RNA–Protein interactions for RNA: ENST00000465556.1

TMCO3-205, Transcript of transmembrane and coiled-coil domains 3, humanhuman

TSL 3

Gene TMCO3, Length 314 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMCO3-205ENST00000465556 NISCHQ9Y2I1 1504 aa29.73■■■□□ 2.35
TMCO3-205ENST00000465556 CCDC180Q9P1Z9 1646 aa26.66■■□□□ 1.86
TMCO3-205ENST00000465556 ABCC9O60706 1549 aa26.1■■□□□ 1.77
TMCO3-205ENST00000465556 RB1CC1Q8TDY2 1594 aa25.1■■□□□ 1.61
TMCO3-205ENST00000465556 NACADO15069 1562 aa25.01■■□□□ 1.59
TMCO3-205ENST00000465556 MYO15BQ96JP2 1530 aa24.79■■□□□ 1.56
TMCO3-205ENST00000465556 ZCCHC6Q5VYS8 1495 aaKnown RBP24.77■■□□□ 1.56
TMCO3-205ENST00000465556 DCAF8L2P0C7V8 631 aa24.72■■□□□ 1.55
TMCO3-205ENST00000465556 UNC13AQ9UPW8 1703 aa24.68■■□□□ 1.54
TMCO3-205ENST00000465556 DCAF1Q9Y4B6 1507 aa24.62■■□□□ 1.53
TMCO3-205ENST00000465556 BICRAQ9NZM4 1560 aa24.36■■□□□ 1.49
TMCO3-205ENST00000465556 PABPN1Q86U42 306 aaKnown RBP eCLIP24.26■■□□□ 1.47
TMCO3-205ENST00000465556 SCRIBQ14160 1630 aa24.25■■□□□ 1.47
TMCO3-205ENST00000465556 SHROOM4Q9ULL8 1493 aa24.09■■□□□ 1.45
TMCO3-205ENST00000465556 DNAJC5BQ9UF47 199 aa24.02■■□□□ 1.44
TMCO3-205ENST00000465556 EIF4G1Q04637 1599 aaKnown RBP23.72■■□□□ 1.39
TMCO3-205ENST00000465556 CC2D2AQ9P2K1 1620 aa23.67■■□□□ 1.38
TMCO3-205ENST00000465556 CECR2Q9BXF3 1484 aa23.48■■□□□ 1.35
TMCO3-205ENST00000465556 SMARCA4P51532 1647 aa23.19■■□□□ 1.3
TMCO3-205ENST00000465556 BAZ1AQ9NRL2 1556 aaPredicted RBP23.09■■□□□ 1.29
TMCO3-205ENST00000465556 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
TMCO3-205ENST00000465556 ATAD2BQ9ULI0 1458 aa23.01■■□□□ 1.27
TMCO3-205ENST00000465556 NCAPD3P42695 1498 aa23■■□□□ 1.27
TMCO3-205ENST00000465556 HMGXB3Q12766 1538 aa22.98■■□□□ 1.27
TMCO3-205ENST00000465556 PEG3Q9GZU2 1588 aa22.95■■□□□ 1.26
TMCO3-205ENST00000465556 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
TMCO3-205ENST00000465556 BAZ1BQ9UIG0 1483 aaKnown RBP22.84■■□□□ 1.25
TMCO3-205ENST00000465556 WIZO95785 1651 aa22.71■■□□□ 1.23
TMCO3-205ENST00000465556 NESP48681 1621 aa22.55■■□□□ 1.2
TMCO3-205ENST00000465556 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
TMCO3-205ENST00000465556 LAMC3Q9Y6N6 1575 aa22.52■■□□□ 1.2
TMCO3-205ENST00000465556 ERCC6Q03468 1493 aa22.52■■□□□ 1.2
TMCO3-205ENST00000465556 TOP2AP11388 1531 aaKnown RBP22.45■■□□□ 1.18
TMCO3-205ENST00000465556 KIF21AQ7Z4S6 1674 aa22.41■■□□□ 1.18
TMCO3-205ENST00000465556 CUX2O14529 1486 aa22.38■■□□□ 1.17
TMCO3-205ENST00000465556 THOC2Q8NI27 1593 aaKnown RBP22.36■■□□□ 1.17
TMCO3-205ENST00000465556 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
TMCO3-205ENST00000465556 PDS5BQ9NTI5 1447 aa22.28■■□□□ 1.16
TMCO3-205ENST00000465556 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
TMCO3-205ENST00000465556 CFTRP13569 1480 aa22.17■■□□□ 1.14
TMCO3-205ENST00000465556 MRC2Q9UBG0 1479 aa22.12■■□□□ 1.13
TMCO3-205ENST00000465556 CEP164Q9UPV0 1460 aa22.11■■□□□ 1.13
TMCO3-205ENST00000465556 CCDC88BA6NC98 1476 aa22.1■■□□□ 1.13
TMCO3-205ENST00000465556 WDR62O43379 1518 aa22.1■■□□□ 1.13
TMCO3-205ENST00000465556 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
TMCO3-205ENST00000465556 URB2Q14146 1524 aaKnown RBP21.91■■□□□ 1.1
TMCO3-205ENST00000465556 DNAJC5Q9H3Z4 198 aa21.77■■□□□ 1.08
TMCO3-205ENST00000465556 DNMBPQ6XZF7 1577 aa21.75■■□□□ 1.07
TMCO3-205ENST00000465556 TOPBP1Q92547 1522 aa21.75■■□□□ 1.07
TMCO3-205ENST00000465556 SUPT5HO00267 1087 aaKnown RBP21.71■■□□□ 1.07
TMCO3-205ENST00000465556 ABCC8Q09428 1581 aa21.7■■□□□ 1.06
TMCO3-205ENST00000465556 IFT140Q96RY7 1462 aa21.63■■□□□ 1.05
TMCO3-205ENST00000465556 TARBP1Q13395 1621 aaKnown RBP21.58■■□□□ 1.04
TMCO3-205ENST00000465556 EIF4G3O43432 1585 aaKnown RBP21.57■■□□□ 1.04
TMCO3-205ENST00000465556 ZNF608Q9ULD9 1512 aaPredicted RBP21.55■■□□□ 1.04
TMCO3-205ENST00000465556 POLA1P09884 1462 aaPredicted RBP21.55■■□□□ 1.04
TMCO3-205ENST00000465556 CUX1P39880 1505 aa21.53■■□□□ 1.04
TMCO3-205ENST00000465556 FGD5Q6ZNL6 1462 aa21.47■■□□□ 1.03
TMCO3-205ENST00000465556 WDR97A6NE52 1622 aa21.44■■□□□ 1.02
TMCO3-205ENST00000465556 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
TMCO3-205ENST00000465556 CHD1O14646 1710 aa21.38■■□□□ 1.01
TMCO3-205ENST00000465556 SOGA1O94964 1423 aa21.38■■□□□ 1.01
TMCO3-205ENST00000465556 BIVM-ERCC5R4GMW8 1640 aa21.37■■□□□ 1.01
TMCO3-205ENST00000465556 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.01
TMCO3-205ENST00000465556 TOP2BQ02880 1626 aa21.33■■□□□ 1
TMCO3-205ENST00000465556 SYNJ1O43426 1573 aa21.31■■□□□ 1
TMCO3-205ENST00000465556 PBRM1Q86U86 1689 aa21.31■■□□□ 1
TMCO3-205ENST00000465556 ABCA5Q8WWZ7 1642 aa21.27■■□□□ 1
TMCO3-205ENST00000465556 WRNQ14191 1432 aaPredicted RBP eCLIP21.27■■□□□ 1
TMCO3-205ENST00000465556 TDRD9Q8NDG6 1382 aaKnown RBP21.26■□□□□ 0.99
TMCO3-205ENST00000465556 OSCARQ8IYS5 282 aa21.26■□□□□ 0.99
TMCO3-205ENST00000465556 ABCA10Q8WWZ4 1543 aa21.25■□□□□ 0.99
TMCO3-205ENST00000465556 SNAPC4Q5SXM2 1469 aa21.23■□□□□ 0.99
TMCO3-205ENST00000465556 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
TMCO3-205ENST00000465556 MAGI1Q96QZ7 1491 aaPredicted RBP21.2■□□□□ 0.98
TMCO3-205ENST00000465556 GAPVD1Q14C86 1478 aa21.18■□□□□ 0.98
TMCO3-205ENST00000465556 RIMBP3CA6NJZ7 1639 aa21.15■□□□□ 0.98
TMCO3-205ENST00000465556 RIMBP3BA6NNM3 1639 aa21.15■□□□□ 0.98
TMCO3-205ENST00000465556 RIMBP3Q9UFD9 1639 aa21.15■□□□□ 0.98
TMCO3-205ENST00000465556 SYNJ2O15056 1496 aa21.1■□□□□ 0.97
TMCO3-205ENST00000465556 ADAMTS12P58397 1594 aa21.08■□□□□ 0.97
TMCO3-205ENST00000465556 ARHGEF11O15085 1522 aa21.08■□□□□ 0.96
TMCO3-205ENST00000465556 FBLN2P98095 1184 aa21.07■□□□□ 0.96
TMCO3-205ENST00000465556 CLASP1Q7Z460 1538 aa21.07■□□□□ 0.96
TMCO3-205ENST00000465556 ERICH3Q5RHP9 1530 aa21.01■□□□□ 0.95
TMCO3-205ENST00000465556 CHMP7Q8WUX9 453 aaPredicted RBP20.99■□□□□ 0.95
TMCO3-205ENST00000465556 TRIM41Q8WV44 630 aa20.98■□□□□ 0.95
TMCO3-205ENST00000465556 GRIN2AQ12879 1464 aa20.95■□□□□ 0.94
TMCO3-205ENST00000465556 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
TMCO3-205ENST00000465556 CEP170Q5SW79 1584 aa20.9■□□□□ 0.94
TMCO3-205ENST00000465556 ARAP1Q96P48 1450 aa20.89■□□□□ 0.94
TMCO3-205ENST00000465556 CUL7Q14999 1698 aa20.86■□□□□ 0.93
TMCO3-205ENST00000465556 NUP160Q12769 1436 aa20.86■□□□□ 0.93
TMCO3-205ENST00000465556 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
TMCO3-205ENST00000465556 SHROOM2Q13796 1616 aa20.81■□□□□ 0.92
TMCO3-205ENST00000465556 RUSC2Q8N2Y8 1516 aa20.78■□□□□ 0.92
TMCO3-205ENST00000465556 ERCC6L2Q5T890 1561 aa20.74■□□□□ 0.91
TMCO3-205ENST00000465556 CYB5RLQ6IPT4 315 aa20.74■□□□□ 0.91
TMCO3-205ENST00000465556 IGF1RP08069 1367 aa20.71■□□□□ 0.91
TMCO3-205ENST00000465556 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms