RNA–Protein interactions for RNA: ENST00000466392.1

EDEM3-204, Transcript of ER degradation enhancing alpha-mannosidase like protein 3, humanhuman

TSL 5

Gene EDEM3, Length 491 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM3-204ENST00000466392 NISCHQ9Y2I1 1504 aa28.91■■■□□ 2.22
EDEM3-204ENST00000466392 CCDC180Q9P1Z9 1646 aa25.75■■□□□ 1.71
EDEM3-204ENST00000466392 ABCC9O60706 1549 aa25.32■■□□□ 1.64
EDEM3-204ENST00000466392 RB1CC1Q8TDY2 1594 aa24.25■■□□□ 1.47
EDEM3-204ENST00000466392 DCAF8L2P0C7V8 631 aa24.23■■□□□ 1.47
EDEM3-204ENST00000466392 NACADO15069 1562 aa24.17■■□□□ 1.46
EDEM3-204ENST00000466392 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
EDEM3-204ENST00000466392 MYO15BQ96JP2 1530 aa23.94■■□□□ 1.42
EDEM3-204ENST00000466392 UNC13AQ9UPW8 1703 aa23.86■■□□□ 1.41
EDEM3-204ENST00000466392 DCAF1Q9Y4B6 1507 aa23.84■■□□□ 1.41
EDEM3-204ENST00000466392 PABPN1Q86U42 306 aaKnown RBP eCLIP23.64■■□□□ 1.37
EDEM3-204ENST00000466392 BICRAQ9NZM4 1560 aa23.59■■□□□ 1.37
EDEM3-204ENST00000466392 SCRIBQ14160 1630 aa23.58■■□□□ 1.36
EDEM3-204ENST00000466392 DNAJC5BQ9UF47 199 aa23.31■■□□□ 1.32
EDEM3-204ENST00000466392 SHROOM4Q9ULL8 1493 aa23.17■■□□□ 1.3
EDEM3-204ENST00000466392 EIF4G1Q04637 1599 aaKnown RBP22.95■■□□□ 1.26
EDEM3-204ENST00000466392 CC2D2AQ9P2K1 1620 aa22.9■■□□□ 1.26
EDEM3-204ENST00000466392 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
EDEM3-204ENST00000466392 SMARCA4P51532 1647 aa22.49■■□□□ 1.19
EDEM3-204ENST00000466392 BAZ1AQ9NRL2 1556 aaPredicted RBP22.4■■□□□ 1.18
EDEM3-204ENST00000466392 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
EDEM3-204ENST00000466392 MROH2BQ7Z745 1585 aa22.33■■□□□ 1.17
EDEM3-204ENST00000466392 NCAPD3P42695 1498 aa22.29■■□□□ 1.16
EDEM3-204ENST00000466392 SMARCA2P51531 1590 aa22.29■■□□□ 1.16
EDEM3-204ENST00000466392 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
EDEM3-204ENST00000466392 HMGXB3Q12766 1538 aa22.21■■□□□ 1.15
EDEM3-204ENST00000466392 BAZ1BQ9UIG0 1483 aaKnown RBP22.16■■□□□ 1.14
EDEM3-204ENST00000466392 WIZO95785 1651 aa22.14■■□□□ 1.14
EDEM3-204ENST00000466392 RSF1Q96T23 1441 aaPredicted RBP21.99■■□□□ 1.11
EDEM3-204ENST00000466392 NESP48681 1621 aa21.92■■□□□ 1.1
EDEM3-204ENST00000466392 TOP2AP11388 1531 aaKnown RBP21.82■■□□□ 1.08
EDEM3-204ENST00000466392 ERCC6Q03468 1493 aa21.78■■□□□ 1.08
EDEM3-204ENST00000466392 LAMC3Q9Y6N6 1575 aa21.76■■□□□ 1.07
EDEM3-204ENST00000466392 KIF21AQ7Z4S6 1674 aa21.69■■□□□ 1.06
EDEM3-204ENST00000466392 CADPSQ9ULU8 1353 aa21.64■■□□□ 1.06
EDEM3-204ENST00000466392 THOC2Q8NI27 1593 aaKnown RBP21.59■■□□□ 1.05
EDEM3-204ENST00000466392 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
EDEM3-204ENST00000466392 PDS5BQ9NTI5 1447 aa21.56■■□□□ 1.04
EDEM3-204ENST00000466392 CUX2O14529 1486 aa21.52■■□□□ 1.04
EDEM3-204ENST00000466392 CFTRP13569 1480 aa21.52■■□□□ 1.03
EDEM3-204ENST00000466392 PRDM2Q13029 1718 aa21.46■■□□□ 1.03
EDEM3-204ENST00000466392 FANCD2Q9BXW9 1451 aa21.45■■□□□ 1.02
EDEM3-204ENST00000466392 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
EDEM3-204ENST00000466392 CEP164Q9UPV0 1460 aa21.42■■□□□ 1.02
EDEM3-204ENST00000466392 MRC2Q9UBG0 1479 aa21.4■■□□□ 1.02
EDEM3-204ENST00000466392 WDR62O43379 1518 aa21.34■■□□□ 1.01
EDEM3-204ENST00000466392 URB2Q14146 1524 aaKnown RBP21.27■■□□□ 1
EDEM3-204ENST00000466392 TOPBP1Q92547 1522 aa21.11■□□□□ 0.97
EDEM3-204ENST00000466392 DNMBPQ6XZF7 1577 aa21.07■□□□□ 0.96
EDEM3-204ENST00000466392 ABCC8Q09428 1581 aa21■□□□□ 0.95
EDEM3-204ENST00000466392 CUX1P39880 1505 aa20.95■□□□□ 0.94
EDEM3-204ENST00000466392 DNAJC5Q9H3Z4 198 aa20.95■□□□□ 0.94
EDEM3-204ENST00000466392 IFT140Q96RY7 1462 aa20.94■□□□□ 0.94
EDEM3-204ENST00000466392 ZNF608Q9ULD9 1512 aaPredicted RBP20.94■□□□□ 0.94
EDEM3-204ENST00000466392 POLA1P09884 1462 aaPredicted RBP20.93■□□□□ 0.94
EDEM3-204ENST00000466392 TARBP1Q13395 1621 aaKnown RBP20.91■□□□□ 0.94
EDEM3-204ENST00000466392 FGD5Q6ZNL6 1462 aa20.88■□□□□ 0.93
EDEM3-204ENST00000466392 EIF4G3O43432 1585 aaKnown RBP20.88■□□□□ 0.93
EDEM3-204ENST00000466392 RAD54L2Q9Y4B4 1467 aa20.88■□□□□ 0.93
EDEM3-204ENST00000466392 SOGA1O94964 1423 aa20.8■□□□□ 0.92
EDEM3-204ENST00000466392 AQRO60306 1485 aaKnown RBP eCLIP20.8■□□□□ 0.92
EDEM3-204ENST00000466392 SYNJ1O43426 1573 aa20.78■□□□□ 0.92
EDEM3-204ENST00000466392 WDR97A6NE52 1622 aa20.77■□□□□ 0.92
EDEM3-204ENST00000466392 BIVM-ERCC5R4GMW8 1640 aa20.75■□□□□ 0.91
EDEM3-204ENST00000466392 TDRD9Q8NDG6 1382 aaKnown RBP20.73■□□□□ 0.91
EDEM3-204ENST00000466392 WRNQ14191 1432 aaPredicted RBP eCLIP20.73■□□□□ 0.91
EDEM3-204ENST00000466392 TOP2BQ02880 1626 aa20.73■□□□□ 0.91
EDEM3-204ENST00000466392 CHD1O14646 1710 aa20.67■□□□□ 0.9
EDEM3-204ENST00000466392 PBRM1Q86U86 1689 aa20.64■□□□□ 0.9
EDEM3-204ENST00000466392 ABCA10Q8WWZ4 1543 aa20.62■□□□□ 0.89
EDEM3-204ENST00000466392 ABCA5Q8WWZ7 1642 aa20.61■□□□□ 0.89
EDEM3-204ENST00000466392 SNAPC4Q5SXM2 1469 aa20.61■□□□□ 0.89
EDEM3-204ENST00000466392 OSCARQ8IYS5 282 aa20.6■□□□□ 0.89
EDEM3-204ENST00000466392 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
EDEM3-204ENST00000466392 GRIN2BQ13224 1484 aa20.56■□□□□ 0.88
EDEM3-204ENST00000466392 FBLN2P98095 1184 aa20.55■□□□□ 0.88
EDEM3-204ENST00000466392 MAGI1Q96QZ7 1491 aaPredicted RBP20.5■□□□□ 0.87
EDEM3-204ENST00000466392 SYNJ2O15056 1496 aa20.44■□□□□ 0.86
EDEM3-204ENST00000466392 ADAMTS12P58397 1594 aa20.42■□□□□ 0.86
EDEM3-204ENST00000466392 CHMP7Q8WUX9 453 aaPredicted RBP20.42■□□□□ 0.86
EDEM3-204ENST00000466392 RIMBP3CA6NJZ7 1639 aa20.42■□□□□ 0.86
EDEM3-204ENST00000466392 RIMBP3BA6NNM3 1639 aa20.42■□□□□ 0.86
EDEM3-204ENST00000466392 RIMBP3Q9UFD9 1639 aa20.42■□□□□ 0.86
EDEM3-204ENST00000466392 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
EDEM3-204ENST00000466392 ARHGEF11O15085 1522 aa20.36■□□□□ 0.85
EDEM3-204ENST00000466392 CLASP1Q7Z460 1538 aa20.36■□□□□ 0.85
EDEM3-204ENST00000466392 GRIN2AQ12879 1464 aa20.33■□□□□ 0.85
EDEM3-204ENST00000466392 TRIM41Q8WV44 630 aa20.33■□□□□ 0.85
EDEM3-204ENST00000466392 FHAD1B1AJZ9 1412 aa20.3■□□□□ 0.84
EDEM3-204ENST00000466392 CEP170Q5SW79 1584 aa20.29■□□□□ 0.84
EDEM3-204ENST00000466392 KIF27Q86VH2 1401 aa20.27■□□□□ 0.84
EDEM3-204ENST00000466392 IGF1RP08069 1367 aa20.21■□□□□ 0.83
EDEM3-204ENST00000466392 NUP160Q12769 1436 aa20.21■□□□□ 0.83
EDEM3-204ENST00000466392 CUL7Q14999 1698 aa20.21■□□□□ 0.83
EDEM3-204ENST00000466392 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
EDEM3-204ENST00000466392 ARAP1Q96P48 1450 aa20.2■□□□□ 0.82
EDEM3-204ENST00000466392 ERCC6L2Q5T890 1561 aa20.16■□□□□ 0.82
EDEM3-204ENST00000466392 CYB5RLQ6IPT4 315 aa20.15■□□□□ 0.82
EDEM3-204ENST00000466392 SHROOM2Q13796 1616 aa20.13■□□□□ 0.81
EDEM3-204ENST00000466392 CARMIL1Q5VZK9 1371 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms