RNA–Protein interactions for RNA: ENST00000464867.1

APP-213, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best)

Gene APP, Length 816 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-213ENST00000464867 AEBP2Q6ZN18 517 aaPredicted RBP30.82■■■□□ 2.52
APP-213ENST00000464867 CHIC1Q5VXU3 224 aa29.43■■■□□ 2.3
APP-213ENST00000464867 SENP3Q9H4L4 574 aaPredicted RBP26.13■■□□□ 1.77
APP-213ENST00000464867 PHF23Q9BUL5 403 aaPredicted RBP25.89■■□□□ 1.74
APP-213ENST00000464867 FOXD1Q16676 465 aa24.4■■□□□ 1.5
APP-213ENST00000464867 NISCHQ9Y2I1 1504 aa24.2■■□□□ 1.46
APP-213ENST00000464867 PLPPR3Q6T4P5 718 aa23.59■■□□□ 1.37
APP-213ENST00000464867 PPP6R1Q9UPN7 881 aa23.06■■□□□ 1.28
APP-213ENST00000464867 ADRA2BP18089 450 aa22.97■■□□□ 1.27
APP-213ENST00000464867 PIAS4Q8N2W9 510 aaPredicted RBP22.82■■□□□ 1.24
APP-213ENST00000464867 ABCC9O60706 1549 aa22.81■■□□□ 1.24
APP-213ENST00000464867 MSH5O43196 834 aa22.64■■□□□ 1.21
APP-213ENST00000464867 CCDC180Q9P1Z9 1646 aa22.08■■□□□ 1.13
APP-213ENST00000464867 DNAJC5BQ9UF47 199 aa22.01■■□□□ 1.11
APP-213ENST00000464867 POTEDQ86YR6 584 aa21.76■■□□□ 1.07
APP-213ENST00000464867 RB1CC1Q8TDY2 1594 aa21.41■■□□□ 1.02
APP-213ENST00000464867 PABPN1Q86U42 306 aaKnown RBP eCLIP21.13■□□□□ 0.97
APP-213ENST00000464867 NACADO15069 1562 aa21.07■□□□□ 0.96
APP-213ENST00000464867 MAPK8IP2Q13387 824 aaPredicted RBP21.05■□□□□ 0.96
APP-213ENST00000464867 DCAF8L2P0C7V8 631 aa20.91■□□□□ 0.94
APP-213ENST00000464867 SCAF1Q9H7N4 1312 aaKnown RBP20.88■□□□□ 0.93
APP-213ENST00000464867 UNC13AQ9UPW8 1703 aa20.87■□□□□ 0.93
APP-213ENST00000464867 DNAJC5Q9H3Z4 198 aa20.86■□□□□ 0.93
APP-213ENST00000464867 DMRT2Q9Y5R5 561 aa20.8■□□□□ 0.92
APP-213ENST00000464867 PPP4R3CPQ6ZMV5 832 aa20.74■□□□□ 0.91
APP-213ENST00000464867 BICRAQ9NZM4 1560 aa20.71■□□□□ 0.91
APP-213ENST00000464867 CECR2Q9BXF3 1484 aa20.64■□□□□ 0.89
APP-213ENST00000464867 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
APP-213ENST00000464867 MYO15BQ96JP2 1530 aa20.49■□□□□ 0.87
APP-213ENST00000464867 SHROOM4Q9ULL8 1493 aa20.43■□□□□ 0.86
APP-213ENST00000464867 EIF4G1Q04637 1599 aaKnown RBP20.32■□□□□ 0.84
APP-213ENST00000464867 CNKSR2Q8WXI2 1034 aa20.26■□□□□ 0.83
APP-213ENST00000464867 HOXD11P31277 338 aaPredicted RBP20.13■□□□□ 0.81
APP-213ENST00000464867 SCRIBQ14160 1630 aa20.05■□□□□ 0.8
APP-213ENST00000464867 RNF216Q9NWF9 866 aaPredicted RBP20.02■□□□□ 0.8
APP-213ENST00000464867 CUX2O14529 1486 aa19.99■□□□□ 0.79
APP-213ENST00000464867 DCAF1Q9Y4B6 1507 aa19.94■□□□□ 0.78
APP-213ENST00000464867 NCBP3Q53F19 620 aaKnown RBP19.94■□□□□ 0.78
APP-213ENST00000464867 DCAF8L1A6NGE4 600 aa19.91■□□□□ 0.78
APP-213ENST00000464867 ZCCHC6Q5VYS8 1495 aaKnown RBP19.86■□□□□ 0.77
APP-213ENST00000464867 ERCC6Q03468 1493 aa19.82■□□□□ 0.76
APP-213ENST00000464867 NPM3O75607 178 aaKnown RBP19.76■□□□□ 0.75
APP-213ENST00000464867 TRIM41Q8WV44 630 aa19.68■□□□□ 0.74
APP-213ENST00000464867 KCNA4P22459 653 aa19.62■□□□□ 0.73
APP-213ENST00000464867 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
APP-213ENST00000464867 RNF39Q9H2S5 420 aa19.41■□□□□ 0.7
APP-213ENST00000464867 NESP48681 1621 aa19.33■□□□□ 0.69
APP-213ENST00000464867 CACNB1Q02641 598 aaPredicted RBP19.3■□□□□ 0.68
APP-213ENST00000464867 THOC2Q8NI27 1593 aaKnown RBP19.28■□□□□ 0.68
APP-213ENST00000464867 ATAD2BQ9ULI0 1458 aa19.25■□□□□ 0.67
APP-213ENST00000464867 HMGXB3Q12766 1538 aa19.21■□□□□ 0.67
APP-213ENST00000464867 SMARCA2P51531 1590 aa19.21■□□□□ 0.67
APP-213ENST00000464867 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.15■□□□□ 0.666e-6■□□□□ 8.2
APP-213ENST00000464867 LAMC3Q9Y6N6 1575 aa19.15■□□□□ 0.66
APP-213ENST00000464867 KIF21AQ7Z4S6 1674 aa19.1■□□□□ 0.65
APP-213ENST00000464867 PDS5BQ9NTI5 1447 aa19.09■□□□□ 0.65
APP-213ENST00000464867 C1QBPQ07021 282 aaKnown RBP19.09■□□□□ 0.65
APP-213ENST00000464867 BAZ1BQ9UIG0 1483 aaKnown RBP19.07■□□□□ 0.64
APP-213ENST00000464867 SMARCA4P51532 1647 aa19.04■□□□□ 0.64
APP-213ENST00000464867 OSCARQ8IYS5 282 aa19.02■□□□□ 0.64
APP-213ENST00000464867 BAZ1AQ9NRL2 1556 aaPredicted RBP19■□□□□ 0.63
APP-213ENST00000464867 MRC2Q9UBG0 1479 aa18.93■□□□□ 0.62
APP-213ENST00000464867 WDR62O43379 1518 aa18.88■□□□□ 0.61
APP-213ENST00000464867 PEG3Q9GZU2 1588 aa18.85■□□□□ 0.61
APP-213ENST00000464867 SLC4A2P04920 1241 aa18.83■□□□□ 0.6
APP-213ENST00000464867 U3KPZ7 1027 aaPredicted RBP18.83■□□□□ 0.6
APP-213ENST00000464867 CADPSQ9ULU8 1353 aa18.82■□□□□ 0.6
APP-213ENST00000464867 RIMBP3CA6NJZ7 1639 aa18.78■□□□□ 0.6
APP-213ENST00000464867 RIMBP3BA6NNM3 1639 aa18.78■□□□□ 0.6
APP-213ENST00000464867 RIMBP3Q9UFD9 1639 aa18.78■□□□□ 0.6
APP-213ENST00000464867 CEP164Q9UPV0 1460 aa18.71■□□□□ 0.59
APP-213ENST00000464867 TRHP20396 242 aaPredicted RBP18.71■□□□□ 0.59
APP-213ENST00000464867 ARHGEF11O15085 1522 aa18.63■□□□□ 0.57
APP-213ENST00000464867 CYB5RLQ6IPT4 315 aa18.62■□□□□ 0.57
APP-213ENST00000464867 MROH2BQ7Z745 1585 aa18.61■□□□□ 0.57
APP-213ENST00000464867 FANCD2Q9BXW9 1451 aa18.61■□□□□ 0.57
APP-213ENST00000464867 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
APP-213ENST00000464867 SPINK5Q9NQ38 1064 aaPredicted RBP18.51■□□□□ 0.55
APP-213ENST00000464867 URB2Q14146 1524 aaKnown RBP18.46■□□□□ 0.55
APP-213ENST00000464867 CFTRP13569 1480 aa18.42■□□□□ 0.54
APP-213ENST00000464867 CAPN15O75808 1086 aa18.39■□□□□ 0.53
APP-213ENST00000464867 WIZO95785 1651 aa18.38■□□□□ 0.53
APP-213ENST00000464867 IFT140Q96RY7 1462 aa18.37■□□□□ 0.53
APP-213ENST00000464867 ARAP1Q96P48 1450 aa18.36■□□□□ 0.53
APP-213ENST00000464867 ZNF608Q9ULD9 1512 aaPredicted RBP18.36■□□□□ 0.53
APP-213ENST00000464867 RSF1Q96T23 1441 aaPredicted RBP18.3■□□□□ 0.52
APP-213ENST00000464867 FBLN2P98095 1184 aa18.28■□□□□ 0.52
APP-213ENST00000464867 CHD1O14646 1710 aa18.27■□□□□ 0.52
APP-213ENST00000464867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.26■□□□□ 0.51
APP-213ENST00000464867 DSG3P32926 999 aa18.26■□□□□ 0.51
APP-213ENST00000464867 HNRNPUL2Q1KMD3 747 aaKnown RBP18.26■□□□□ 0.51
APP-213ENST00000464867 EIF4G3O43432 1585 aaKnown RBP18.25■□□□□ 0.51
APP-213ENST00000464867 PRDM2Q13029 1718 aa18.22■□□□□ 0.51
APP-213ENST00000464867 MYCNP04198 464 aaPredicted RBP18.21■□□□□ 0.51
APP-213ENST00000464867 SAMD1Q6SPF0 538 aaPredicted RBP18.2■□□□□ 0.5
APP-213ENST00000464867 APLP2Q06481 763 aa18.17■□□□□ 0.5
APP-213ENST00000464867 FOXD4L1Q9NU39 408 aa18.17■□□□□ 0.5
APP-213ENST00000464867 TOPBP1Q92547 1522 aa18.15■□□□□ 0.5
APP-213ENST00000464867 ABCC8Q09428 1581 aa18.14■□□□□ 0.49
APP-213ENST00000464867 AQRO60306 1485 aaKnown RBP eCLIP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms