RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
COL7A1-205ENST00000465238 CCDC180Q9P1Z9 1646 aa39.18■■■■□ 3.86
COL7A1-205ENST00000465238 ABCC9O60706 1549 aa39■■■■□ 3.83
COL7A1-205ENST00000465238 RB1CC1Q8TDY2 1594 aa37.23■■■■□ 3.55
COL7A1-205ENST00000465238 NACADO15069 1562 aa37.01■■■■□ 3.52
COL7A1-205ENST00000465238 DCAF8L2P0C7V8 631 aa36.78■■■■□ 3.48
COL7A1-205ENST00000465238 MYO15BQ96JP2 1530 aa36.57■■■■□ 3.44
COL7A1-205ENST00000465238 DNAJC5BQ9UF47 199 aa36.46■■■■□ 3.43
COL7A1-205ENST00000465238 UNC13AQ9UPW8 1703 aa36.37■■■■□ 3.41
COL7A1-205ENST00000465238 PABPN1Q86U42 306 aaKnown RBP eCLIP36.31■■■■□ 3.41e-6■■■■■ 35.6
COL7A1-205ENST00000465238 ZCCHC6Q5VYS8 1495 aaKnown RBP36.23■■■■□ 3.39
COL7A1-205ENST00000465238 DCAF1Q9Y4B6 1507 aa36.13■■■■□ 3.37
COL7A1-205ENST00000465238 BICRAQ9NZM4 1560 aa36.11■■■■□ 3.37
COL7A1-205ENST00000465238 SHROOM4Q9ULL8 1493 aa35.71■■■■□ 3.31
COL7A1-205ENST00000465238 SCRIBQ14160 1630 aa35.65■■■■□ 3.3
COL7A1-205ENST00000465238 CC2D2AQ9P2K1 1620 aa35.26■■■■□ 3.24
COL7A1-205ENST00000465238 EIF4G1Q04637 1599 aaKnown RBP35.23■■■■□ 3.23
COL7A1-205ENST00000465238 CECR2Q9BXF3 1484 aa35.15■■■■□ 3.22
COL7A1-205ENST00000465238 NCAPD3P42695 1498 aa34.15■■■■□ 3.06
COL7A1-205ENST00000465238 SMARCA4P51532 1647 aa34.05■■■■□ 3.04
COL7A1-205ENST00000465238 ATAD2BQ9ULI0 1458 aa34.05■■■■□ 3.04
COL7A1-205ENST00000465238 SMARCA2P51531 1590 aa33.99■■■■□ 3.03
COL7A1-205ENST00000465238 HMGXB3Q12766 1538 aa33.92■■■■□ 3.02
COL7A1-205ENST00000465238 BAZ1AQ9NRL2 1556 aaPredicted RBP33.92■■■■□ 3.02
COL7A1-205ENST00000465238 PEG3Q9GZU2 1588 aa33.75■■■□□ 2.99
COL7A1-205ENST00000465238 BAZ1BQ9UIG0 1483 aaKnown RBP33.74■■■□□ 2.99
COL7A1-205ENST00000465238 ERCC6Q03468 1493 aa33.69■■■□□ 2.98
COL7A1-205ENST00000465238 MROH2BQ7Z745 1585 aa33.64■■■□□ 2.98
COL7A1-205ENST00000465238 CUX2O14529 1486 aa33.62■■■□□ 2.97
COL7A1-205ENST00000465238 NESP48681 1621 aa33.53■■■□□ 2.96
COL7A1-205ENST00000465238 DNAJC5Q9H3Z4 198 aa33.44■■■□□ 2.94
COL7A1-205ENST00000465238 LAMC3Q9Y6N6 1575 aa33.38■■■□□ 2.93
COL7A1-205ENST00000465238 WIZO95785 1651 aa33.23■■■□□ 2.91
COL7A1-205ENST00000465238 THOC2Q8NI27 1593 aaKnown RBP33.2■■■□□ 2.91
COL7A1-205ENST00000465238 PDS5BQ9NTI5 1447 aa33.18■■■□□ 2.9
COL7A1-205ENST00000465238 KIF21AQ7Z4S6 1674 aa33.13■■■□□ 2.89
COL7A1-205ENST00000465238 CADPSQ9ULU8 1353 aa33.11■■■□□ 2.89
COL7A1-205ENST00000465238 RSF1Q96T23 1441 aaPredicted RBP32.99■■■□□ 2.87
COL7A1-205ENST00000465238 MRC2Q9UBG0 1479 aa32.87■■■□□ 2.85
COL7A1-205ENST00000465238 TOP2AP11388 1531 aaKnown RBP32.85■■■□□ 2.85
COL7A1-205ENST00000465238 WDR62O43379 1518 aa32.79■■■□□ 2.84
COL7A1-205ENST00000465238 CEP164Q9UPV0 1460 aa32.77■■■□□ 2.84
COL7A1-205ENST00000465238 CFTRP13569 1480 aa32.76■■■□□ 2.84
COL7A1-205ENST00000465238 FANCD2Q9BXW9 1451 aa32.73■■■□□ 2.83
COL7A1-205ENST00000465238 PRDM2Q13029 1718 aa32.48■■■□□ 2.79
COL7A1-205ENST00000465238 CCDC88BA6NC98 1476 aa32.46■■■□□ 2.79
COL7A1-205ENST00000465238 URB2Q14146 1524 aaKnown RBP32.44■■■□□ 2.78
COL7A1-205ENST00000465238 TOPBP1Q92547 1522 aa32.12■■■□□ 2.73
COL7A1-205ENST00000465238 ABCC8Q09428 1581 aa32.11■■■□□ 2.73
COL7A1-205ENST00000465238 IFT140Q96RY7 1462 aa32.11■■■□□ 2.73
COL7A1-205ENST00000465238 OSCARQ8IYS5 282 aa32.09■■■□□ 2.73
COL7A1-205ENST00000465238 DNMBPQ6XZF7 1577 aa32.03■■■□□ 2.72
COL7A1-205ENST00000465238 ZNF608Q9ULD9 1512 aaPredicted RBP32■■■□□ 2.71
COL7A1-205ENST00000465238 TRIM41Q8WV44 630 aa31.99■■■□□ 2.71
COL7A1-205ENST00000465238 EIF4G3O43432 1585 aaKnown RBP31.86■■■□□ 2.69
COL7A1-205ENST00000465238 TARBP1Q13395 1621 aaKnown RBP31.84■■■□□ 2.69
COL7A1-205ENST00000465238 POLA1P09884 1462 aaPredicted RBP31.8■■■□□ 2.68
COL7A1-205ENST00000465238 AQRO60306 1485 aaKnown RBP eCLIP31.74■■■□□ 2.67
COL7A1-205ENST00000465238 SUPT5HO00267 1087 aaKnown RBP31.72■■■□□ 2.67
COL7A1-205ENST00000465238 SOGA1O94964 1423 aa31.66■■■□□ 2.66
COL7A1-205ENST00000465238 RAD54L2Q9Y4B4 1467 aa31.65■■■□□ 2.66
COL7A1-205ENST00000465238 RIMBP3CA6NJZ7 1639 aa31.64■■■□□ 2.66
COL7A1-205ENST00000465238 RIMBP3BA6NNM3 1639 aa31.64■■■□□ 2.66
COL7A1-205ENST00000465238 RIMBP3Q9UFD9 1639 aa31.64■■■□□ 2.66
COL7A1-205ENST00000465238 FGD5Q6ZNL6 1462 aa31.61■■■□□ 2.65
COL7A1-205ENST00000465238 CHD1O14646 1710 aa31.61■■■□□ 2.65
COL7A1-205ENST00000465238 CUX1P39880 1505 aa31.59■■■□□ 2.65
COL7A1-205ENST00000465238 WDR97A6NE52 1622 aa31.57■■■□□ 2.64
COL7A1-205ENST00000465238 TDRD9Q8NDG6 1382 aaKnown RBP31.56■■■□□ 2.64
COL7A1-205ENST00000465238 ARHGEF11O15085 1522 aa31.56■■■□□ 2.64
COL7A1-205ENST00000465238 FBLN2P98095 1184 aa31.51■■■□□ 2.63
COL7A1-205ENST00000465238 SNAPC4Q5SXM2 1469 aa31.43■■■□□ 2.62
COL7A1-205ENST00000465238 GRIN2BQ13224 1484 aa31.39■■■□□ 2.62
COL7A1-205ENST00000465238 MAGI1Q96QZ7 1491 aaPredicted RBP31.39■■■□□ 2.62
COL7A1-205ENST00000465238 CHMP7Q8WUX9 453 aaPredicted RBP31.32■■■□□ 2.6
COL7A1-205ENST00000465238 CYB5RLQ6IPT4 315 aa31.31■■■□□ 2.6
COL7A1-205ENST00000465238 GAPVD1Q14C86 1478 aa31.28■■■□□ 2.6
COL7A1-205ENST00000465238 ABCA10Q8WWZ4 1543 aa31.28■■■□□ 2.6
COL7A1-205ENST00000465238 SYNJ2O15056 1496 aa31.27■■■□□ 2.6
COL7A1-205ENST00000465238 PBRM1Q86U86 1689 aa31.27■■■□□ 2.6
COL7A1-205ENST00000465238 SYNJ1O43426 1573 aa31.26■■■□□ 2.6
COL7A1-205ENST00000465238 CLASP1Q7Z460 1538 aa31.25■■■□□ 2.59
COL7A1-205ENST00000465238 ARAP1Q96P48 1450 aa31.25■■■□□ 2.59
COL7A1-205ENST00000465238 ABCA5Q8WWZ7 1642 aa31.22■■■□□ 2.59
COL7A1-205ENST00000465238 WRNQ14191 1432 aaPredicted RBP eCLIP31.18■■■□□ 2.58
COL7A1-205ENST00000465238 BIVM-ERCC5R4GMW8 1640 aa31.16■■■□□ 2.58
COL7A1-205ENST00000465238 TOP2BQ02880 1626 aa31.15■■■□□ 2.58
COL7A1-205ENST00000465238 GRIN2AQ12879 1464 aa30.98■■■□□ 2.55
COL7A1-205ENST00000465238 ADAMTS12P58397 1594 aa30.97■■■□□ 2.55
COL7A1-205ENST00000465238 TRHP20396 242 aaPredicted RBP30.93■■■□□ 2.54
COL7A1-205ENST00000465238 FHAD1B1AJZ9 1412 aa30.9■■■□□ 2.54
COL7A1-205ENST00000465238 ERICH3Q5RHP9 1530 aa30.9■■■□□ 2.54
COL7A1-205ENST00000465238 NUP160Q12769 1436 aa30.87■■■□□ 2.53
COL7A1-205ENST00000465238 CEP170Q5SW79 1584 aa30.84■■■□□ 2.53
COL7A1-205ENST00000465238 ERCC6L2Q5T890 1561 aa30.74■■■□□ 2.51
COL7A1-205ENST00000465238 SHROOM2Q13796 1616 aa30.73■■■□□ 2.51
COL7A1-205ENST00000465238 KIF27Q86VH2 1401 aa30.56■■■□□ 2.48
COL7A1-205ENST00000465238 PRG4Q92954 1404 aaPredicted RBP30.56■■■□□ 2.48
COL7A1-205ENST00000465238 JPH4Q96JJ6 628 aa30.55■■■□□ 2.48
COL7A1-205ENST00000465238 RUSC2Q8N2Y8 1516 aa30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms