RNA–Protein interactions for RNA: ENST00000464646.1

RPP40-203, Transcript of ribonuclease P/MRP subunit p40, humanhuman

TSL 5 BASIC

Gene RPP40, Length 1,042 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP40-203ENST00000464646 NISCHQ9Y2I1 1504 aa34.06■■■■□ 3.04
RPP40-203ENST00000464646 ABCC9O60706 1549 aa30.53■■■□□ 2.48
RPP40-203ENST00000464646 CCDC180Q9P1Z9 1646 aa30.49■■■□□ 2.47
RPP40-203ENST00000464646 DCAF8L2P0C7V8 631 aa29.06■■■□□ 2.24
RPP40-203ENST00000464646 RB1CC1Q8TDY2 1594 aa29.03■■■□□ 2.24
RPP40-203ENST00000464646 NACADO15069 1562 aa28.81■■■□□ 2.2
RPP40-203ENST00000464646 PABPN1Q86U42 306 aaKnown RBP eCLIP28.5■■■□□ 2.15
RPP40-203ENST00000464646 DNAJC5BQ9UF47 199 aa28.44■■■□□ 2.14
RPP40-203ENST00000464646 UNC13AQ9UPW8 1703 aa28.37■■■□□ 2.13
RPP40-203ENST00000464646 MYO15BQ96JP2 1530 aa28.33■■■□□ 2.13
RPP40-203ENST00000464646 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
RPP40-203ENST00000464646 BICRAQ9NZM4 1560 aa28.08■■■□□ 2.09
RPP40-203ENST00000464646 DCAF1Q9Y4B6 1507 aa28.03■■■□□ 2.08
RPP40-203ENST00000464646 SCRIBQ14160 1630 aa27.94■■■□□ 2.06
RPP40-203ENST00000464646 SHROOM4Q9ULL8 1493 aa27.66■■■□□ 2.02
RPP40-203ENST00000464646 CC2D2AQ9P2K1 1620 aa27.52■■■□□ 2
RPP40-203ENST00000464646 EIF4G1Q04637 1599 aaKnown RBP27.45■■□□□ 1.99
RPP40-203ENST00000464646 CECR2Q9BXF3 1484 aa27.44■■□□□ 1.98
RPP40-203ENST00000464646 SMARCA4P51532 1647 aa26.57■■□□□ 1.84
RPP40-203ENST00000464646 NCAPD3P42695 1498 aa26.56■■□□□ 1.84
RPP40-203ENST00000464646 ATAD2BQ9ULI0 1458 aa26.55■■□□□ 1.84
RPP40-203ENST00000464646 SMARCA2P51531 1590 aa26.5■■□□□ 1.83
RPP40-203ENST00000464646 BAZ1AQ9NRL2 1556 aaPredicted RBP26.46■■□□□ 1.83
RPP40-203ENST00000464646 ERCC6Q03468 1493 aa26.41■■□□□ 1.82
RPP40-203ENST00000464646 HMGXB3Q12766 1538 aa26.39■■□□□ 1.81
RPP40-203ENST00000464646 BAZ1BQ9UIG0 1483 aaKnown RBP26.37■■□□□ 1.81
RPP40-203ENST00000464646 MROH2BQ7Z745 1585 aa26.28■■□□□ 1.8
RPP40-203ENST00000464646 NESP48681 1621 aa26.22■■□□□ 1.79
RPP40-203ENST00000464646 PEG3Q9GZU2 1588 aa26.2■■□□□ 1.78
RPP40-203ENST00000464646 CUX2O14529 1486 aa26.15■■□□□ 1.78
RPP40-203ENST00000464646 DNAJC5Q9H3Z4 198 aa26.03■■□□□ 1.76
RPP40-203ENST00000464646 WIZO95785 1651 aa26.03■■□□□ 1.76
RPP40-203ENST00000464646 LAMC3Q9Y6N6 1575 aa26■■□□□ 1.75
RPP40-203ENST00000464646 PDS5BQ9NTI5 1447 aa25.9■■□□□ 1.74
RPP40-203ENST00000464646 KIF21AQ7Z4S6 1674 aa25.89■■□□□ 1.73
RPP40-203ENST00000464646 THOC2Q8NI27 1593 aaKnown RBP25.85■■□□□ 1.73
RPP40-203ENST00000464646 CADPSQ9ULU8 1353 aa25.83■■□□□ 1.73
RPP40-203ENST00000464646 RSF1Q96T23 1441 aaPredicted RBP25.76■■□□□ 1.71
RPP40-203ENST00000464646 MRC2Q9UBG0 1479 aa25.65■■□□□ 1.7
RPP40-203ENST00000464646 TOP2AP11388 1531 aaKnown RBP25.64■■□□□ 1.7
RPP40-203ENST00000464646 CEP164Q9UPV0 1460 aa25.6■■□□□ 1.69
RPP40-203ENST00000464646 FANCD2Q9BXW9 1451 aa25.57■■□□□ 1.68
RPP40-203ENST00000464646 CFTRP13569 1480 aa25.52■■□□□ 1.68
RPP40-203ENST00000464646 WDR62O43379 1518 aa25.52■■□□□ 1.68
RPP40-203ENST00000464646 CCDC88BA6NC98 1476 aa25.38■■□□□ 1.65
RPP40-203ENST00000464646 PRDM2Q13029 1718 aa25.34■■□□□ 1.65
RPP40-203ENST00000464646 URB2Q14146 1524 aaKnown RBP25.31■■□□□ 1.64
RPP40-203ENST00000464646 AEBP2Q6ZN18 517 aaPredicted RBP25.25■■□□□ 1.63
RPP40-203ENST00000464646 TRIM41Q8WV44 630 aa25.18■■□□□ 1.62
RPP40-203ENST00000464646 OSCARQ8IYS5 282 aa25.1■■□□□ 1.61
RPP40-203ENST00000464646 TOPBP1Q92547 1522 aa25.08■■□□□ 1.61
RPP40-203ENST00000464646 IFT140Q96RY7 1462 aa25.05■■□□□ 1.6
RPP40-203ENST00000464646 ABCC8Q09428 1581 aa25.02■■□□□ 1.6
RPP40-203ENST00000464646 ZNF608Q9ULD9 1512 aaPredicted RBP25.01■■□□□ 1.59
RPP40-203ENST00000464646 SUPT5HO00267 1087 aaKnown RBP25■■□□□ 1.59
RPP40-203ENST00000464646 DNMBPQ6XZF7 1577 aa25■■□□□ 1.59
RPP40-203ENST00000464646 EIF4G3O43432 1585 aaKnown RBP24.88■■□□□ 1.57
RPP40-203ENST00000464646 AQRO60306 1485 aaKnown RBP eCLIP24.84■■□□□ 1.57
RPP40-203ENST00000464646 FBLN2P98095 1184 aa24.84■■□□□ 1.57
RPP40-203ENST00000464646 POLA1P09884 1462 aaPredicted RBP24.83■■□□□ 1.56
RPP40-203ENST00000464646 RAD54L2Q9Y4B4 1467 aa24.79■■□□□ 1.56
RPP40-203ENST00000464646 TARBP1Q13395 1621 aaKnown RBP24.79■■□□□ 1.56
RPP40-203ENST00000464646 SOGA1O94964 1423 aa24.78■■□□□ 1.56
RPP40-203ENST00000464646 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
RPP40-203ENST00000464646 FGD5Q6ZNL6 1462 aa24.72■■□□□ 1.55
RPP40-203ENST00000464646 CHD1O14646 1710 aa24.72■■□□□ 1.55
RPP40-203ENST00000464646 RIMBP3CA6NJZ7 1639 aa24.7■■□□□ 1.54
RPP40-203ENST00000464646 RIMBP3BA6NNM3 1639 aa24.7■■□□□ 1.54
RPP40-203ENST00000464646 RIMBP3Q9UFD9 1639 aa24.7■■□□□ 1.54
RPP40-203ENST00000464646 CUX1P39880 1505 aa24.68■■□□□ 1.54
RPP40-203ENST00000464646 ARHGEF11O15085 1522 aa24.61■■□□□ 1.53
RPP40-203ENST00000464646 CHMP7Q8WUX9 453 aaPredicted RBP24.59■■□□□ 1.53
RPP40-203ENST00000464646 SNAPC4Q5SXM2 1469 aa24.58■■□□□ 1.53
RPP40-203ENST00000464646 CYB5RLQ6IPT4 315 aa24.57■■□□□ 1.52
RPP40-203ENST00000464646 WDR97A6NE52 1622 aa24.52■■□□□ 1.52
RPP40-203ENST00000464646 GRIN2BQ13224 1484 aa24.51■■□□□ 1.51
RPP40-203ENST00000464646 GAPVD1Q14C86 1478 aa24.46■■□□□ 1.51
RPP40-203ENST00000464646 MAGI1Q96QZ7 1491 aaPredicted RBP24.46■■□□□ 1.51
RPP40-203ENST00000464646 PBRM1Q86U86 1689 aa24.46■■□□□ 1.51
RPP40-203ENST00000464646 SYNJ1O43426 1573 aa24.42■■□□□ 1.5
RPP40-203ENST00000464646 SYNJ2O15056 1496 aa24.4■■□□□ 1.5
RPP40-203ENST00000464646 ABCA10Q8WWZ4 1543 aa24.39■■□□□ 1.49
RPP40-203ENST00000464646 WRNQ14191 1432 aaPredicted RBP eCLIP24.38■■□□□ 1.49
RPP40-203ENST00000464646 ARAP1Q96P48 1450 aa24.37■■□□□ 1.49
RPP40-203ENST00000464646 TRHP20396 242 aaPredicted RBP24.36■■□□□ 1.49
RPP40-203ENST00000464646 ABCA5Q8WWZ7 1642 aa24.33■■□□□ 1.49
RPP40-203ENST00000464646 TOP2BQ02880 1626 aa24.32■■□□□ 1.48
RPP40-203ENST00000464646 CLASP1Q7Z460 1538 aa24.31■■□□□ 1.48
RPP40-203ENST00000464646 BIVM-ERCC5R4GMW8 1640 aa24.31■■□□□ 1.48
RPP40-203ENST00000464646 GRIN2AQ12879 1464 aa24.18■■□□□ 1.46
RPP40-203ENST00000464646 ADAMTS12P58397 1594 aa24.17■■□□□ 1.46
RPP40-203ENST00000464646 FHAD1B1AJZ9 1412 aa24.13■■□□□ 1.45
RPP40-203ENST00000464646 ERICH3Q5RHP9 1530 aa24.1■■□□□ 1.45
RPP40-203ENST00000464646 CEP170Q5SW79 1584 aa24.08■■□□□ 1.45
RPP40-203ENST00000464646 NUP160Q12769 1436 aa24.03■■□□□ 1.44
RPP40-203ENST00000464646 ERCC6L2Q5T890 1561 aa24.02■■□□□ 1.44
RPP40-203ENST00000464646 JPH4Q96JJ6 628 aa23.92■■□□□ 1.42
RPP40-203ENST00000464646 KIF27Q86VH2 1401 aa23.92■■□□□ 1.42
RPP40-203ENST00000464646 PRG4Q92954 1404 aaPredicted RBP23.92■■□□□ 1.42
RPP40-203ENST00000464646 SHROOM2Q13796 1616 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms