RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 NISCHQ9Y2I1 1504 aa23.04■■□□□ 1.28
PTPRD-207ENST00000463477 CCDC180Q9P1Z9 1646 aa20.41■□□□□ 0.86
PTPRD-207ENST00000463477 ABCC9O60706 1549 aa20.02■□□□□ 0.8
PTPRD-207ENST00000463477 DCAF8L2P0C7V8 631 aa19.3■□□□□ 0.68
PTPRD-207ENST00000463477 NACADO15069 1562 aa19.26■□□□□ 0.67
PTPRD-207ENST00000463477 RB1CC1Q8TDY2 1594 aa19.26■□□□□ 0.67
PTPRD-207ENST00000463477 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
PTPRD-207ENST00000463477 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
PTPRD-207ENST00000463477 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
PTPRD-207ENST00000463477 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
PTPRD-207ENST00000463477 UNC13AQ9UPW8 1703 aa18.74■□□□□ 0.59
PTPRD-207ENST00000463477 BICRAQ9NZM4 1560 aa18.67■□□□□ 0.58
PTPRD-207ENST00000463477 SCRIBQ14160 1630 aa18.6■□□□□ 0.57
PTPRD-207ENST00000463477 SHROOM4Q9ULL8 1493 aa18.5■□□□□ 0.55
PTPRD-207ENST00000463477 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
PTPRD-207ENST00000463477 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
PTPRD-207ENST00000463477 CC2D2AQ9P2K1 1620 aa18.1■□□□□ 0.49
PTPRD-207ENST00000463477 CECR2Q9BXF3 1484 aa18.01■□□□□ 0.47
PTPRD-207ENST00000463477 BAZ1AQ9NRL2 1556 aaPredicted RBP17.84■□□□□ 0.45
PTPRD-207ENST00000463477 SMARCA4P51532 1647 aa17.83■□□□□ 0.44
PTPRD-207ENST00000463477 NCAPD3P42695 1498 aa17.81■□□□□ 0.44
PTPRD-207ENST00000463477 ATAD2BQ9ULI0 1458 aa17.79■□□□□ 0.44
PTPRD-207ENST00000463477 SMARCA2P51531 1590 aa17.75■□□□□ 0.43
PTPRD-207ENST00000463477 MROH2BQ7Z745 1585 aa17.73■□□□□ 0.43
PTPRD-207ENST00000463477 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
PTPRD-207ENST00000463477 HMGXB3Q12766 1538 aa17.66■□□□□ 0.42
PTPRD-207ENST00000463477 BAZ1BQ9UIG0 1483 aaKnown RBP17.61■□□□□ 0.41
PTPRD-207ENST00000463477 RSF1Q96T23 1441 aaPredicted RBP17.57■□□□□ 0.4
PTPRD-207ENST00000463477 WIZO95785 1651 aa17.51■□□□□ 0.39
PTPRD-207ENST00000463477 TOP2AP11388 1531 aaKnown RBP17.34■□□□□ 0.37
PTPRD-207ENST00000463477 NESP48681 1621 aa17.33■□□□□ 0.36
PTPRD-207ENST00000463477 CADPSQ9ULU8 1353 aa17.3■□□□□ 0.36
PTPRD-207ENST00000463477 LAMC3Q9Y6N6 1575 aa17.28■□□□□ 0.36
PTPRD-207ENST00000463477 ERCC6Q03468 1493 aa17.26■□□□□ 0.35
PTPRD-207ENST00000463477 PDS5BQ9NTI5 1447 aa17.22■□□□□ 0.35
PTPRD-207ENST00000463477 CCDC88BA6NC98 1476 aa17.17■□□□□ 0.34
PTPRD-207ENST00000463477 CFTRP13569 1480 aa17.17■□□□□ 0.34
PTPRD-207ENST00000463477 SUPT5HO00267 1087 aaKnown RBP17.12■□□□□ 0.33
PTPRD-207ENST00000463477 CUX2O14529 1486 aa17.1■□□□□ 0.33
PTPRD-207ENST00000463477 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
PTPRD-207ENST00000463477 FANCD2Q9BXW9 1451 aa17.05■□□□□ 0.32
PTPRD-207ENST00000463477 THOC2Q8NI27 1593 aaKnown RBP17.02■□□□□ 0.32
PTPRD-207ENST00000463477 CEP164Q9UPV0 1460 aa17.02■□□□□ 0.31
PTPRD-207ENST00000463477 MRC2Q9UBG0 1479 aa17■□□□□ 0.31
PTPRD-207ENST00000463477 WDR62O43379 1518 aa16.93■□□□□ 0.3
PTPRD-207ENST00000463477 PRDM2Q13029 1718 aa16.91■□□□□ 0.3
PTPRD-207ENST00000463477 URB2Q14146 1524 aaKnown RBP16.86■□□□□ 0.29
PTPRD-207ENST00000463477 ABCC8Q09428 1581 aa16.81■□□□□ 0.28
PTPRD-207ENST00000463477 AEBP2Q6ZN18 517 aaPredicted RBP16.8■□□□□ 0.28
PTPRD-207ENST00000463477 TOPBP1Q92547 1522 aa16.77■□□□□ 0.28
PTPRD-207ENST00000463477 DNMBPQ6XZF7 1577 aa16.73■□□□□ 0.27
PTPRD-207ENST00000463477 IFT140Q96RY7 1462 aa16.68■□□□□ 0.26
PTPRD-207ENST00000463477 DNAJC5Q9H3Z4 198 aa16.67■□□□□ 0.26
PTPRD-207ENST00000463477 POLA1P09884 1462 aaPredicted RBP16.63■□□□□ 0.25
PTPRD-207ENST00000463477 CUX1P39880 1505 aa16.63■□□□□ 0.25
PTPRD-207ENST00000463477 SOGA1O94964 1423 aa16.6■□□□□ 0.25
PTPRD-207ENST00000463477 CHIC1Q5VXU3 224 aa16.59■□□□□ 0.25
PTPRD-207ENST00000463477 ZNF608Q9ULD9 1512 aaPredicted RBP16.59■□□□□ 0.25
PTPRD-207ENST00000463477 FGD5Q6ZNL6 1462 aa16.57■□□□□ 0.24
PTPRD-207ENST00000463477 TARBP1Q13395 1621 aaKnown RBP16.57■□□□□ 0.24
PTPRD-207ENST00000463477 RAD54L2Q9Y4B4 1467 aa16.56■□□□□ 0.24
PTPRD-207ENST00000463477 WRNQ14191 1432 aaPredicted RBP eCLIP16.55■□□□□ 0.24
PTPRD-207ENST00000463477 AQRO60306 1485 aaKnown RBP eCLIP16.52■□□□□ 0.24
PTPRD-207ENST00000463477 TDRD9Q8NDG6 1382 aaKnown RBP16.5■□□□□ 0.23
PTPRD-207ENST00000463477 TOP2BQ02880 1626 aa16.48■□□□□ 0.23
PTPRD-207ENST00000463477 OSCARQ8IYS5 282 aa16.47■□□□□ 0.23
PTPRD-207ENST00000463477 EIF4G3O43432 1585 aaKnown RBP16.47■□□□□ 0.23
PTPRD-207ENST00000463477 BIVM-ERCC5R4GMW8 1640 aa16.45■□□□□ 0.22
PTPRD-207ENST00000463477 WDR97A6NE52 1622 aa16.45■□□□□ 0.22
PTPRD-207ENST00000463477 SYNJ1O43426 1573 aa16.45■□□□□ 0.22
PTPRD-207ENST00000463477 ABCA10Q8WWZ4 1543 aa16.44■□□□□ 0.22
PTPRD-207ENST00000463477 GRIN2BQ13224 1484 aa16.38■□□□□ 0.21
PTPRD-207ENST00000463477 GAPVD1Q14C86 1478 aa16.38■□□□□ 0.21
PTPRD-207ENST00000463477 FBLN2P98095 1184 aa16.34■□□□□ 0.21
PTPRD-207ENST00000463477 SNAPC4Q5SXM2 1469 aa16.33■□□□□ 0.2
PTPRD-207ENST00000463477 MAGI1Q96QZ7 1491 aaPredicted RBP16.33■□□□□ 0.2
PTPRD-207ENST00000463477 CHMP7Q8WUX9 453 aaPredicted RBP16.32■□□□□ 0.2
PTPRD-207ENST00000463477 ABCA5Q8WWZ7 1642 aa16.32■□□□□ 0.2
PTPRD-207ENST00000463477 SYNJ2O15056 1496 aa16.27■□□□□ 0.2
PTPRD-207ENST00000463477 PBRM1Q86U86 1689 aa16.25■□□□□ 0.19
PTPRD-207ENST00000463477 CHD1O14646 1710 aa16.24■□□□□ 0.19
PTPRD-207ENST00000463477 ERICH3Q5RHP9 1530 aa16.23■□□□□ 0.19
PTPRD-207ENST00000463477 KIF27Q86VH2 1401 aa16.22■□□□□ 0.19
PTPRD-207ENST00000463477 FHAD1B1AJZ9 1412 aa16.21■□□□□ 0.19
PTPRD-207ENST00000463477 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
PTPRD-207ENST00000463477 IGF1RP08069 1367 aa16.19■□□□□ 0.18
PTPRD-207ENST00000463477 ADAMTS12P58397 1594 aa16.16■□□□□ 0.18
PTPRD-207ENST00000463477 GRIN2AQ12879 1464 aa16.15■□□□□ 0.18
PTPRD-207ENST00000463477 CLASP1Q7Z460 1538 aa16.12■□□□□ 0.17
PTPRD-207ENST00000463477 ARHGEF11O15085 1522 aa16.11■□□□□ 0.17
PTPRD-207ENST00000463477 NUP160Q12769 1436 aa16.11■□□□□ 0.17
PTPRD-207ENST00000463477 CARMIL1Q5VZK9 1371 aa16.08■□□□□ 0.16
PTPRD-207ENST00000463477 RIMBP3CA6NJZ7 1639 aa16.08■□□□□ 0.16
PTPRD-207ENST00000463477 RIMBP3BA6NNM3 1639 aa16.08■□□□□ 0.16
PTPRD-207ENST00000463477 RIMBP3Q9UFD9 1639 aa16.08■□□□□ 0.16
PTPRD-207ENST00000463477 CEP170Q5SW79 1584 aa16.05■□□□□ 0.16
PTPRD-207ENST00000463477 RUSC2Q8N2Y8 1516 aa16.04■□□□□ 0.16
PTPRD-207ENST00000463477 CUL7Q14999 1698 aa16.04■□□□□ 0.16
PTPRD-207ENST00000463477 CYB5RLQ6IPT4 315 aa16.03■□□□□ 0.16
PTPRD-207ENST00000463477 JPH4Q96JJ6 628 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms