RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 NISCHQ9Y2I1 1504 aa41.24■■■■■ 4.19
VPS52-215ENST00000464425 CCDC180Q9P1Z9 1646 aa36.57■■■■□ 3.44
VPS52-215ENST00000464425 ABCC9O60706 1549 aa36■■■■□ 3.35
VPS52-215ENST00000464425 DCAF8L2P0C7V8 631 aa34.7■■■■□ 3.15
VPS52-215ENST00000464425 RB1CC1Q8TDY2 1594 aa34.51■■■■□ 3.12
VPS52-215ENST00000464425 NACADO15069 1562 aa34.46■■■■□ 3.11
VPS52-215ENST00000464425 ZCCHC6Q5VYS8 1495 aaKnown RBP34.33■■■■□ 3.09
VPS52-215ENST00000464425 MYO15BQ96JP2 1530 aa34.19■■■■□ 3.06
VPS52-215ENST00000464425 DCAF1Q9Y4B6 1507 aa34.04■■■■□ 3.04
VPS52-215ENST00000464425 PABPN1Q86U42 306 aaKnown RBP eCLIP33.73■■■□□ 2.99
VPS52-215ENST00000464425 UNC13AQ9UPW8 1703 aa33.69■■■□□ 2.98
VPS52-215ENST00000464425 SCRIBQ14160 1630 aa33.5■■■□□ 2.95
VPS52-215ENST00000464425 BICRAQ9NZM4 1560 aa33.48■■■□□ 2.95
VPS52-215ENST00000464425 DNAJC5BQ9UF47 199 aa33.15■■■□□ 2.9
VPS52-215ENST00000464425 SHROOM4Q9ULL8 1493 aa33.03■■■□□ 2.88
VPS52-215ENST00000464425 EIF4G1Q04637 1599 aaKnown RBP32.61■■■□□ 2.81
VPS52-215ENST00000464425 CC2D2AQ9P2K1 1620 aa32.5■■■□□ 2.79
VPS52-215ENST00000464425 CECR2Q9BXF3 1484 aa32.33■■■□□ 2.77
VPS52-215ENST00000464425 SMARCA4P51532 1647 aa31.98■■■□□ 2.71
VPS52-215ENST00000464425 BAZ1AQ9NRL2 1556 aaPredicted RBP31.94■■■□□ 2.7
VPS52-215ENST00000464425 ATAD2BQ9ULI0 1458 aa31.87■■■□□ 2.69
VPS52-215ENST00000464425 NCAPD3P42695 1498 aa31.84■■■□□ 2.69
VPS52-215ENST00000464425 MROH2BQ7Z745 1585 aa31.81■■■□□ 2.68
VPS52-215ENST00000464425 SMARCA2P51531 1590 aa31.77■■■□□ 2.68
VPS52-215ENST00000464425 PEG3Q9GZU2 1588 aa31.63■■■□□ 2.65
VPS52-215ENST00000464425 HMGXB3Q12766 1538 aa31.61■■■□□ 2.65
VPS52-215ENST00000464425 BAZ1BQ9UIG0 1483 aaKnown RBP31.6■■■□□ 2.65
VPS52-215ENST00000464425 WIZO95785 1651 aa31.46■■■□□ 2.63
VPS52-215ENST00000464425 RSF1Q96T23 1441 aaPredicted RBP31.46■■■□□ 2.63
VPS52-215ENST00000464425 NESP48681 1621 aa31.14■■■□□ 2.58
VPS52-215ENST00000464425 TOP2AP11388 1531 aaKnown RBP31.08■■■□□ 2.57
VPS52-215ENST00000464425 ERCC6Q03468 1493 aa31.02■■■□□ 2.56
VPS52-215ENST00000464425 LAMC3Q9Y6N6 1575 aa30.95■■■□□ 2.54
VPS52-215ENST00000464425 CADPSQ9ULU8 1353 aa30.94■■■□□ 2.54
VPS52-215ENST00000464425 PDS5BQ9NTI5 1447 aa30.81■■■□□ 2.52
VPS52-215ENST00000464425 CCDC88BA6NC98 1476 aa30.79■■■□□ 2.52
VPS52-215ENST00000464425 SUPT5HO00267 1087 aaKnown RBP30.78■■■□□ 2.52
VPS52-215ENST00000464425 CFTRP13569 1480 aa30.72■■■□□ 2.51
VPS52-215ENST00000464425 KIF21AQ7Z4S6 1674 aa30.68■■■□□ 2.5
VPS52-215ENST00000464425 CUX2O14529 1486 aa30.63■■■□□ 2.49
VPS52-215ENST00000464425 FANCD2Q9BXW9 1451 aa30.58■■■□□ 2.49
VPS52-215ENST00000464425 THOC2Q8NI27 1593 aaKnown RBP30.57■■■□□ 2.48
VPS52-215ENST00000464425 CEP164Q9UPV0 1460 aa30.52■■■□□ 2.48
VPS52-215ENST00000464425 MRC2Q9UBG0 1479 aa30.49■■■□□ 2.47
VPS52-215ENST00000464425 PRDM2Q13029 1718 aa30.36■■■□□ 2.45
VPS52-215ENST00000464425 WDR62O43379 1518 aa30.35■■■□□ 2.45
VPS52-215ENST00000464425 URB2Q14146 1524 aaKnown RBP30.27■■■□□ 2.44
VPS52-215ENST00000464425 TOPBP1Q92547 1522 aa30.07■■■□□ 2.4
VPS52-215ENST00000464425 ABCC8Q09428 1581 aa30.03■■■□□ 2.4
VPS52-215ENST00000464425 DNMBPQ6XZF7 1577 aa29.99■■■□□ 2.39
VPS52-215ENST00000464425 IFT140Q96RY7 1462 aa29.88■■■□□ 2.37
VPS52-215ENST00000464425 CUX1P39880 1505 aa29.85■■■□□ 2.37
VPS52-215ENST00000464425 DNAJC5Q9H3Z4 198 aa29.83■■■□□ 2.37
VPS52-215ENST00000464425 POLA1P09884 1462 aaPredicted RBP29.81■■■□□ 2.36
VPS52-215ENST00000464425 ZNF608Q9ULD9 1512 aaPredicted RBP29.8■■■□□ 2.36
VPS52-215ENST00000464425 FGD5Q6ZNL6 1462 aa29.75■■■□□ 2.35
VPS52-215ENST00000464425 RAD54L2Q9Y4B4 1467 aa29.75■■■□□ 2.35
VPS52-215ENST00000464425 SOGA1O94964 1423 aa29.74■■■□□ 2.35
VPS52-215ENST00000464425 TARBP1Q13395 1621 aaKnown RBP29.71■■■□□ 2.35
VPS52-215ENST00000464425 AQRO60306 1485 aaKnown RBP eCLIP29.66■■■□□ 2.341e-8■■■■■ 28.6
VPS52-215ENST00000464425 WRNQ14191 1432 aaPredicted RBP eCLIP29.65■■■□□ 2.34
VPS52-215ENST00000464425 TDRD9Q8NDG6 1382 aaKnown RBP29.61■■■□□ 2.33
VPS52-215ENST00000464425 EIF4G3O43432 1585 aaKnown RBP29.6■■■□□ 2.33
VPS52-215ENST00000464425 SYNJ1O43426 1573 aa29.56■■■□□ 2.32
VPS52-215ENST00000464425 TOP2BQ02880 1626 aa29.53■■■□□ 2.32
VPS52-215ENST00000464425 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
VPS52-215ENST00000464425 OSCARQ8IYS5 282 aa29.47■■■□□ 2.31
VPS52-215ENST00000464425 ABCA10Q8WWZ4 1543 aa29.43■■■□□ 2.3
VPS52-215ENST00000464425 WDR97A6NE52 1622 aa29.4■■■□□ 2.3
VPS52-215ENST00000464425 FBLN2P98095 1184 aa29.39■■■□□ 2.3
VPS52-215ENST00000464425 GAPVD1Q14C86 1478 aa29.37■■■□□ 2.29
VPS52-215ENST00000464425 GRIN2BQ13224 1484 aa29.36■■■□□ 2.29
VPS52-215ENST00000464425 SNAPC4Q5SXM2 1469 aa29.33■■■□□ 2.29
VPS52-215ENST00000464425 ABCA5Q8WWZ7 1642 aa29.28■■■□□ 2.28
VPS52-215ENST00000464425 CHMP7Q8WUX9 453 aaPredicted RBP29.25■■■□□ 2.27
VPS52-215ENST00000464425 MAGI1Q96QZ7 1491 aaPredicted RBP29.24■■■□□ 2.27
VPS52-215ENST00000464425 CHD1O14646 1710 aa29.23■■■□□ 2.27
VPS52-215ENST00000464425 PBRM1Q86U86 1689 aa29.22■■■□□ 2.27
VPS52-215ENST00000464425 SYNJ2O15056 1496 aa29.16■■■□□ 2.26
VPS52-215ENST00000464425 ERICH3Q5RHP9 1530 aa29.06■■■□□ 2.24
VPS52-215ENST00000464425 KIF27Q86VH2 1401 aa29.04■■■□□ 2.24
VPS52-215ENST00000464425 TRIM41Q8WV44 630 aa29.03■■■□□ 2.24
VPS52-215ENST00000464425 FHAD1B1AJZ9 1412 aa29.02■■■□□ 2.24
VPS52-215ENST00000464425 ADAMTS12P58397 1594 aa29.01■■■□□ 2.24
VPS52-215ENST00000464425 GRIN2AQ12879 1464 aa28.97■■■□□ 2.23
VPS52-215ENST00000464425 IGF1RP08069 1367 aa28.96■■■□□ 2.23
VPS52-215ENST00000464425 CLASP1Q7Z460 1538 aa28.92■■■□□ 2.22
VPS52-215ENST00000464425 ARHGEF11O15085 1522 aa28.91■■■□□ 2.22
VPS52-215ENST00000464425 RIMBP3CA6NJZ7 1639 aa28.91■■■□□ 2.22
VPS52-215ENST00000464425 RIMBP3BA6NNM3 1639 aa28.91■■■□□ 2.22
VPS52-215ENST00000464425 RIMBP3Q9UFD9 1639 aa28.91■■■□□ 2.22
VPS52-215ENST00000464425 NUP160Q12769 1436 aa28.84■■■□□ 2.21
VPS52-215ENST00000464425 RUSC2Q8N2Y8 1516 aa28.82■■■□□ 2.2
VPS52-215ENST00000464425 CEP170Q5SW79 1584 aa28.82■■■□□ 2.2
VPS52-215ENST00000464425 CARMIL1Q5VZK9 1371 aa28.79■■■□□ 2.2
VPS52-215ENST00000464425 CYB5RLQ6IPT4 315 aa28.78■■■□□ 2.2
VPS52-215ENST00000464425 CUL7Q14999 1698 aa28.76■■■□□ 2.19
VPS52-215ENST00000464425 ARAP1Q96P48 1450 aa28.69■■■□□ 2.18
VPS52-215ENST00000464425 CHIC1Q5VXU3 224 aa28.65■■■□□ 2.18
VPS52-215ENST00000464425 JPH4Q96JJ6 628 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 285.9 ms