RNA–Protein interactions for RNA: ENST00000464255.1

CTDSP1-206, Transcript of CTD small phosphatase 1, humanhuman

TSL 5

Gene CTDSP1, Length 926 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-206ENST00000464255 NISCHQ9Y2I1 1504 aa32.55■■■□□ 2.8
CTDSP1-206ENST00000464255 CCDC180Q9P1Z9 1646 aa28.98■■■□□ 2.23
CTDSP1-206ENST00000464255 ABCC9O60706 1549 aa28.81■■■□□ 2.2
CTDSP1-206ENST00000464255 RB1CC1Q8TDY2 1594 aa27.48■■□□□ 1.99
CTDSP1-206ENST00000464255 NACADO15069 1562 aa27.39■■□□□ 1.98
CTDSP1-206ENST00000464255 DCAF8L2P0C7V8 631 aa27.32■■□□□ 1.96
CTDSP1-206ENST00000464255 MYO15BQ96JP2 1530 aa27.14■■□□□ 1.94
CTDSP1-206ENST00000464255 ZCCHC6Q5VYS8 1495 aaKnown RBP27.01■■□□□ 1.91
CTDSP1-206ENST00000464255 DNAJC5BQ9UF47 199 aa26.95■■□□□ 1.9
CTDSP1-206ENST00000464255 PABPN1Q86U42 306 aaKnown RBP eCLIP26.93■■□□□ 1.96e-15■■■■■ 28.9
CTDSP1-206ENST00000464255 DCAF1Q9Y4B6 1507 aa26.89■■□□□ 1.89
CTDSP1-206ENST00000464255 UNC13AQ9UPW8 1703 aa26.87■■□□□ 1.89
CTDSP1-206ENST00000464255 BICRAQ9NZM4 1560 aa26.78■■□□□ 1.88
CTDSP1-206ENST00000464255 SCRIBQ14160 1630 aa26.46■■□□□ 1.83
CTDSP1-206ENST00000464255 SHROOM4Q9ULL8 1493 aa26.35■■□□□ 1.81
CTDSP1-206ENST00000464255 EIF4G1Q04637 1599 aaKnown RBP26.04■■□□□ 1.76
CTDSP1-206ENST00000464255 CC2D2AQ9P2K1 1620 aa26.03■■□□□ 1.76
CTDSP1-206ENST00000464255 CECR2Q9BXF3 1484 aa25.92■■□□□ 1.74
CTDSP1-206ENST00000464255 NCAPD3P42695 1498 aa25.35■■□□□ 1.65
CTDSP1-206ENST00000464255 ATAD2BQ9ULI0 1458 aa25.3■■□□□ 1.64
CTDSP1-206ENST00000464255 SMARCA4P51532 1647 aa25.29■■□□□ 1.64
CTDSP1-206ENST00000464255 BAZ1AQ9NRL2 1556 aaPredicted RBP25.18■■□□□ 1.62
CTDSP1-206ENST00000464255 SMARCA2P51531 1590 aa25.17■■□□□ 1.62
CTDSP1-206ENST00000464255 HMGXB3Q12766 1538 aa25.12■■□□□ 1.61
CTDSP1-206ENST00000464255 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
CTDSP1-206ENST00000464255 PEG3Q9GZU2 1588 aa25.08■■□□□ 1.61
CTDSP1-206ENST00000464255 BAZ1BQ9UIG0 1483 aaKnown RBP25.01■■□□□ 1.59
CTDSP1-206ENST00000464255 NESP48681 1621 aa24.86■■□□□ 1.57
CTDSP1-206ENST00000464255 ERCC6Q03468 1493 aa24.79■■□□□ 1.56
CTDSP1-206ENST00000464255 WIZO95785 1651 aa24.76■■□□□ 1.55
CTDSP1-206ENST00000464255 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
CTDSP1-206ENST00000464255 CUX2O14529 1486 aa24.7■■□□□ 1.54
CTDSP1-206ENST00000464255 LAMC3Q9Y6N6 1575 aa24.65■■□□□ 1.54
CTDSP1-206ENST00000464255 CADPSQ9ULU8 1353 aa24.58■■□□□ 1.53
CTDSP1-206ENST00000464255 PDS5BQ9NTI5 1447 aa24.52■■□□□ 1.52
CTDSP1-206ENST00000464255 THOC2Q8NI27 1593 aaKnown RBP24.5■■□□□ 1.51
CTDSP1-206ENST00000464255 DNAJC5Q9H3Z4 198 aa24.48■■□□□ 1.51
CTDSP1-206ENST00000464255 KIF21AQ7Z4S6 1674 aa24.46■■□□□ 1.51
CTDSP1-206ENST00000464255 TOP2AP11388 1531 aaKnown RBP24.45■■□□□ 1.51
CTDSP1-206ENST00000464255 CFTRP13569 1480 aa24.36■■□□□ 1.49
CTDSP1-206ENST00000464255 MRC2Q9UBG0 1479 aa24.3■■□□□ 1.48
CTDSP1-206ENST00000464255 FANCD2Q9BXW9 1451 aa24.26■■□□□ 1.47
CTDSP1-206ENST00000464255 CCDC88BA6NC98 1476 aa24.25■■□□□ 1.47
CTDSP1-206ENST00000464255 WDR62O43379 1518 aa24.24■■□□□ 1.47
CTDSP1-206ENST00000464255 CEP164Q9UPV0 1460 aa24.23■■□□□ 1.47
CTDSP1-206ENST00000464255 URB2Q14146 1524 aaKnown RBP24.09■■□□□ 1.45
CTDSP1-206ENST00000464255 PRDM2Q13029 1718 aa23.99■■□□□ 1.43
CTDSP1-206ENST00000464255 TOPBP1Q92547 1522 aa23.84■■□□□ 1.41
CTDSP1-206ENST00000464255 ABCC8Q09428 1581 aa23.77■■□□□ 1.4
CTDSP1-206ENST00000464255 IFT140Q96RY7 1462 aa23.76■■□□□ 1.39
CTDSP1-206ENST00000464255 ZNF608Q9ULD9 1512 aaPredicted RBP23.76■■□□□ 1.39
CTDSP1-206ENST00000464255 SUPT5HO00267 1087 aaKnown RBP23.75■■□□□ 1.39
CTDSP1-206ENST00000464255 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
CTDSP1-206ENST00000464255 OSCARQ8IYS5 282 aa23.66■■□□□ 1.38
CTDSP1-206ENST00000464255 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
CTDSP1-206ENST00000464255 TARBP1Q13395 1621 aaKnown RBP23.62■■□□□ 1.37
CTDSP1-206ENST00000464255 AQRO60306 1485 aaKnown RBP eCLIP23.57■■□□□ 1.366e-12■■■■■ 82.1
CTDSP1-206ENST00000464255 RAD54L2Q9Y4B4 1467 aa23.56■■□□□ 1.36
CTDSP1-206ENST00000464255 CUX1P39880 1505 aa23.55■■□□□ 1.36
CTDSP1-206ENST00000464255 EIF4G3O43432 1585 aaKnown RBP23.55■■□□□ 1.36
CTDSP1-206ENST00000464255 SOGA1O94964 1423 aa23.52■■□□□ 1.36
CTDSP1-206ENST00000464255 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
CTDSP1-206ENST00000464255 TDRD9Q8NDG6 1382 aaKnown RBP23.48■■□□□ 1.35
CTDSP1-206ENST00000464255 TRIM41Q8WV44 630 aa23.43■■□□□ 1.34
CTDSP1-206ENST00000464255 WDR97A6NE52 1622 aa23.32■■□□□ 1.32
CTDSP1-206ENST00000464255 CHD1O14646 1710 aa23.3■■□□□ 1.32
CTDSP1-206ENST00000464255 FBLN2P98095 1184 aa23.3■■□□□ 1.32
CTDSP1-206ENST00000464255 SNAPC4Q5SXM2 1469 aa23.29■■□□□ 1.32
CTDSP1-206ENST00000464255 RIMBP3CA6NJZ7 1639 aa23.27■■□□□ 1.32
CTDSP1-206ENST00000464255 RIMBP3BA6NNM3 1639 aa23.27■■□□□ 1.32
CTDSP1-206ENST00000464255 RIMBP3Q9UFD9 1639 aa23.27■■□□□ 1.32
CTDSP1-206ENST00000464255 GRIN2BQ13224 1484 aa23.26■■□□□ 1.31
CTDSP1-206ENST00000464255 ABCA10Q8WWZ4 1543 aa23.26■■□□□ 1.31
CTDSP1-206ENST00000464255 ARHGEF11O15085 1522 aa23.25■■□□□ 1.31
CTDSP1-206ENST00000464255 WRNQ14191 1432 aaPredicted RBP eCLIP23.23■■□□□ 1.31
CTDSP1-206ENST00000464255 GAPVD1Q14C86 1478 aa23.23■■□□□ 1.31
CTDSP1-206ENST00000464255 MAGI1Q96QZ7 1491 aaPredicted RBP23.23■■□□□ 1.31
CTDSP1-206ENST00000464255 SYNJ1O43426 1573 aa23.21■■□□□ 1.31
CTDSP1-206ENST00000464255 TOP2BQ02880 1626 aa23.21■■□□□ 1.31
CTDSP1-206ENST00000464255 CHMP7Q8WUX9 453 aaPredicted RBP23.19■■□□□ 1.3
CTDSP1-206ENST00000464255 BIVM-ERCC5R4GMW8 1640 aa23.19■■□□□ 1.3
CTDSP1-206ENST00000464255 ABCA5Q8WWZ7 1642 aa23.18■■□□□ 1.3
CTDSP1-206ENST00000464255 SYNJ2O15056 1496 aa23.16■■□□□ 1.3
CTDSP1-206ENST00000464255 PBRM1Q86U86 1689 aa23.13■■□□□ 1.29
CTDSP1-206ENST00000464255 CLASP1Q7Z460 1538 aa23.12■■□□□ 1.29
CTDSP1-206ENST00000464255 CYB5RLQ6IPT4 315 aa23.1■■□□□ 1.29
CTDSP1-206ENST00000464255 ARAP1Q96P48 1450 aa23.06■■□□□ 1.28
CTDSP1-206ENST00000464255 GRIN2AQ12879 1464 aa22.97■■□□□ 1.27
CTDSP1-206ENST00000464255 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
CTDSP1-206ENST00000464255 FHAD1B1AJZ9 1412 aa22.95■■□□□ 1.26
CTDSP1-206ENST00000464255 ERICH3Q5RHP9 1530 aa22.94■■□□□ 1.26
CTDSP1-206ENST00000464255 NUP160Q12769 1436 aa22.92■■□□□ 1.26
CTDSP1-206ENST00000464255 CEP170Q5SW79 1584 aa22.89■■□□□ 1.25
CTDSP1-206ENST00000464255 IGF1RP08069 1367 aa22.82■■□□□ 1.24
CTDSP1-206ENST00000464255 ERCC6L2Q5T890 1561 aa22.81■■□□□ 1.24
CTDSP1-206ENST00000464255 SHROOM2Q13796 1616 aa22.75■■□□□ 1.23
CTDSP1-206ENST00000464255 KIF27Q86VH2 1401 aa22.75■■□□□ 1.23
CTDSP1-206ENST00000464255 JPH4Q96JJ6 628 aa22.7■■□□□ 1.22
CTDSP1-206ENST00000464255 TRHP20396 242 aaPredicted RBP22.68■■□□□ 1.22
CTDSP1-206ENST00000464255 PRG4Q92954 1404 aaPredicted RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms