RNA–Protein interactions for RNA: ENST00000461869.5

SF3A3-203, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 3

Gene SF3A3, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-203ENST00000461869 NISCHQ9Y2I1 1504 aa38.45■■■■□ 3.75
SF3A3-203ENST00000461869 ABCC9O60706 1549 aa34.88■■■■□ 3.17
SF3A3-203ENST00000461869 CCDC180Q9P1Z9 1646 aa34.55■■■■□ 3.12
SF3A3-203ENST00000461869 RB1CC1Q8TDY2 1594 aa33.06■■■□□ 2.88
SF3A3-203ENST00000461869 DNAJC5BQ9UF47 199 aa32.96■■■□□ 2.87
SF3A3-203ENST00000461869 NACADO15069 1562 aa32.78■■■□□ 2.84
SF3A3-203ENST00000461869 DCAF8L2P0C7V8 631 aa32.67■■■□□ 2.82
SF3A3-203ENST00000461869 PABPN1Q86U42 306 aaKnown RBP eCLIP32.47■■■□□ 2.79
SF3A3-203ENST00000461869 UNC13AQ9UPW8 1703 aa32.24■■■□□ 2.75
SF3A3-203ENST00000461869 MYO15BQ96JP2 1530 aa32.23■■■□□ 2.75
SF3A3-203ENST00000461869 BICRAQ9NZM4 1560 aa32.09■■■□□ 2.73
SF3A3-203ENST00000461869 ZCCHC6Q5VYS8 1495 aaKnown RBP31.79■■■□□ 2.68
SF3A3-203ENST00000461869 DCAF1Q9Y4B6 1507 aa31.72■■■□□ 2.67
SF3A3-203ENST00000461869 SHROOM4Q9ULL8 1493 aa31.63■■■□□ 2.65
SF3A3-203ENST00000461869 SCRIBQ14160 1630 aa31.52■■■□□ 2.64
SF3A3-203ENST00000461869 CC2D2AQ9P2K1 1620 aa31.46■■■□□ 2.63
SF3A3-203ENST00000461869 CECR2Q9BXF3 1484 aa31.44■■■□□ 2.62
SF3A3-203ENST00000461869 EIF4G1Q04637 1599 aaKnown RBP31.34■■■□□ 2.61
SF3A3-203ENST00000461869 DNAJC5Q9H3Z4 198 aa30.46■■■□□ 2.47
SF3A3-203ENST00000461869 NCAPD3P42695 1498 aa30.28■■■□□ 2.44
SF3A3-203ENST00000461869 ATAD2BQ9ULI0 1458 aa30.15■■■□□ 2.42
SF3A3-203ENST00000461869 CUX2O14529 1486 aa30.14■■■□□ 2.42
SF3A3-203ENST00000461869 ERCC6Q03468 1493 aa30.14■■■□□ 2.42
SF3A3-203ENST00000461869 SMARCA2P51531 1590 aa30.03■■■□□ 2.4
SF3A3-203ENST00000461869 SMARCA4P51532 1647 aa30.02■■■□□ 2.4
SF3A3-203ENST00000461869 HMGXB3Q12766 1538 aa29.99■■■□□ 2.39
SF3A3-203ENST00000461869 NESP48681 1621 aa29.88■■■□□ 2.37
SF3A3-203ENST00000461869 BAZ1AQ9NRL2 1556 aaPredicted RBP29.86■■■□□ 2.37
SF3A3-203ENST00000461869 BAZ1BQ9UIG0 1483 aaKnown RBP29.85■■■□□ 2.37
SF3A3-203ENST00000461869 PEG3Q9GZU2 1588 aa29.73■■■□□ 2.35
SF3A3-203ENST00000461869 MROH2BQ7Z745 1585 aa29.63■■■□□ 2.33
SF3A3-203ENST00000461869 LAMC3Q9Y6N6 1575 aa29.61■■■□□ 2.33
SF3A3-203ENST00000461869 THOC2Q8NI27 1593 aaKnown RBP29.58■■■□□ 2.33
SF3A3-203ENST00000461869 PDS5BQ9NTI5 1447 aa29.49■■■□□ 2.31
SF3A3-203ENST00000461869 KIF21AQ7Z4S6 1674 aa29.44■■■□□ 2.3
SF3A3-203ENST00000461869 CADPSQ9ULU8 1353 aa29.37■■■□□ 2.29
SF3A3-203ENST00000461869 WIZO95785 1651 aa29.25■■■□□ 2.27
SF3A3-203ENST00000461869 MRC2Q9UBG0 1479 aa29.23■■■□□ 2.27
SF3A3-203ENST00000461869 WDR62O43379 1518 aa29.15■■■□□ 2.26
SF3A3-203ENST00000461869 CEP164Q9UPV0 1460 aa29.06■■■□□ 2.24
SF3A3-203ENST00000461869 TRIM41Q8WV44 630 aa29.04■■■□□ 2.24
SF3A3-203ENST00000461869 FANCD2Q9BXW9 1451 aa29.02■■■□□ 2.24
SF3A3-203ENST00000461869 CFTRP13569 1480 aa28.96■■■□□ 2.23
SF3A3-203ENST00000461869 RSF1Q96T23 1441 aaPredicted RBP28.94■■■□□ 2.22
SF3A3-203ENST00000461869 TOP2AP11388 1531 aaKnown RBP28.86■■■□□ 2.21
SF3A3-203ENST00000461869 OSCARQ8IYS5 282 aa28.79■■■□□ 2.2
SF3A3-203ENST00000461869 URB2Q14146 1524 aaKnown RBP28.78■■■□□ 2.2
SF3A3-203ENST00000461869 CCDC88BA6NC98 1476 aa28.57■■■□□ 2.16
SF3A3-203ENST00000461869 PRDM2Q13029 1718 aa28.56■■■□□ 2.16
SF3A3-203ENST00000461869 IFT140Q96RY7 1462 aa28.5■■■□□ 2.15
SF3A3-203ENST00000461869 ZNF608Q9ULD9 1512 aaPredicted RBP28.48■■■□□ 2.15
SF3A3-203ENST00000461869 TOPBP1Q92547 1522 aa28.43■■■□□ 2.14
SF3A3-203ENST00000461869 ABCC8Q09428 1581 aa28.37■■■□□ 2.13
SF3A3-203ENST00000461869 RIMBP3CA6NJZ7 1639 aa28.36■■■□□ 2.13
SF3A3-203ENST00000461869 RIMBP3BA6NNM3 1639 aa28.36■■■□□ 2.13
SF3A3-203ENST00000461869 RIMBP3Q9UFD9 1639 aa28.36■■■□□ 2.13
SF3A3-203ENST00000461869 DNMBPQ6XZF7 1577 aa28.28■■■□□ 2.12
SF3A3-203ENST00000461869 EIF4G3O43432 1585 aaKnown RBP28.28■■■□□ 2.12
SF3A3-203ENST00000461869 ARHGEF11O15085 1522 aa28.26■■■□□ 2.11
SF3A3-203ENST00000461869 AQRO60306 1485 aaKnown RBP eCLIP28.21■■■□□ 2.115e-7■■■■■ 33.6
SF3A3-203ENST00000461869 TARBP1Q13395 1621 aaKnown RBP28.17■■■□□ 2.1
SF3A3-203ENST00000461869 CYB5RLQ6IPT4 315 aa28.14■■■□□ 2.1
SF3A3-203ENST00000461869 FBLN2P98095 1184 aa28.12■■■□□ 2.09
SF3A3-203ENST00000461869 POLA1P09884 1462 aaPredicted RBP28.12■■■□□ 2.09
SF3A3-203ENST00000461869 CHD1O14646 1710 aa28.09■■■□□ 2.09
SF3A3-203ENST00000461869 RAD54L2Q9Y4B4 1467 aa28.04■■■□□ 2.08
SF3A3-203ENST00000461869 SOGA1O94964 1423 aa28.03■■■□□ 2.08
SF3A3-203ENST00000461869 TDRD9Q8NDG6 1382 aaKnown RBP28.01■■■□□ 2.07
SF3A3-203ENST00000461869 ARAP1Q96P48 1450 aa27.97■■■□□ 2.07
SF3A3-203ENST00000461869 FGD5Q6ZNL6 1462 aa27.92■■■□□ 2.06
SF3A3-203ENST00000461869 TRHP20396 242 aaPredicted RBP27.92■■■□□ 2.06
SF3A3-203ENST00000461869 SNAPC4Q5SXM2 1469 aa27.89■■■□□ 2.06
SF3A3-203ENST00000461869 CHMP7Q8WUX9 453 aaPredicted RBP27.87■■■□□ 2.05
SF3A3-203ENST00000461869 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
SF3A3-203ENST00000461869 CUX1P39880 1505 aa27.85■■■□□ 2.05
SF3A3-203ENST00000461869 MAGI1Q96QZ7 1491 aaPredicted RBP27.81■■■□□ 2.04
SF3A3-203ENST00000461869 GRIN2BQ13224 1484 aa27.79■■■□□ 2.04
SF3A3-203ENST00000461869 CLASP1Q7Z460 1538 aa27.78■■■□□ 2.04
SF3A3-203ENST00000461869 SYNJ1O43426 1573 aa27.77■■■□□ 2.04
SF3A3-203ENST00000461869 SYNJ2O15056 1496 aa27.72■■■□□ 2.03
SF3A3-203ENST00000461869 GAPVD1Q14C86 1478 aa27.66■■■□□ 2.02
SF3A3-203ENST00000461869 PBRM1Q86U86 1689 aa27.61■■■□□ 2.01
SF3A3-203ENST00000461869 ABCA10Q8WWZ4 1543 aa27.58■■■□□ 2.01
SF3A3-203ENST00000461869 SUPT5HO00267 1087 aaKnown RBP27.54■■■□□ 2
SF3A3-203ENST00000461869 ABCA5Q8WWZ7 1642 aa27.53■■■□□ 2
SF3A3-203ENST00000461869 WRNQ14191 1432 aaPredicted RBP eCLIP27.45■■□□□ 1.98
SF3A3-203ENST00000461869 GRIN2AQ12879 1464 aa27.42■■□□□ 1.98
SF3A3-203ENST00000461869 ERCC6L2Q5T890 1561 aa27.35■■□□□ 1.97
SF3A3-203ENST00000461869 ADAMTS12P58397 1594 aa27.35■■□□□ 1.97
SF3A3-203ENST00000461869 NUP160Q12769 1436 aa27.33■■□□□ 1.97
SF3A3-203ENST00000461869 CEP170Q5SW79 1584 aa27.32■■□□□ 1.96
SF3A3-203ENST00000461869 TOP2BQ02880 1626 aa27.32■■□□□ 1.96
SF3A3-203ENST00000461869 FHAD1B1AJZ9 1412 aa27.31■■□□□ 1.96
SF3A3-203ENST00000461869 BIVM-ERCC5R4GMW8 1640 aa27.3■■□□□ 1.96
SF3A3-203ENST00000461869 AEBP2Q6ZN18 517 aaPredicted RBP27.29■■□□□ 1.96
SF3A3-203ENST00000461869 ERICH3Q5RHP9 1530 aa27.22■■□□□ 1.95
SF3A3-203ENST00000461869 SHROOM2Q13796 1616 aa27.21■■□□□ 1.95
SF3A3-203ENST00000461869 PRG4Q92954 1404 aaPredicted RBP27.13■■□□□ 1.93
SF3A3-203ENST00000461869 JPH4Q96JJ6 628 aa27.12■■□□□ 1.93
SF3A3-203ENST00000461869 RUSC2Q8N2Y8 1516 aa26.97■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms