RNA–Protein interactions for RNA: ENST00000466205.5

CD40-204, Transcript of CD40 molecule, humanhuman

TSL 1 (best)

Gene CD40, Length 822 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-204ENST00000466205 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
CD40-204ENST00000466205 CCDC180Q9P1Z9 1646 aa22.07■■□□□ 1.12
CD40-204ENST00000466205 ABCC9O60706 1549 aa21.85■■□□□ 1.09
CD40-204ENST00000466205 DCAF8L2P0C7V8 631 aa20.96■□□□□ 0.95
CD40-204ENST00000466205 RB1CC1Q8TDY2 1594 aa20.86■□□□□ 0.93
CD40-204ENST00000466205 NACADO15069 1562 aa20.78■□□□□ 0.92
CD40-204ENST00000466205 ZCCHC6Q5VYS8 1495 aaKnown RBP20.67■□□□□ 0.9
CD40-204ENST00000466205 MYO15BQ96JP2 1530 aa20.54■□□□□ 0.88
CD40-204ENST00000466205 DCAF1Q9Y4B6 1507 aa20.45■□□□□ 0.86
CD40-204ENST00000466205 PABPN1Q86U42 306 aaKnown RBP eCLIP20.43■□□□□ 0.86
CD40-204ENST00000466205 UNC13AQ9UPW8 1703 aa20.43■□□□□ 0.86
CD40-204ENST00000466205 SCRIBQ14160 1630 aa20.28■□□□□ 0.84
CD40-204ENST00000466205 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
CD40-204ENST00000466205 DNAJC5BQ9UF47 199 aa20.13■□□□□ 0.81
CD40-204ENST00000466205 SHROOM4Q9ULL8 1493 aa19.9■□□□□ 0.78
CD40-204ENST00000466205 EIF4G1Q04637 1599 aaKnown RBP19.74■□□□□ 0.75
CD40-204ENST00000466205 CC2D2AQ9P2K1 1620 aa19.71■□□□□ 0.75
CD40-204ENST00000466205 CECR2Q9BXF3 1484 aa19.59■□□□□ 0.73
CD40-204ENST00000466205 SMARCA4P51532 1647 aa19.31■□□□□ 0.68
CD40-204ENST00000466205 BAZ1AQ9NRL2 1556 aaPredicted RBP19.24■□□□□ 0.67
CD40-204ENST00000466205 ATAD2BQ9ULI0 1458 aa19.22■□□□□ 0.67
CD40-204ENST00000466205 MROH2BQ7Z745 1585 aa19.19■□□□□ 0.66
CD40-204ENST00000466205 NCAPD3P42695 1498 aa19.18■□□□□ 0.66
CD40-204ENST00000466205 SMARCA2P51531 1590 aa19.16■□□□□ 0.66
CD40-204ENST00000466205 BAZ1BQ9UIG0 1483 aaKnown RBP19.08■□□□□ 0.64
CD40-204ENST00000466205 HMGXB3Q12766 1538 aa19.07■□□□□ 0.64
CD40-204ENST00000466205 PEG3Q9GZU2 1588 aa19.05■□□□□ 0.64
CD40-204ENST00000466205 WIZO95785 1651 aa19.01■□□□□ 0.63
CD40-204ENST00000466205 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
CD40-204ENST00000466205 NESP48681 1621 aa18.88■□□□□ 0.61
CD40-204ENST00000466205 ERCC6Q03468 1493 aa18.82■□□□□ 0.6
CD40-204ENST00000466205 TOP2AP11388 1531 aaKnown RBP18.74■□□□□ 0.59
CD40-204ENST00000466205 LAMC3Q9Y6N6 1575 aa18.7■□□□□ 0.58
CD40-204ENST00000466205 CADPSQ9ULU8 1353 aa18.65■□□□□ 0.58
CD40-204ENST00000466205 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
CD40-204ENST00000466205 PDS5BQ9NTI5 1447 aa18.59■□□□□ 0.57
CD40-204ENST00000466205 CUX2O14529 1486 aa18.56■□□□□ 0.56
CD40-204ENST00000466205 THOC2Q8NI27 1593 aaKnown RBP18.55■□□□□ 0.56
CD40-204ENST00000466205 CCDC88BA6NC98 1476 aa18.54■□□□□ 0.56
CD40-204ENST00000466205 CFTRP13569 1480 aa18.51■□□□□ 0.55
CD40-204ENST00000466205 SUPT5HO00267 1087 aaKnown RBP18.48■□□□□ 0.55
CD40-204ENST00000466205 FANCD2Q9BXW9 1451 aa18.47■□□□□ 0.55
CD40-204ENST00000466205 CEP164Q9UPV0 1460 aa18.46■□□□□ 0.54
CD40-204ENST00000466205 DNAJC5Q9H3Z4 198 aa18.45■□□□□ 0.54
CD40-204ENST00000466205 MRC2Q9UBG0 1479 aa18.44■□□□□ 0.54
CD40-204ENST00000466205 WDR62O43379 1518 aa18.36■□□□□ 0.53
CD40-204ENST00000466205 PRDM2Q13029 1718 aa18.35■□□□□ 0.53
CD40-204ENST00000466205 URB2Q14146 1524 aaKnown RBP18.3■□□□□ 0.52
CD40-204ENST00000466205 TOPBP1Q92547 1522 aa18.16■□□□□ 0.5
CD40-204ENST00000466205 DNMBPQ6XZF7 1577 aa18.11■□□□□ 0.49
CD40-204ENST00000466205 ABCC8Q09428 1581 aa18.07■□□□□ 0.48
CD40-204ENST00000466205 ZNF608Q9ULD9 1512 aaPredicted RBP18.04■□□□□ 0.48
CD40-204ENST00000466205 IFT140Q96RY7 1462 aa18.04■□□□□ 0.48
CD40-204ENST00000466205 CUX1P39880 1505 aa18■□□□□ 0.47
CD40-204ENST00000466205 POLA1P09884 1462 aaPredicted RBP18■□□□□ 0.47
CD40-204ENST00000466205 RAD54L2Q9Y4B4 1467 aa17.98■□□□□ 0.47
CD40-204ENST00000466205 FGD5Q6ZNL6 1462 aa17.96■□□□□ 0.47
CD40-204ENST00000466205 TARBP1Q13395 1621 aaKnown RBP17.95■□□□□ 0.46
CD40-204ENST00000466205 EIF4G3O43432 1585 aaKnown RBP17.95■□□□□ 0.46
CD40-204ENST00000466205 SOGA1O94964 1423 aa17.93■□□□□ 0.46
CD40-204ENST00000466205 AQRO60306 1485 aaKnown RBP eCLIP17.92■□□□□ 0.46
CD40-204ENST00000466205 TDRD9Q8NDG6 1382 aaKnown RBP17.88■□□□□ 0.45
CD40-204ENST00000466205 WRNQ14191 1432 aaPredicted RBP eCLIP17.84■□□□□ 0.45
CD40-204ENST00000466205 SYNJ1O43426 1573 aa17.83■□□□□ 0.45
CD40-204ENST00000466205 OSCARQ8IYS5 282 aa17.81■□□□□ 0.44
CD40-204ENST00000466205 WDR97A6NE52 1622 aa17.79■□□□□ 0.44
CD40-204ENST00000466205 BIVM-ERCC5R4GMW8 1640 aa17.79■□□□□ 0.44
CD40-204ENST00000466205 FBLN2P98095 1184 aa17.78■□□□□ 0.44
CD40-204ENST00000466205 TOP2BQ02880 1626 aa17.78■□□□□ 0.44
CD40-204ENST00000466205 SNAPC4Q5SXM2 1469 aa17.75■□□□□ 0.43
CD40-204ENST00000466205 CHD1O14646 1710 aa17.75■□□□□ 0.43
CD40-204ENST00000466205 ABCA10Q8WWZ4 1543 aa17.72■□□□□ 0.43
CD40-204ENST00000466205 GAPVD1Q14C86 1478 aa17.71■□□□□ 0.43
CD40-204ENST00000466205 PBRM1Q86U86 1689 aa17.71■□□□□ 0.42
CD40-204ENST00000466205 GRIN2BQ13224 1484 aa17.7■□□□□ 0.42
CD40-204ENST00000466205 ABCA5Q8WWZ7 1642 aa17.69■□□□□ 0.42
CD40-204ENST00000466205 CHMP7Q8WUX9 453 aaPredicted RBP17.65■□□□□ 0.42
CD40-204ENST00000466205 TRIM41Q8WV44 630 aa17.65■□□□□ 0.42
CD40-204ENST00000466205 MAGI1Q96QZ7 1491 aaPredicted RBP17.64■□□□□ 0.41
CD40-204ENST00000466205 SYNJ2O15056 1496 aa17.6■□□□□ 0.41
CD40-204ENST00000466205 RIMBP3CA6NJZ7 1639 aa17.58■□□□□ 0.4
CD40-204ENST00000466205 RIMBP3BA6NNM3 1639 aa17.58■□□□□ 0.4
CD40-204ENST00000466205 RIMBP3Q9UFD9 1639 aa17.58■□□□□ 0.4
CD40-204ENST00000466205 ARHGEF11O15085 1522 aa17.55■□□□□ 0.4
CD40-204ENST00000466205 ADAMTS12P58397 1594 aa17.54■□□□□ 0.4
CD40-204ENST00000466205 CLASP1Q7Z460 1538 aa17.51■□□□□ 0.39
CD40-204ENST00000466205 ERICH3Q5RHP9 1530 aa17.5■□□□□ 0.39
CD40-204ENST00000466205 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
CD40-204ENST00000466205 FHAD1B1AJZ9 1412 aa17.48■□□□□ 0.39
CD40-204ENST00000466205 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
CD40-204ENST00000466205 CEP170Q5SW79 1584 aa17.45■□□□□ 0.38
CD40-204ENST00000466205 CYB5RLQ6IPT4 315 aa17.44■□□□□ 0.38
CD40-204ENST00000466205 ARAP1Q96P48 1450 aa17.41■□□□□ 0.38
CD40-204ENST00000466205 IGF1RP08069 1367 aa17.4■□□□□ 0.38
CD40-204ENST00000466205 NUP160Q12769 1436 aa17.38■□□□□ 0.37
CD40-204ENST00000466205 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
CD40-204ENST00000466205 CUL7Q14999 1698 aa17.34■□□□□ 0.37
CD40-204ENST00000466205 ERCC6L2Q5T890 1561 aa17.34■□□□□ 0.37
CD40-204ENST00000466205 CARMIL1Q5VZK9 1371 aa17.3■□□□□ 0.36
CD40-204ENST00000466205 SHROOM2Q13796 1616 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms