RNA–Protein interactions for RNA: ENST00000465560.5

PTCD3-206, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 747 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-206ENST00000465560 NISCHQ9Y2I1 1504 aa49.03■■■■■ 5.44
PTCD3-206ENST00000465560 CCDC180Q9P1Z9 1646 aa43.58■■■■■ 4.57
PTCD3-206ENST00000465560 ABCC9O60706 1549 aa42.26■■■■■ 4.36
PTCD3-206ENST00000465560 ZCCHC6Q5VYS8 1495 aaKnown RBP40.92■■■■■ 4.14
PTCD3-206ENST00000465560 NACADO15069 1562 aa40.85■■■■■ 4.13
PTCD3-206ENST00000465560 RB1CC1Q8TDY2 1594 aa40.83■■■■■ 4.13
PTCD3-206ENST00000465560 DCAF8L2P0C7V8 631 aa40.71■■■■■ 4.11
PTCD3-206ENST00000465560 MYO15BQ96JP2 1530 aa40.7■■■■■ 4.11
PTCD3-206ENST00000465560 DCAF1Q9Y4B6 1507 aa40.62■■■■■ 4.09
PTCD3-206ENST00000465560 UNC13AQ9UPW8 1703 aa40.01■■■■■ 4
PTCD3-206ENST00000465560 SCRIBQ14160 1630 aa39.71■■■■□ 3.95
PTCD3-206ENST00000465560 BICRAQ9NZM4 1560 aa39.59■■■■□ 3.93
PTCD3-206ENST00000465560 PABPN1Q86U42 306 aaKnown RBP eCLIP39.47■■■■□ 3.91
PTCD3-206ENST00000465560 SHROOM4Q9ULL8 1493 aa39.22■■■■□ 3.87
PTCD3-206ENST00000465560 EIF4G1Q04637 1599 aaKnown RBP38.52■■■■□ 3.76
PTCD3-206ENST00000465560 DNAJC5BQ9UF47 199 aa38.49■■■■□ 3.75
PTCD3-206ENST00000465560 CC2D2AQ9P2K1 1620 aa38.3■■■■□ 3.72
PTCD3-206ENST00000465560 CECR2Q9BXF3 1484 aa38.13■■■■□ 3.69
PTCD3-206ENST00000465560 SMARCA4P51532 1647 aa38.03■■■■□ 3.68
PTCD3-206ENST00000465560 BAZ1AQ9NRL2 1556 aaPredicted RBP38■■■■□ 3.67
PTCD3-206ENST00000465560 MROH2BQ7Z745 1585 aa37.78■■■■□ 3.64
PTCD3-206ENST00000465560 SMARCA2P51531 1590 aa37.71■■■■□ 3.63
PTCD3-206ENST00000465560 ATAD2BQ9ULI0 1458 aa37.71■■■■□ 3.63
PTCD3-206ENST00000465560 PEG3Q9GZU2 1588 aa37.67■■■■□ 3.62
PTCD3-206ENST00000465560 NCAPD3P42695 1498 aa37.64■■■■□ 3.62
PTCD3-206ENST00000465560 HMGXB3Q12766 1538 aa37.54■■■■□ 3.6
PTCD3-206ENST00000465560 WIZO95785 1651 aa37.43■■■■□ 3.58
PTCD3-206ENST00000465560 BAZ1BQ9UIG0 1483 aaKnown RBP37.41■■■■□ 3.58
PTCD3-206ENST00000465560 RSF1Q96T23 1441 aaPredicted RBP37.41■■■■□ 3.58
PTCD3-206ENST00000465560 TOP2AP11388 1531 aaKnown RBP37.04■■■■□ 3.52
PTCD3-206ENST00000465560 LAMC3Q9Y6N6 1575 aa36.66■■■■□ 3.46
PTCD3-206ENST00000465560 NESP48681 1621 aa36.66■■■■□ 3.46
PTCD3-206ENST00000465560 SUPT5HO00267 1087 aaKnown RBP36.57■■■■□ 3.44
PTCD3-206ENST00000465560 CCDC88BA6NC98 1476 aa36.55■■■■□ 3.44
PTCD3-206ENST00000465560 CADPSQ9ULU8 1353 aa36.53■■■■□ 3.44
PTCD3-206ENST00000465560 ERCC6Q03468 1493 aa36.41■■■■□ 3.42
PTCD3-206ENST00000465560 CFTRP13569 1480 aa36.4■■■■□ 3.42
PTCD3-206ENST00000465560 PDS5BQ9NTI5 1447 aa36.34■■■■□ 3.41
PTCD3-206ENST00000465560 KIF21AQ7Z4S6 1674 aa36.33■■■■□ 3.41
PTCD3-206ENST00000465560 PRDM2Q13029 1718 aa36.31■■■■□ 3.4
PTCD3-206ENST00000465560 FANCD2Q9BXW9 1451 aa36.14■■■■□ 3.38
PTCD3-206ENST00000465560 THOC2Q8NI27 1593 aaKnown RBP36.13■■■■□ 3.37
PTCD3-206ENST00000465560 CEP164Q9UPV0 1460 aa36.09■■■■□ 3.37
PTCD3-206ENST00000465560 MRC2Q9UBG0 1479 aa35.98■■■■□ 3.35
PTCD3-206ENST00000465560 CUX2O14529 1486 aa35.97■■■■□ 3.35
PTCD3-206ENST00000465560 WDR62O43379 1518 aa35.89■■■■□ 3.34
PTCD3-206ENST00000465560 URB2Q14146 1524 aaKnown RBP35.78■■■■□ 3.32
PTCD3-206ENST00000465560 ABCC8Q09428 1581 aa35.62■■■■□ 3.29
PTCD3-206ENST00000465560 DNMBPQ6XZF7 1577 aa35.62■■■■□ 3.29
PTCD3-206ENST00000465560 TOPBP1Q92547 1522 aa35.61■■■■□ 3.29
PTCD3-206ENST00000465560 CUX1P39880 1505 aa35.44■■■■□ 3.26
PTCD3-206ENST00000465560 POLA1P09884 1462 aaPredicted RBP35.32■■■■□ 3.24
PTCD3-206ENST00000465560 IFT140Q96RY7 1462 aa35.31■■■■□ 3.24
PTCD3-206ENST00000465560 WRNQ14191 1432 aaPredicted RBP eCLIP35.28■■■■□ 3.24
PTCD3-206ENST00000465560 FGD5Q6ZNL6 1462 aa35.27■■■■□ 3.24
PTCD3-206ENST00000465560 BIVM-ERCC5R4GMW8 1640 aa35.26■■■■□ 3.24
PTCD3-206ENST00000465560 TARBP1Q13395 1621 aaKnown RBP35.24■■■■□ 3.23
PTCD3-206ENST00000465560 SYNJ1O43426 1573 aa35.23■■■■□ 3.23
PTCD3-206ENST00000465560 TOP2BQ02880 1626 aa35.23■■■■□ 3.23
PTCD3-206ENST00000465560 SOGA1O94964 1423 aa35.14■■■■□ 3.22
PTCD3-206ENST00000465560 RAD54L2Q9Y4B4 1467 aa35.13■■■■□ 3.21
PTCD3-206ENST00000465560 ZNF608Q9ULD9 1512 aaPredicted RBP35.12■■■■□ 3.21
PTCD3-206ENST00000465560 WDR97A6NE52 1622 aa35.06■■■■□ 3.2
PTCD3-206ENST00000465560 EIF4G3O43432 1585 aaKnown RBP35.06■■■■□ 3.2
PTCD3-206ENST00000465560 ABCA10Q8WWZ4 1543 aa34.96■■■■□ 3.19
PTCD3-206ENST00000465560 AQRO60306 1485 aaKnown RBP eCLIP34.92■■■■□ 3.185e-8■■■■□ 20.9
PTCD3-206ENST00000465560 TDRD9Q8NDG6 1382 aaKnown RBP34.88■■■■□ 3.17
PTCD3-206ENST00000465560 ABCA5Q8WWZ7 1642 aa34.84■■■■□ 3.17
PTCD3-206ENST00000465560 PBRM1Q86U86 1689 aa34.79■■■■□ 3.16
PTCD3-206ENST00000465560 GAPVD1Q14C86 1478 aa34.77■■■■□ 3.16
PTCD3-206ENST00000465560 GRIN2BQ13224 1484 aa34.72■■■■□ 3.15
PTCD3-206ENST00000465560 SNAPC4Q5SXM2 1469 aa34.65■■■■□ 3.14
PTCD3-206ENST00000465560 MAGI1Q96QZ7 1491 aaPredicted RBP34.64■■■■□ 3.14
PTCD3-206ENST00000465560 CHD1O14646 1710 aa34.61■■■■□ 3.13
PTCD3-206ENST00000465560 ERICH3Q5RHP9 1530 aa34.55■■■■□ 3.12
PTCD3-206ENST00000465560 TRIM41Q8WV44 630 aa34.55■■■■□ 3.12
PTCD3-206ENST00000465560 KIF27Q86VH2 1401 aa34.51■■■■□ 3.12
PTCD3-206ENST00000465560 SYNJ2O15056 1496 aa34.48■■■■□ 3.11
PTCD3-206ENST00000465560 DNAJC5Q9H3Z4 198 aa34.48■■■■□ 3.11
PTCD3-206ENST00000465560 ADAMTS12P58397 1594 aa34.48■■■■□ 3.11
PTCD3-206ENST00000465560 OSCARQ8IYS5 282 aa34.44■■■■□ 3.1
PTCD3-206ENST00000465560 FBLN2P98095 1184 aa34.4■■■■□ 3.1
PTCD3-206ENST00000465560 CHMP7Q8WUX9 453 aaPredicted RBP34.37■■■■□ 3.09
PTCD3-206ENST00000465560 FHAD1B1AJZ9 1412 aa34.37■■■■□ 3.09
PTCD3-206ENST00000465560 CUL7Q14999 1698 aa34.34■■■■□ 3.09
PTCD3-206ENST00000465560 IGF1RP08069 1367 aa34.32■■■■□ 3.08
PTCD3-206ENST00000465560 CHIC1Q5VXU3 224 aa34.3■■■■□ 3.08
PTCD3-206ENST00000465560 GRIN2AQ12879 1464 aa34.29■■■■□ 3.08
PTCD3-206ENST00000465560 RUSC2Q8N2Y8 1516 aa34.27■■■■□ 3.08
PTCD3-206ENST00000465560 CLASP1Q7Z460 1538 aa34.19■■■■□ 3.06
PTCD3-206ENST00000465560 CEP170Q5SW79 1584 aa34.14■■■■□ 3.06
PTCD3-206ENST00000465560 NUP160Q12769 1436 aa34.13■■■■□ 3.05
PTCD3-206ENST00000465560 CARMIL1Q5VZK9 1371 aa34.12■■■■□ 3.05
PTCD3-206ENST00000465560 EEA1Q15075 1411 aa34.04■■■■□ 3.04
PTCD3-206ENST00000465560 RAPGEF2Q9Y4G8 1499 aa33.98■■■■□ 3.03
PTCD3-206ENST00000465560 RIMBP3CA6NJZ7 1639 aa33.97■■■■□ 3.03
PTCD3-206ENST00000465560 RIMBP3BA6NNM3 1639 aa33.97■■■■□ 3.03
PTCD3-206ENST00000465560 RIMBP3Q9UFD9 1639 aa33.97■■■■□ 3.03
PTCD3-206ENST00000465560 ARHGEF11O15085 1522 aa33.96■■■■□ 3.03
PTCD3-206ENST00000465560 PRXQ9BXM0 1461 aa33.93■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms