIG0 1483 aaKnown RBP17.99■□□□□ 0.47
PMF1-204ENST00000466489 WIZO95785 1651 aa17.95■□□□□ 0.46
PMF1-204ENST00000466489 RSF1Q96T23 1441 aaPredicted RBP17.95■□□□□ 0.46
PMF1-204ENST00000466489 TOP2AP11388 1531 aaKnown RBP17.8■□□□□ 0.44
PMF1-204ENST00000466489 SUPT5HO00267 1087 aaKnown RBP17.65■□□□□ 0.42
PMF1-204ENST00000466489 LAMC3Q9Y6N6 1575 aa17.61■□□□□ 0.41
PMF1-204ENST00000466489 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
PMF1-204ENST00000466489 CADPSQ9ULU8 1353 aa17.53■□□□□ 0.4
PMF1-204ENST00000466489 NESP48681 1621 aa17.5■□□□□ 0.39
PMF1-204ENST00000466489 ERCC6Q03468 1493 aa17.5■□□□□ 0.39
PMF1-204ENST00000466489 PDS5BQ9NTI5 1447 aa17.48■□□□□ 0.39
PMF1-204ENST00000466489 PRDM2Q13029 1718 aa17.48■□□□□ 0.39
PMF1-204ENST00000466489 CFTRP13569 1480 aa17.46■□□□□ 0.39
PMF1-204ENST00000466489 KIF21AQ7Z4S6 1674 aa17.4■□□□□ 0.38
PMF1-204ENST00000466489 CEP164Q9UPV0 1460 aa17.35■□□□□ 0.37
PMF1-204ENST00000466489 FANCD2Q9BXW9 1451 aa17.34■□□□□ 0.37
PMF1-204ENST00000466489 MRC2Q9UBG0 1479 aa17.27■□□□□ 0.36
PMF1-204ENST00000466489 THOC2Q8NI27 1593 aaKnown RBP17.27■□□□□ 0.35
PMF1-204ENST00000466489 CUX2O14529 1486 aa17.24■□□□□ 0.35
PMF1-204ENST00000466489 WDR62O43379 1518 aa17.2■□□□□ 0.34
PMF1-204ENST00000466489 DNAJC5Q9H3Z4 198 aa17.19■□□□□ 0.34
PMF1-204ENST00000466489 ABCC8Q09428 1581 aa17.17■□□□□ 0.34
PMF1-204ENST00000466489 URB2Q14146 1524 aaKnown RBP17.11■□□□□ 0.33
PMF1-204ENST00000466489 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
PMF1-204ENST00000466489 TOPBP1Q92547 1522 aa17.07■□□□□ 0.32
PMF1-204ENST00000466489 CUX1P39880 1505 aa16.99■□□□□ 0.31
PMF1-204ENST00000466489 WRNQ14191 1432 aaPredicted RBP eCLIP16.98■□□□□ 0.31
PMF1-204ENST00000466489 IFT140Q96RY7 1462 aa16.96■□□□□ 0.31
PMF1-204ENST00000466489 BIVM-ERCC5R4GMW8 1640 aa16.95■□□□□ 0.3
PMF1-204ENST00000466489 TOP2BQ02880 1626 aa16.94■□□□□ 0.3
PMF1-204ENST00000466489 POLA1P09884 1462 aaPredicted RBP16.93■□□□□ 0.3
PMF1-204ENST00000466489 FGD5Q6ZNL6 1462 aa16.93■□□□□ 0.3
PMF1-204ENST00000466489 SYNJ1O43426 1573 aa16.89■□□□□ 0.3
PMF1-204ENST00000466489 SOGA1O94964 1423 aa16.88■□□□□ 0.29
PMF1-204ENST00000466489 TARBP1Q13395 1621 aaKnown RBP16.87■□□□□ 0.29
PMF1-204ENST00000466489 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
PMF1-204ENST00000466489 RAD54L2Q9Y4B4 1467 aa16.82■□□□□ 0.28
PMF1-204ENST00000466489 EIF4G3O43432 1585 aaKnown RBP16.81■□□□□ 0.28
PMF1-204ENST00000466489 ABCA10Q8WWZ4 1543 aa16.78■□□□□ 0.28
PMF1-204ENST00000466489 ZNF608Q9ULD9 1512 aaPredicted RBP16.78■□□□□ 0.28
PMF1-204ENST00000466489 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
PMF1-204ENST00000466489 AQRO60306 1485 aaKnown RBP eCLIP16.73■□□□□ 0.273e-6■■■■■ 29.3
PMF1-204ENST00000466489 ABCA5Q8WWZ7 1642 aa16.71■□□□□ 0.27
PMF1-204ENST00000466489 TRIM41Q8WV44 630 aa16.71■□□□□ 0.27
PMF1-204ENST00000466489 GAPVD1Q14C86 1478 aa16.71■□□□□ 0.27
PMF1-204ENST00000466489 PBRM1Q86U86 1689 aa16.71■□□□□ 0.27
PMF1-204ENST00000466489 GRIN2BQ13224 1484 aa16.69■□□□□ 0.26
PMF1-204ENST00000466489 MAGI1Q96QZ7 1491 aaPredicted RBP16.65■□□□□ 0.26
PMF1-204ENST00000466489 KIF27Q86VH2 1401 aa16.64■□□□□ 0.25
PMF1-204ENST00000466489 SNAPC4Q5SXM2 1469 aa16.62■□□□□ 0.25
PMF1-204ENST00000466489 ERICH3Q5RHP9 1530 aa16.61■□□□□ 0.25
PMF1-204ENST00000466489 CHD1O14646 1710 aa16.59■□□□□ 0.25
PMF1-204ENST00000466489 SYNJ2O15056 1496 aa16.56■□□□□ 0.24
PMF1-204ENST00000466489 FBLN2P98095 1184 aa16.56■□□□□ 0.24
PMF1-204ENST00000466489 CHMP7Q8WUX9 453 aaPredicted RBP16.55■□□□□ 0.24
PMF1-204ENST00000466489 CUL7Q14999 1698 aa16.55■□□□□ 0.24
PMF1-204ENST00000466489 ADAMTS12P58397 1594 aa16.55■□□□□ 0.24
PMF1-204ENST00000466489 CHIC1Q5VXU3 224 aa16.53■□□□□ 0.24
PMF1-204ENST00000466489 OSCARQ8IYS5 282 aa16.53■□□□□ 0.24
PMF1-204ENST00000466489 FHAD1B1AJZ9 1412 aa16.52■□□□□ 0.23
PMF1-204ENST00000466489 EEA1Q15075 1411 aa16.46■□□□□ 0.23
PMF1-204ENST00000466489 IGF1RP08069 1367 aa16.46■□□□□ 0.23
PMF1-204ENST00000466489 GRIN2AQ12879 1464 aa16.46■□□□□ 0.23
PMF1-204ENST00000466489 CARMIL1Q5VZK9 1371 aa16.41■□□□□ 0.22
PMF1-204ENST00000466489 RUSC2Q8N2Y8 1516 aa16.4■□□□□ 0.22
PMF1-204ENST00000466489 RAPGEF2Q9Y4G8 1499 aa16.36■□□□□ 0.21
PMF1-204ENST00000466489 NUP160Q12769 1436 aa16.36■□□□□ 0.21
PMF1-204ENST00000466489 CLASP1Q7Z460 1538 aa16.35■□□□□ 0.21
PMF1-204ENST00000466489 CEP170Q5SW79 1584 aa16.34■□□□□ 0.21
PMF1-204ENST00000466489 CSRNP3Q8WYN3 585 aa16.34■□□□□ 0.21
PMF1-204ENST00000466489 FAM9AQ8IZU1 332 aaPredicted RBP16.3■□□□□ 0.2
PMF1-204ENST00000466489 PRXQ9BXM0 1461 aa16.29■□□□□ 0.2
PMF1-204ENST00000466489 CTTNBP2Q8WZ74 1663 aa16.27■□□□□ 0.2
PMF1-204ENST00000466489 KIAA0586Q9BVV6 1533 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms