RNA–Protein interactions for RNA: ENST00000465756.5

NPHP3-203, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 3,852 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-203ENST00000465756 NISCHQ9Y2I1 1504 aa25.39■■□□□ 1.66
NPHP3-203ENST00000465756 CCDC180Q9P1Z9 1646 aa22.66■■□□□ 1.22
NPHP3-203ENST00000465756 ABCC9O60706 1549 aa22.09■■□□□ 1.13
NPHP3-203ENST00000465756 DCAF8L2P0C7V8 631 aa21.47■■□□□ 1.03
NPHP3-203ENST00000465756 RB1CC1Q8TDY2 1594 aa21.42■■□□□ 1.02
NPHP3-203ENST00000465756 NACADO15069 1562 aa21.38■■□□□ 1.01
NPHP3-203ENST00000465756 MYO15BQ96JP2 1530 aa21.23■□□□□ 0.99
NPHP3-203ENST00000465756 ZCCHC6Q5VYS8 1495 aaKnown RBP21.13■□□□□ 0.97
NPHP3-203ENST00000465756 DCAF1Q9Y4B6 1507 aa21.1■□□□□ 0.97
NPHP3-203ENST00000465756 SHROOM4Q9ULL8 1493 aa20.66■□□□□ 0.9
NPHP3-203ENST00000465756 PABPN1Q86U42 306 aaKnown RBP eCLIP20.62■□□□□ 0.89
NPHP3-203ENST00000465756 SCRIBQ14160 1630 aa20.56■□□□□ 0.88
NPHP3-203ENST00000465756 UNC13AQ9UPW8 1703 aa20.49■□□□□ 0.87
NPHP3-203ENST00000465756 BICRAQ9NZM4 1560 aa20.39■□□□□ 0.85
NPHP3-203ENST00000465756 EIF4G1Q04637 1599 aaKnown RBP20.04■□□□□ 0.8
NPHP3-203ENST00000465756 DNAJC5BQ9UF47 199 aa19.97■□□□□ 0.79
NPHP3-203ENST00000465756 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
NPHP3-203ENST00000465756 CC2D2AQ9P2K1 1620 aa19.93■□□□□ 0.78
NPHP3-203ENST00000465756 BAZ1AQ9NRL2 1556 aaPredicted RBP19.81■□□□□ 0.76
NPHP3-203ENST00000465756 SMARCA2P51531 1590 aa19.76■□□□□ 0.75
NPHP3-203ENST00000465756 SMARCA4P51532 1647 aa19.69■□□□□ 0.74
NPHP3-203ENST00000465756 NCAPD3P42695 1498 aa19.64■□□□□ 0.74
NPHP3-203ENST00000465756 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
NPHP3-203ENST00000465756 BAZ1BQ9UIG0 1483 aaKnown RBP19.59■□□□□ 0.73
NPHP3-203ENST00000465756 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
NPHP3-203ENST00000465756 PEG3Q9GZU2 1588 aa19.47■□□□□ 0.71
NPHP3-203ENST00000465756 MROH2BQ7Z745 1585 aa19.45■□□□□ 0.7
NPHP3-203ENST00000465756 RSF1Q96T23 1441 aaPredicted RBP19.3■□□□□ 0.68
NPHP3-203ENST00000465756 ERCC6Q03468 1493 aa19.29■□□□□ 0.68
NPHP3-203ENST00000465756 WIZO95785 1651 aa19.21■□□□□ 0.67
NPHP3-203ENST00000465756 TOP2AP11388 1531 aaKnown RBP19.21■□□□□ 0.67
NPHP3-203ENST00000465756 PDS5BQ9NTI5 1447 aa19.2■□□□□ 0.66
NPHP3-203ENST00000465756 LAMC3Q9Y6N6 1575 aa19.18■□□□□ 0.66
NPHP3-203ENST00000465756 CADPSQ9ULU8 1353 aa19.13■□□□□ 0.65
NPHP3-203ENST00000465756 CUX2O14529 1486 aa19.02■□□□□ 0.64
NPHP3-203ENST00000465756 SUPT5HO00267 1087 aaKnown RBP19.01■□□□□ 0.63
NPHP3-203ENST00000465756 NESP48681 1621 aa18.96■□□□□ 0.63
NPHP3-203ENST00000465756 CEP164Q9UPV0 1460 aa18.94■□□□□ 0.62
NPHP3-203ENST00000465756 CFTRP13569 1480 aa18.92■□□□□ 0.62
NPHP3-203ENST00000465756 CCDC88BA6NC98 1476 aa18.89■□□□□ 0.61
NPHP3-203ENST00000465756 MRC2Q9UBG0 1479 aa18.88■□□□□ 0.61
NPHP3-203ENST00000465756 FANCD2Q9BXW9 1451 aa18.88■□□□□ 0.61
NPHP3-203ENST00000465756 ABCC8Q09428 1581 aa18.81■□□□□ 0.6
NPHP3-203ENST00000465756 KIF21AQ7Z4S6 1674 aa18.76■□□□□ 0.59
NPHP3-203ENST00000465756 PRDM2Q13029 1718 aa18.76■□□□□ 0.59
NPHP3-203ENST00000465756 THOC2Q8NI27 1593 aaKnown RBP18.71■□□□□ 0.59
NPHP3-203ENST00000465756 WDR62O43379 1518 aa18.69■□□□□ 0.58
NPHP3-203ENST00000465756 DNMBPQ6XZF7 1577 aa18.56■□□□□ 0.56
NPHP3-203ENST00000465756 IFT140Q96RY7 1462 aa18.56■□□□□ 0.56
NPHP3-203ENST00000465756 URB2Q14146 1524 aaKnown RBP18.52■□□□□ 0.56
NPHP3-203ENST00000465756 TOPBP1Q92547 1522 aa18.52■□□□□ 0.56
NPHP3-203ENST00000465756 SOGA1O94964 1423 aa18.4■□□□□ 0.54
NPHP3-203ENST00000465756 WRNQ14191 1432 aaPredicted RBP eCLIP18.38■□□□□ 0.53
NPHP3-203ENST00000465756 WDR97A6NE52 1622 aa18.36■□□□□ 0.53
NPHP3-203ENST00000465756 POLA1P09884 1462 aaPredicted RBP18.33■□□□□ 0.53
NPHP3-203ENST00000465756 FGD5Q6ZNL6 1462 aa18.33■□□□□ 0.52
NPHP3-203ENST00000465756 DNAJC5Q9H3Z4 198 aa18.33■□□□□ 0.52
NPHP3-203ENST00000465756 OSCARQ8IYS5 282 aa18.3■□□□□ 0.52
NPHP3-203ENST00000465756 CUX1P39880 1505 aa18.28■□□□□ 0.52
NPHP3-203ENST00000465756 GRIN2BQ13224 1484 aa18.22■□□□□ 0.51
NPHP3-203ENST00000465756 FBLN2P98095 1184 aa18.22■□□□□ 0.51
NPHP3-203ENST00000465756 TOP2BQ02880 1626 aa18.21■□□□□ 0.51
NPHP3-203ENST00000465756 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
NPHP3-203ENST00000465756 RAD54L2Q9Y4B4 1467 aa18.2■□□□□ 0.5
NPHP3-203ENST00000465756 TDRD9Q8NDG6 1382 aaKnown RBP18.19■□□□□ 0.5
NPHP3-203ENST00000465756 EIF4G3O43432 1585 aaKnown RBP18.19■□□□□ 0.5
NPHP3-203ENST00000465756 TARBP1Q13395 1621 aaKnown RBP18.18■□□□□ 0.5
NPHP3-203ENST00000465756 BIVM-ERCC5R4GMW8 1640 aa18.18■□□□□ 0.5
NPHP3-203ENST00000465756 ABCA10Q8WWZ4 1543 aa18.18■□□□□ 0.5
NPHP3-203ENST00000465756 ZNF608Q9ULD9 1512 aaPredicted RBP18.18■□□□□ 0.5
NPHP3-203ENST00000465756 MAGI1Q96QZ7 1491 aaPredicted RBP18.17■□□□□ 0.5
NPHP3-203ENST00000465756 GAPVD1Q14C86 1478 aa18.17■□□□□ 0.5
NPHP3-203ENST00000465756 AQRO60306 1485 aaKnown RBP eCLIP18.16■□□□□ 0.5
NPHP3-203ENST00000465756 KIF27Q86VH2 1401 aa18.11■□□□□ 0.49
NPHP3-203ENST00000465756 TRIM41Q8WV44 630 aa18.09■□□□□ 0.49
NPHP3-203ENST00000465756 SNAPC4Q5SXM2 1469 aa18.08■□□□□ 0.48
NPHP3-203ENST00000465756 SYNJ1O43426 1573 aa18.08■□□□□ 0.48
NPHP3-203ENST00000465756 SYNJ2O15056 1496 aa18.06■□□□□ 0.48
NPHP3-203ENST00000465756 FHAD1B1AJZ9 1412 aa18.02■□□□□ 0.47
NPHP3-203ENST00000465756 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.47
NPHP3-203ENST00000465756 ABCA5Q8WWZ7 1642 aa17.99■□□□□ 0.47
NPHP3-203ENST00000465756 PBRM1Q86U86 1689 aa17.99■□□□□ 0.47
NPHP3-203ENST00000465756 FAM9AQ8IZU1 332 aaPredicted RBP17.98■□□□□ 0.47
NPHP3-203ENST00000465756 CHD1O14646 1710 aa17.93■□□□□ 0.46
NPHP3-203ENST00000465756 ADAMTS12P58397 1594 aa17.89■□□□□ 0.46
NPHP3-203ENST00000465756 GRIN2AQ12879 1464 aa17.89■□□□□ 0.45
NPHP3-203ENST00000465756 CUL7Q14999 1698 aa17.89■□□□□ 0.45
NPHP3-203ENST00000465756 EEA1Q15075 1411 aa17.87■□□□□ 0.45
NPHP3-203ENST00000465756 CARMIL1Q5VZK9 1371 aa17.84■□□□□ 0.45
NPHP3-203ENST00000465756 IGF1RP08069 1367 aa17.8■□□□□ 0.44
NPHP3-203ENST00000465756 NUP160Q12769 1436 aa17.78■□□□□ 0.44
NPHP3-203ENST00000465756 ARHGEF11O15085 1522 aa17.78■□□□□ 0.44
NPHP3-203ENST00000465756 CLASP1Q7Z460 1538 aa17.75■□□□□ 0.43
NPHP3-203ENST00000465756 CARMIL2Q6F5E8 1435 aa17.74■□□□□ 0.43
NPHP3-203ENST00000465756 RAPGEF2Q9Y4G8 1499 aa17.74■□□□□ 0.43
NPHP3-203ENST00000465756 CYB5RLQ6IPT4 315 aa17.73■□□□□ 0.43
NPHP3-203ENST00000465756 NPM1P06748 294 aaKnown RBP eCLIP17.72■□□□□ 0.43
NPHP3-203ENST00000465756 RIMBP3CA6NJZ7 1639 aa17.72■□□□□ 0.43
NPHP3-203ENST00000465756 RIMBP3BA6NNM3 1639 aa17.72■□□□□ 0.43
NPHP3-203ENST00000465756 RIMBP3Q9UFD9 1639 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms