RNA–Protein interactions for RNA: ENST00000465937.1

LIMK2-207, Transcript of LIM domain kinase 2, humanhuman

TSL 3

Gene LIMK2, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2-207ENST00000465937 NISCHQ9Y2I1 1504 aa32.71■■■□□ 2.83
LIMK2-207ENST00000465937 CCDC180Q9P1Z9 1646 aa29.09■■■□□ 2.25
LIMK2-207ENST00000465937 ABCC9O60706 1549 aa28.47■■■□□ 2.15
LIMK2-207ENST00000465937 NACADO15069 1562 aa27.39■■□□□ 1.97
LIMK2-207ENST00000465937 RB1CC1Q8TDY2 1594 aa27.39■■□□□ 1.97
LIMK2-207ENST00000465937 MYO15BQ96JP2 1530 aa27.29■■□□□ 1.96
LIMK2-207ENST00000465937 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
LIMK2-207ENST00000465937 DCAF8L2P0C7V8 631 aa27.17■■□□□ 1.94
LIMK2-207ENST00000465937 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
LIMK2-207ENST00000465937 UNC13AQ9UPW8 1703 aa26.79■■□□□ 1.88
LIMK2-207ENST00000465937 BICRAQ9NZM4 1560 aa26.64■■□□□ 1.86
LIMK2-207ENST00000465937 PABPN1Q86U42 306 aaKnown RBP eCLIP26.59■■□□□ 1.85
LIMK2-207ENST00000465937 SCRIBQ14160 1630 aa26.45■■□□□ 1.82
LIMK2-207ENST00000465937 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
LIMK2-207ENST00000465937 DNAJC5BQ9UF47 199 aa26.32■■□□□ 1.8
LIMK2-207ENST00000465937 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
LIMK2-207ENST00000465937 CC2D2AQ9P2K1 1620 aa25.79■■□□□ 1.72
LIMK2-207ENST00000465937 CECR2Q9BXF3 1484 aa25.62■■□□□ 1.69
LIMK2-207ENST00000465937 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
LIMK2-207ENST00000465937 BAZ1AQ9NRL2 1556 aaPredicted RBP25.32■■□□□ 1.64
LIMK2-207ENST00000465937 NCAPD3P42695 1498 aa25.31■■□□□ 1.64
LIMK2-207ENST00000465937 ATAD2BQ9ULI0 1458 aa25.28■■□□□ 1.64
LIMK2-207ENST00000465937 SMARCA2P51531 1590 aa25.21■■□□□ 1.63
LIMK2-207ENST00000465937 MROH2BQ7Z745 1585 aa25.19■■□□□ 1.62
LIMK2-207ENST00000465937 PEG3Q9GZU2 1588 aa25.19■■□□□ 1.62
LIMK2-207ENST00000465937 HMGXB3Q12766 1538 aa25.14■■□□□ 1.62
LIMK2-207ENST00000465937 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
LIMK2-207ENST00000465937 RSF1Q96T23 1441 aaPredicted RBP24.89■■□□□ 1.58
LIMK2-207ENST00000465937 WIZO95785 1651 aa24.88■■□□□ 1.57
LIMK2-207ENST00000465937 NESP48681 1621 aa24.64■■□□□ 1.54
LIMK2-207ENST00000465937 TOP2AP11388 1531 aaKnown RBP24.63■■□□□ 1.53
LIMK2-207ENST00000465937 LAMC3Q9Y6N6 1575 aa24.59■■□□□ 1.53
LIMK2-207ENST00000465937 CADPSQ9ULU8 1353 aa24.54■■□□□ 1.52
LIMK2-207ENST00000465937 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
LIMK2-207ENST00000465937 PDS5BQ9NTI5 1447 aa24.42■■□□□ 1.5
LIMK2-207ENST00000465937 CFTRP13569 1480 aa24.38■■□□□ 1.49
LIMK2-207ENST00000465937 CUX2O14529 1486 aa24.38■■□□□ 1.49
LIMK2-207ENST00000465937 CCDC88BA6NC98 1476 aa24.36■■□□□ 1.49
LIMK2-207ENST00000465937 KIF21AQ7Z4S6 1674 aa24.33■■□□□ 1.49
LIMK2-207ENST00000465937 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
LIMK2-207ENST00000465937 FANCD2Q9BXW9 1451 aa24.2■■□□□ 1.47
LIMK2-207ENST00000465937 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
LIMK2-207ENST00000465937 CEP164Q9UPV0 1460 aa24.17■■□□□ 1.46
LIMK2-207ENST00000465937 PRDM2Q13029 1718 aa24.13■■□□□ 1.45
LIMK2-207ENST00000465937 WDR62O43379 1518 aa24.13■■□□□ 1.45
LIMK2-207ENST00000465937 SUPT5HO00267 1087 aaKnown RBP24.05■■□□□ 1.44
LIMK2-207ENST00000465937 URB2Q14146 1524 aaKnown RBP24■■□□□ 1.43
LIMK2-207ENST00000465937 TOPBP1Q92547 1522 aa23.84■■□□□ 1.41
LIMK2-207ENST00000465937 ABCC8Q09428 1581 aa23.83■■□□□ 1.41
LIMK2-207ENST00000465937 DNMBPQ6XZF7 1577 aa23.78■■□□□ 1.4
LIMK2-207ENST00000465937 DNAJC5Q9H3Z4 198 aa23.75■■□□□ 1.39
LIMK2-207ENST00000465937 IFT140Q96RY7 1462 aa23.69■■□□□ 1.38
LIMK2-207ENST00000465937 CUX1P39880 1505 aa23.63■■□□□ 1.37
LIMK2-207ENST00000465937 POLA1P09884 1462 aaPredicted RBP23.62■■□□□ 1.37
LIMK2-207ENST00000465937 TARBP1Q13395 1621 aaKnown RBP23.6■■□□□ 1.37
LIMK2-207ENST00000465937 ZNF608Q9ULD9 1512 aaPredicted RBP23.59■■□□□ 1.37
LIMK2-207ENST00000465937 FGD5Q6ZNL6 1462 aa23.54■■□□□ 1.36
LIMK2-207ENST00000465937 SOGA1O94964 1423 aa23.51■■□□□ 1.35
LIMK2-207ENST00000465937 RAD54L2Q9Y4B4 1467 aa23.5■■□□□ 1.35
LIMK2-207ENST00000465937 EIF4G3O43432 1585 aaKnown RBP23.47■■□□□ 1.35
LIMK2-207ENST00000465937 AQRO60306 1485 aaKnown RBP eCLIP23.44■■□□□ 1.344e-13■■■■■ 65.6
LIMK2-207ENST00000465937 WRNQ14191 1432 aaPredicted RBP eCLIP23.42■■□□□ 1.34
LIMK2-207ENST00000465937 WDR97A6NE52 1622 aa23.41■■□□□ 1.34
LIMK2-207ENST00000465937 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
LIMK2-207ENST00000465937 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
LIMK2-207ENST00000465937 TDRD9Q8NDG6 1382 aaKnown RBP23.38■■□□□ 1.33
LIMK2-207ENST00000465937 SYNJ1O43426 1573 aa23.37■■□□□ 1.33
LIMK2-207ENST00000465937 ABCA10Q8WWZ4 1543 aa23.35■■□□□ 1.33
LIMK2-207ENST00000465937 OSCARQ8IYS5 282 aa23.33■■□□□ 1.33
LIMK2-207ENST00000465937 GRIN2BQ13224 1484 aa23.25■■□□□ 1.31
LIMK2-207ENST00000465937 ABCA5Q8WWZ7 1642 aa23.25■■□□□ 1.31
LIMK2-207ENST00000465937 GAPVD1Q14C86 1478 aa23.24■■□□□ 1.31
LIMK2-207ENST00000465937 MAGI1Q96QZ7 1491 aaPredicted RBP23.21■■□□□ 1.31
LIMK2-207ENST00000465937 SNAPC4Q5SXM2 1469 aa23.2■■□□□ 1.3
LIMK2-207ENST00000465937 CHD1O14646 1710 aa23.17■■□□□ 1.3
LIMK2-207ENST00000465937 PBRM1Q86U86 1689 aa23.16■■□□□ 1.3
LIMK2-207ENST00000465937 SYNJ2O15056 1496 aa23.11■■□□□ 1.29
LIMK2-207ENST00000465937 FBLN2P98095 1184 aa23.06■■□□□ 1.28
LIMK2-207ENST00000465937 CHMP7Q8WUX9 453 aaPredicted RBP23.06■■□□□ 1.28
LIMK2-207ENST00000465937 ERICH3Q5RHP9 1530 aa23.06■■□□□ 1.28
LIMK2-207ENST00000465937 CLASP1Q7Z460 1538 aa23■■□□□ 1.27
LIMK2-207ENST00000465937 ADAMTS12P58397 1594 aa23■■□□□ 1.27
LIMK2-207ENST00000465937 FHAD1B1AJZ9 1412 aa22.99■■□□□ 1.27
LIMK2-207ENST00000465937 RIMBP3CA6NJZ7 1639 aa22.95■■□□□ 1.26
LIMK2-207ENST00000465937 RIMBP3BA6NNM3 1639 aa22.95■■□□□ 1.26
LIMK2-207ENST00000465937 ARHGEF11O15085 1522 aa22.95■■□□□ 1.26
LIMK2-207ENST00000465937 GRIN2AQ12879 1464 aa22.95■■□□□ 1.26
LIMK2-207ENST00000465937 RIMBP3Q9UFD9 1639 aa22.95■■□□□ 1.26
LIMK2-207ENST00000465937 KIF27Q86VH2 1401 aa22.93■■□□□ 1.26
LIMK2-207ENST00000465937 IGF1RP08069 1367 aa22.91■■□□□ 1.26
LIMK2-207ENST00000465937 NUP160Q12769 1436 aa22.91■■□□□ 1.26
LIMK2-207ENST00000465937 CEP170Q5SW79 1584 aa22.84■■□□□ 1.25
LIMK2-207ENST00000465937 CUL7Q14999 1698 aa22.79■■□□□ 1.24
LIMK2-207ENST00000465937 ARAP1Q96P48 1450 aa22.78■■□□□ 1.24
LIMK2-207ENST00000465937 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
LIMK2-207ENST00000465937 CARMIL1Q5VZK9 1371 aa22.74■■□□□ 1.23
LIMK2-207ENST00000465937 SHROOM2Q13796 1616 aa22.73■■□□□ 1.23
LIMK2-207ENST00000465937 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
LIMK2-207ENST00000465937 CYB5RLQ6IPT4 315 aa22.7■■□□□ 1.22
LIMK2-207ENST00000465937 ERCC6L2Q5T890 1561 aa22.64■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms