RNA–Protein interactions for RNA: ENST00000465788.1

SRM-203, Transcript of spermidine synthase, humanhuman

TSL 5

Gene SRM, Length 402 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRM-203ENST00000465788 NISCHQ9Y2I1 1504 aa32.01■■■□□ 2.72
SRM-203ENST00000465788 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
SRM-203ENST00000465788 ABCC9O60706 1549 aa28.6■■■□□ 2.17
SRM-203ENST00000465788 RB1CC1Q8TDY2 1594 aa27.38■■□□□ 1.97
SRM-203ENST00000465788 NACADO15069 1562 aa27.21■■□□□ 1.95
SRM-203ENST00000465788 DCAF8L2P0C7V8 631 aa26.91■■□□□ 1.9
SRM-203ENST00000465788 MYO15BQ96JP2 1530 aa26.89■■□□□ 1.89
SRM-203ENST00000465788 DNAJC5BQ9UF47 199 aa26.69■■□□□ 1.86
SRM-203ENST00000465788 UNC13AQ9UPW8 1703 aa26.68■■□□□ 1.86
SRM-203ENST00000465788 PABPN1Q86U42 306 aaKnown RBP eCLIP26.58■■□□□ 1.85
SRM-203ENST00000465788 ZCCHC6Q5VYS8 1495 aaKnown RBP26.54■■□□□ 1.84
SRM-203ENST00000465788 DCAF1Q9Y4B6 1507 aa26.53■■□□□ 1.84
SRM-203ENST00000465788 BICRAQ9NZM4 1560 aa26.46■■□□□ 1.83
SRM-203ENST00000465788 SHROOM4Q9ULL8 1493 aa26.31■■□□□ 1.8
SRM-203ENST00000465788 SCRIBQ14160 1630 aa26.1■■□□□ 1.77
SRM-203ENST00000465788 CC2D2AQ9P2K1 1620 aa25.88■■□□□ 1.73
SRM-203ENST00000465788 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
SRM-203ENST00000465788 CECR2Q9BXF3 1484 aa25.81■■□□□ 1.72
SRM-203ENST00000465788 NCAPD3P42695 1498 aa25.08■■□□□ 1.6
SRM-203ENST00000465788 SMARCA2P51531 1590 aa24.98■■□□□ 1.59
SRM-203ENST00000465788 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
SRM-203ENST00000465788 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
SRM-203ENST00000465788 HMGXB3Q12766 1538 aa24.92■■□□□ 1.58
SRM-203ENST00000465788 BAZ1AQ9NRL2 1556 aaPredicted RBP24.89■■□□□ 1.58
SRM-203ENST00000465788 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
SRM-203ENST00000465788 PEG3Q9GZU2 1588 aa24.77■■□□□ 1.56
SRM-203ENST00000465788 CUX2O14529 1486 aa24.77■■□□□ 1.56
SRM-203ENST00000465788 BAZ1BQ9UIG0 1483 aaKnown RBP24.76■■□□□ 1.55
SRM-203ENST00000465788 DNAJC5Q9H3Z4 198 aa24.62■■□□□ 1.53
SRM-203ENST00000465788 MROH2BQ7Z745 1585 aa24.6■■□□□ 1.53
SRM-203ENST00000465788 NESP48681 1621 aa24.54■■□□□ 1.52
SRM-203ENST00000465788 LAMC3Q9Y6N6 1575 aa24.54■■□□□ 1.52
SRM-203ENST00000465788 PDS5BQ9NTI5 1447 aa24.4■■□□□ 1.5
SRM-203ENST00000465788 THOC2Q8NI27 1593 aaKnown RBP24.37■■□□□ 1.49
SRM-203ENST00000465788 WIZO95785 1651 aa24.31■■□□□ 1.48
SRM-203ENST00000465788 KIF21AQ7Z4S6 1674 aa24.3■■□□□ 1.48
SRM-203ENST00000465788 CADPSQ9ULU8 1353 aa24.3■■□□□ 1.48
SRM-203ENST00000465788 MRC2Q9UBG0 1479 aa24.14■■□□□ 1.46
SRM-203ENST00000465788 RSF1Q96T23 1441 aaPredicted RBP24.13■■□□□ 1.45
SRM-203ENST00000465788 TOP2AP11388 1531 aaKnown RBP24.09■■□□□ 1.45
SRM-203ENST00000465788 WDR62O43379 1518 aa24.08■■□□□ 1.45
SRM-203ENST00000465788 CEP164Q9UPV0 1460 aa24.07■■□□□ 1.44
SRM-203ENST00000465788 CFTRP13569 1480 aa24.03■■□□□ 1.44
SRM-203ENST00000465788 FANCD2Q9BXW9 1451 aa24.01■■□□□ 1.43
SRM-203ENST00000465788 PRDM2Q13029 1718 aa23.87■■□□□ 1.41
SRM-203ENST00000465788 URB2Q14146 1524 aaKnown RBP23.77■■□□□ 1.4
SRM-203ENST00000465788 CCDC88BA6NC98 1476 aa23.75■■□□□ 1.39
SRM-203ENST00000465788 ABCC8Q09428 1581 aa23.63■■□□□ 1.37
SRM-203ENST00000465788 OSCARQ8IYS5 282 aa23.6■■□□□ 1.37
SRM-203ENST00000465788 IFT140Q96RY7 1462 aa23.6■■□□□ 1.37
SRM-203ENST00000465788 TOPBP1Q92547 1522 aa23.55■■□□□ 1.36
SRM-203ENST00000465788 DNMBPQ6XZF7 1577 aa23.51■■□□□ 1.35
SRM-203ENST00000465788 TRIM41Q8WV44 630 aa23.5■■□□□ 1.35
SRM-203ENST00000465788 ZNF608Q9ULD9 1512 aaPredicted RBP23.43■■□□□ 1.34
SRM-203ENST00000465788 EIF4G3O43432 1585 aaKnown RBP23.38■■□□□ 1.33
SRM-203ENST00000465788 TARBP1Q13395 1621 aaKnown RBP23.34■■□□□ 1.33
SRM-203ENST00000465788 POLA1P09884 1462 aaPredicted RBP23.31■■□□□ 1.32
SRM-203ENST00000465788 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
SRM-203ENST00000465788 RIMBP3CA6NJZ7 1639 aa23.25■■□□□ 1.31
SRM-203ENST00000465788 RIMBP3BA6NNM3 1639 aa23.25■■□□□ 1.31
SRM-203ENST00000465788 RIMBP3Q9UFD9 1639 aa23.25■■□□□ 1.31
SRM-203ENST00000465788 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.317e-8■■■■■ 26.9
SRM-203ENST00000465788 SOGA1O94964 1423 aa23.22■■□□□ 1.31
SRM-203ENST00000465788 CHD1O14646 1710 aa23.19■■□□□ 1.3
SRM-203ENST00000465788 ARHGEF11O15085 1522 aa23.19■■□□□ 1.3
SRM-203ENST00000465788 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
SRM-203ENST00000465788 RAD54L2Q9Y4B4 1467 aa23.16■■□□□ 1.3
SRM-203ENST00000465788 CUX1P39880 1505 aa23.13■■□□□ 1.29
SRM-203ENST00000465788 TDRD9Q8NDG6 1382 aaKnown RBP23.11■■□□□ 1.29
SRM-203ENST00000465788 FBLN2P98095 1184 aa23.1■■□□□ 1.29
SRM-203ENST00000465788 MAGI1Q96QZ7 1491 aaPredicted RBP23.07■■□□□ 1.28
SRM-203ENST00000465788 GRIN2BQ13224 1484 aa23.05■■□□□ 1.28
SRM-203ENST00000465788 SNAPC4Q5SXM2 1469 aa23.05■■□□□ 1.28
SRM-203ENST00000465788 SUPT5HO00267 1087 aaKnown RBP23.03■■□□□ 1.28
SRM-203ENST00000465788 SYNJ1O43426 1573 aa22.99■■□□□ 1.27
SRM-203ENST00000465788 CHMP7Q8WUX9 453 aaPredicted RBP22.99■■□□□ 1.27
SRM-203ENST00000465788 CYB5RLQ6IPT4 315 aa22.97■■□□□ 1.27
SRM-203ENST00000465788 SYNJ2O15056 1496 aa22.96■■□□□ 1.27
SRM-203ENST00000465788 GAPVD1Q14C86 1478 aa22.95■■□□□ 1.26
SRM-203ENST00000465788 ABCA10Q8WWZ4 1543 aa22.95■■□□□ 1.26
SRM-203ENST00000465788 PBRM1Q86U86 1689 aa22.94■■□□□ 1.26
SRM-203ENST00000465788 CLASP1Q7Z460 1538 aa22.94■■□□□ 1.26
SRM-203ENST00000465788 ARAP1Q96P48 1450 aa22.93■■□□□ 1.26
SRM-203ENST00000465788 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
SRM-203ENST00000465788 WRNQ14191 1432 aaPredicted RBP eCLIP22.88■■□□□ 1.25
SRM-203ENST00000465788 BIVM-ERCC5R4GMW8 1640 aa22.84■■□□□ 1.25
SRM-203ENST00000465788 TOP2BQ02880 1626 aa22.83■■□□□ 1.25
SRM-203ENST00000465788 TRHP20396 242 aaPredicted RBP22.73■■□□□ 1.23
SRM-203ENST00000465788 GRIN2AQ12879 1464 aa22.73■■□□□ 1.23
SRM-203ENST00000465788 ADAMTS12P58397 1594 aa22.72■■□□□ 1.23
SRM-203ENST00000465788 ERICH3Q5RHP9 1530 aa22.69■■□□□ 1.22
SRM-203ENST00000465788 FHAD1B1AJZ9 1412 aa22.68■■□□□ 1.22
SRM-203ENST00000465788 NUP160Q12769 1436 aa22.65■■□□□ 1.22
SRM-203ENST00000465788 CEP170Q5SW79 1584 aa22.6■■□□□ 1.21
SRM-203ENST00000465788 SHROOM2Q13796 1616 aa22.56■■□□□ 1.2
SRM-203ENST00000465788 ERCC6L2Q5T890 1561 aa22.48■■□□□ 1.19
SRM-203ENST00000465788 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
SRM-203ENST00000465788 PRG4Q92954 1404 aaPredicted RBP22.4■■□□□ 1.18
SRM-203ENST00000465788 JPH4Q96JJ6 628 aa22.4■■□□□ 1.18
SRM-203ENST00000465788 RUSC2Q8N2Y8 1516 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms