RNA–Protein interactions for RNA: ENST00000465842.1

CHKB-204, Transcript of choline kinase beta, humanhuman

TSL 2

Gene CHKB, Length 428 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-204ENST00000465842 NISCHQ9Y2I1 1504 aa45.93■■■■■ 4.94
CHKB-204ENST00000465842 CCDC180Q9P1Z9 1646 aa40.89■■■■■ 4.14
CHKB-204ENST00000465842 ABCC9O60706 1549 aa40.21■■■■■ 4.03
CHKB-204ENST00000465842 RB1CC1Q8TDY2 1594 aa38.6■■■■□ 3.77
CHKB-204ENST00000465842 DCAF8L2P0C7V8 631 aa38.59■■■■□ 3.77
CHKB-204ENST00000465842 NACADO15069 1562 aa38.48■■■■□ 3.75
CHKB-204ENST00000465842 ZCCHC6Q5VYS8 1495 aaKnown RBP38.22■■■■□ 3.71
CHKB-204ENST00000465842 MYO15BQ96JP2 1530 aa38.15■■■■□ 3.7
CHKB-204ENST00000465842 DCAF1Q9Y4B6 1507 aa37.95■■■■□ 3.67
CHKB-204ENST00000465842 UNC13AQ9UPW8 1703 aa37.65■■■■□ 3.62
CHKB-204ENST00000465842 PABPN1Q86U42 306 aaKnown RBP eCLIP37.57■■■■□ 3.6
CHKB-204ENST00000465842 SCRIBQ14160 1630 aa37.37■■■■□ 3.57
CHKB-204ENST00000465842 BICRAQ9NZM4 1560 aa37.36■■■■□ 3.57
CHKB-204ENST00000465842 SHROOM4Q9ULL8 1493 aa36.97■■■■□ 3.51
CHKB-204ENST00000465842 DNAJC5BQ9UF47 199 aa36.95■■■■□ 3.51
CHKB-204ENST00000465842 EIF4G1Q04637 1599 aaKnown RBP36.44■■■■□ 3.42
CHKB-204ENST00000465842 CC2D2AQ9P2K1 1620 aa36.33■■■■□ 3.41
CHKB-204ENST00000465842 CECR2Q9BXF3 1484 aa36.13■■■■□ 3.37
CHKB-204ENST00000465842 SMARCA4P51532 1647 aa35.68■■■■□ 3.3
CHKB-204ENST00000465842 BAZ1AQ9NRL2 1556 aaPredicted RBP35.64■■■■□ 3.3
CHKB-204ENST00000465842 ATAD2BQ9ULI0 1458 aa35.51■■■■□ 3.28
CHKB-204ENST00000465842 SMARCA2P51531 1590 aa35.49■■■■□ 3.27
CHKB-204ENST00000465842 NCAPD3P42695 1498 aa35.48■■■■□ 3.27
CHKB-204ENST00000465842 MROH2BQ7Z745 1585 aa35.4■■■■□ 3.26
CHKB-204ENST00000465842 HMGXB3Q12766 1538 aa35.32■■■■□ 3.25
CHKB-204ENST00000465842 PEG3Q9GZU2 1588 aa35.27■■■■□ 3.24
CHKB-204ENST00000465842 BAZ1BQ9UIG0 1483 aaKnown RBP35.27■■■■□ 3.24
CHKB-204ENST00000465842 WIZO95785 1651 aa35.02■■■■□ 3.2
CHKB-204ENST00000465842 RSF1Q96T23 1441 aaPredicted RBP34.94■■■■□ 3.18
CHKB-204ENST00000465842 NESP48681 1621 aa34.73■■■■□ 3.15
CHKB-204ENST00000465842 ERCC6Q03468 1493 aa34.72■■■■□ 3.15
CHKB-204ENST00000465842 TOP2AP11388 1531 aaKnown RBP34.65■■■■□ 3.14
CHKB-204ENST00000465842 LAMC3Q9Y6N6 1575 aa34.61■■■■□ 3.13
CHKB-204ENST00000465842 CADPSQ9ULU8 1353 aa34.49■■■■□ 3.11
CHKB-204ENST00000465842 PDS5BQ9NTI5 1447 aa34.42■■■■□ 3.1
CHKB-204ENST00000465842 CUX2O14529 1486 aa34.33■■■■□ 3.09
CHKB-204ENST00000465842 KIF21AQ7Z4S6 1674 aa34.31■■■■□ 3.08
CHKB-204ENST00000465842 CCDC88BA6NC98 1476 aa34.23■■■■□ 3.07
CHKB-204ENST00000465842 CFTRP13569 1480 aa34.22■■■■□ 3.07
CHKB-204ENST00000465842 THOC2Q8NI27 1593 aaKnown RBP34.2■■■■□ 3.07
CHKB-204ENST00000465842 FANCD2Q9BXW9 1451 aa34.11■■■■□ 3.05
CHKB-204ENST00000465842 CEP164Q9UPV0 1460 aa34.1■■■■□ 3.05
CHKB-204ENST00000465842 MRC2Q9UBG0 1479 aa34.07■■■■□ 3.05
CHKB-204ENST00000465842 SUPT5HO00267 1087 aaKnown RBP34.07■■■■□ 3.04
CHKB-204ENST00000465842 PRDM2Q13029 1718 aa33.96■■■■□ 3.03
CHKB-204ENST00000465842 WDR62O43379 1518 aa33.93■■■■□ 3.02
CHKB-204ENST00000465842 URB2Q14146 1524 aaKnown RBP33.75■■■□□ 2.99
CHKB-204ENST00000465842 TOPBP1Q92547 1522 aa33.53■■■□□ 2.96
CHKB-204ENST00000465842 ABCC8Q09428 1581 aa33.53■■■□□ 2.96
CHKB-204ENST00000465842 DNMBPQ6XZF7 1577 aa33.49■■■□□ 2.95
CHKB-204ENST00000465842 DNAJC5Q9H3Z4 198 aa33.42■■■□□ 2.94
CHKB-204ENST00000465842 IFT140Q96RY7 1462 aa33.37■■■□□ 2.93
CHKB-204ENST00000465842 POLA1P09884 1462 aaPredicted RBP33.24■■■□□ 2.91
CHKB-204ENST00000465842 CUX1P39880 1505 aa33.22■■■□□ 2.91
CHKB-204ENST00000465842 ZNF608Q9ULD9 1512 aaPredicted RBP33.22■■■□□ 2.91
CHKB-204ENST00000465842 FGD5Q6ZNL6 1462 aa33.17■■■□□ 2.9
CHKB-204ENST00000465842 TARBP1Q13395 1621 aaKnown RBP33.14■■■□□ 2.9
CHKB-204ENST00000465842 SOGA1O94964 1423 aa33.13■■■□□ 2.89
CHKB-204ENST00000465842 RAD54L2Q9Y4B4 1467 aa33.12■■■□□ 2.89
CHKB-204ENST00000465842 EIF4G3O43432 1585 aaKnown RBP33.1■■■□□ 2.89
CHKB-204ENST00000465842 AQRO60306 1485 aaKnown RBP eCLIP33.03■■■□□ 2.883e-8■■■■■ 33.5
CHKB-204ENST00000465842 WRNQ14191 1432 aaPredicted RBP eCLIP32.99■■■□□ 2.87
CHKB-204ENST00000465842 TDRD9Q8NDG6 1382 aaKnown RBP32.96■■■□□ 2.87
CHKB-204ENST00000465842 OSCARQ8IYS5 282 aa32.91■■■□□ 2.86
CHKB-204ENST00000465842 TOP2BQ02880 1626 aa32.9■■■□□ 2.86
CHKB-204ENST00000465842 WDR97A6NE52 1622 aa32.89■■■□□ 2.86
CHKB-204ENST00000465842 SYNJ1O43426 1573 aa32.89■■■□□ 2.86
CHKB-204ENST00000465842 BIVM-ERCC5R4GMW8 1640 aa32.88■■■□□ 2.85
CHKB-204ENST00000465842 ABCA10Q8WWZ4 1543 aa32.8■■■□□ 2.84
CHKB-204ENST00000465842 GRIN2BQ13224 1484 aa32.76■■■□□ 2.84
CHKB-204ENST00000465842 FBLN2P98095 1184 aa32.76■■■□□ 2.83
CHKB-204ENST00000465842 SNAPC4Q5SXM2 1469 aa32.74■■■□□ 2.83
CHKB-204ENST00000465842 GAPVD1Q14C86 1478 aa32.74■■■□□ 2.83
CHKB-204ENST00000465842 CHD1O14646 1710 aa32.71■■■□□ 2.83
CHKB-204ENST00000465842 ABCA5Q8WWZ7 1642 aa32.68■■■□□ 2.82
CHKB-204ENST00000465842 MAGI1Q96QZ7 1491 aaPredicted RBP32.67■■■□□ 2.82
CHKB-204ENST00000465842 PBRM1Q86U86 1689 aa32.67■■■□□ 2.82
CHKB-204ENST00000465842 CHMP7Q8WUX9 453 aaPredicted RBP32.61■■■□□ 2.81
CHKB-204ENST00000465842 SYNJ2O15056 1496 aa32.55■■■□□ 2.8
CHKB-204ENST00000465842 ERICH3Q5RHP9 1530 aa32.41■■■□□ 2.78
CHKB-204ENST00000465842 ADAMTS12P58397 1594 aa32.41■■■□□ 2.78
CHKB-204ENST00000465842 TRIM41Q8WV44 630 aa32.4■■■□□ 2.78
CHKB-204ENST00000465842 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
CHKB-204ENST00000465842 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
CHKB-204ENST00000465842 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
CHKB-204ENST00000465842 ARHGEF11O15085 1522 aa32.36■■■□□ 2.77
CHKB-204ENST00000465842 FHAD1B1AJZ9 1412 aa32.35■■■□□ 2.77
CHKB-204ENST00000465842 KIF27Q86VH2 1401 aa32.33■■■□□ 2.77
CHKB-204ENST00000465842 GRIN2AQ12879 1464 aa32.32■■■□□ 2.76
CHKB-204ENST00000465842 CLASP1Q7Z460 1538 aa32.31■■■□□ 2.76
CHKB-204ENST00000465842 CEP170Q5SW79 1584 aa32.15■■■□□ 2.74
CHKB-204ENST00000465842 IGF1RP08069 1367 aa32.15■■■□□ 2.74
CHKB-204ENST00000465842 NUP160Q12769 1436 aa32.15■■■□□ 2.74
CHKB-204ENST00000465842 CUL7Q14999 1698 aa32.11■■■□□ 2.73
CHKB-204ENST00000465842 CYB5RLQ6IPT4 315 aa32.11■■■□□ 2.73
CHKB-204ENST00000465842 ARAP1Q96P48 1450 aa32.08■■■□□ 2.73
CHKB-204ENST00000465842 CARMIL1Q5VZK9 1371 aa32.01■■■□□ 2.71
CHKB-204ENST00000465842 RUSC2Q8N2Y8 1516 aa31.95■■■□□ 2.7
CHKB-204ENST00000465842 SHROOM2Q13796 1616 aa31.91■■■□□ 2.7
CHKB-204ENST00000465842 ERCC6L2Q5T890 1561 aa31.88■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms