RNA–Protein interactions for RNA: ENST00000461708.1

SSB-206, Transcript of Sjogren syndrome antigen B, humanhuman

TSL 2

Gene SSB, Length 619 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSB-206ENST00000461708 NISCHQ9Y2I1 1504 aa44.73■■■■■ 4.75
SSB-206ENST00000461708 CCDC180Q9P1Z9 1646 aa40.13■■■■■ 4.02
SSB-206ENST00000461708 ABCC9O60706 1549 aa39.89■■■■□ 3.98
SSB-206ENST00000461708 RB1CC1Q8TDY2 1594 aa38.13■■■■□ 3.69
SSB-206ENST00000461708 NACADO15069 1562 aa37.93■■■■□ 3.66
SSB-206ENST00000461708 DCAF8L2P0C7V8 631 aa37.55■■■■□ 3.6
SSB-206ENST00000461708 MYO15BQ96JP2 1530 aa37.51■■■■□ 3.6
SSB-206ENST00000461708 DNAJC5BQ9UF47 199 aa37.33■■■■□ 3.57
SSB-206ENST00000461708 UNC13AQ9UPW8 1703 aa37.21■■■■□ 3.55
SSB-206ENST00000461708 PABPN1Q86U42 306 aaKnown RBP eCLIP37.13■■■■□ 3.53
SSB-206ENST00000461708 ZCCHC6Q5VYS8 1495 aaKnown RBP37.09■■■■□ 3.53
SSB-206ENST00000461708 DCAF1Q9Y4B6 1507 aa37.05■■■■□ 3.52
SSB-206ENST00000461708 BICRAQ9NZM4 1560 aa36.99■■■■□ 3.51
SSB-206ENST00000461708 SHROOM4Q9ULL8 1493 aa36.64■■■■□ 3.46
SSB-206ENST00000461708 SCRIBQ14160 1630 aa36.44■■■■□ 3.42
SSB-206ENST00000461708 CC2D2AQ9P2K1 1620 aa36.09■■■■□ 3.37
SSB-206ENST00000461708 EIF4G1Q04637 1599 aaKnown RBP36.06■■■■□ 3.36
SSB-206ENST00000461708 CECR2Q9BXF3 1484 aa35.98■■■■□ 3.35
SSB-206ENST00000461708 NCAPD3P42695 1498 aa35.01■■■■□ 3.19
SSB-206ENST00000461708 ATAD2BQ9ULI0 1458 aa34.87■■■■□ 3.17
SSB-206ENST00000461708 SMARCA4P51532 1647 aa34.85■■■■□ 3.17
SSB-206ENST00000461708 SMARCA2P51531 1590 aa34.82■■■■□ 3.16
SSB-206ENST00000461708 HMGXB3Q12766 1538 aa34.76■■■■□ 3.15
SSB-206ENST00000461708 BAZ1AQ9NRL2 1556 aaPredicted RBP34.73■■■■□ 3.15
SSB-206ENST00000461708 PEG3Q9GZU2 1588 aa34.59■■■■□ 3.13
SSB-206ENST00000461708 BAZ1BQ9UIG0 1483 aaKnown RBP34.52■■■■□ 3.12
SSB-206ENST00000461708 ERCC6Q03468 1493 aa34.46■■■■□ 3.11
SSB-206ENST00000461708 CUX2O14529 1486 aa34.46■■■■□ 3.11
SSB-206ENST00000461708 MROH2BQ7Z745 1585 aa34.41■■■■□ 3.1
SSB-206ENST00000461708 NESP48681 1621 aa34.3■■■■□ 3.08
SSB-206ENST00000461708 DNAJC5Q9H3Z4 198 aa34.29■■■■□ 3.08
SSB-206ENST00000461708 LAMC3Q9Y6N6 1575 aa34.19■■■■□ 3.06
SSB-206ENST00000461708 WIZO95785 1651 aa33.99■■■■□ 3.03
SSB-206ENST00000461708 THOC2Q8NI27 1593 aaKnown RBP33.98■■■■□ 3.03
SSB-206ENST00000461708 PDS5BQ9NTI5 1447 aa33.98■■■■□ 3.03
SSB-206ENST00000461708 CADPSQ9ULU8 1353 aa33.92■■■■□ 3.02
SSB-206ENST00000461708 KIF21AQ7Z4S6 1674 aa33.88■■■■□ 3.01
SSB-206ENST00000461708 RSF1Q96T23 1441 aaPredicted RBP33.78■■■■□ 3
SSB-206ENST00000461708 MRC2Q9UBG0 1479 aa33.65■■■□□ 2.98
SSB-206ENST00000461708 TOP2AP11388 1531 aaKnown RBP33.63■■■□□ 2.97
SSB-206ENST00000461708 WDR62O43379 1518 aa33.58■■■□□ 2.97
SSB-206ENST00000461708 CFTRP13569 1480 aa33.56■■■□□ 2.96
SSB-206ENST00000461708 CEP164Q9UPV0 1460 aa33.53■■■□□ 2.96
SSB-206ENST00000461708 FANCD2Q9BXW9 1451 aa33.5■■■□□ 2.95
SSB-206ENST00000461708 PRDM2Q13029 1718 aa33.23■■■□□ 2.91
SSB-206ENST00000461708 CCDC88BA6NC98 1476 aa33.22■■■□□ 2.91
SSB-206ENST00000461708 URB2Q14146 1524 aaKnown RBP33.21■■■□□ 2.91
SSB-206ENST00000461708 ABCC8Q09428 1581 aa32.91■■■□□ 2.86
SSB-206ENST00000461708 IFT140Q96RY7 1462 aa32.89■■■□□ 2.86
SSB-206ENST00000461708 TOPBP1Q92547 1522 aa32.88■■■□□ 2.85
SSB-206ENST00000461708 OSCARQ8IYS5 282 aa32.87■■■□□ 2.85
SSB-206ENST00000461708 DNMBPQ6XZF7 1577 aa32.79■■■□□ 2.84
SSB-206ENST00000461708 ZNF608Q9ULD9 1512 aaPredicted RBP32.75■■■□□ 2.83
SSB-206ENST00000461708 TRIM41Q8WV44 630 aa32.69■■■□□ 2.82
SSB-206ENST00000461708 TARBP1Q13395 1621 aaKnown RBP32.6■■■□□ 2.81
SSB-206ENST00000461708 EIF4G3O43432 1585 aaKnown RBP32.6■■■□□ 2.81
SSB-206ENST00000461708 POLA1P09884 1462 aaPredicted RBP32.54■■■□□ 2.8
SSB-206ENST00000461708 AQRO60306 1485 aaKnown RBP eCLIP32.47■■■□□ 2.796e-9■■■■■ 32.8
SSB-206ENST00000461708 SOGA1O94964 1423 aa32.4■■■□□ 2.78
SSB-206ENST00000461708 RIMBP3CA6NJZ7 1639 aa32.38■■■□□ 2.77
SSB-206ENST00000461708 RIMBP3BA6NNM3 1639 aa32.38■■■□□ 2.77
SSB-206ENST00000461708 RIMBP3Q9UFD9 1639 aa32.38■■■□□ 2.77
SSB-206ENST00000461708 RAD54L2Q9Y4B4 1467 aa32.38■■■□□ 2.77
SSB-206ENST00000461708 WDR97A6NE52 1622 aa32.37■■■□□ 2.77
SSB-206ENST00000461708 FGD5Q6ZNL6 1462 aa32.35■■■□□ 2.77
SSB-206ENST00000461708 CUX1P39880 1505 aa32.34■■■□□ 2.77
SSB-206ENST00000461708 CHD1O14646 1710 aa32.32■■■□□ 2.76
SSB-206ENST00000461708 ARHGEF11O15085 1522 aa32.31■■■□□ 2.76
SSB-206ENST00000461708 TDRD9Q8NDG6 1382 aaKnown RBP32.29■■■□□ 2.76
SSB-206ENST00000461708 SUPT5HO00267 1087 aaKnown RBP32.24■■■□□ 2.75
SSB-206ENST00000461708 FBLN2P98095 1184 aa32.19■■■□□ 2.74
SSB-206ENST00000461708 SNAPC4Q5SXM2 1469 aa32.15■■■□□ 2.74
SSB-206ENST00000461708 MAGI1Q96QZ7 1491 aaPredicted RBP32.15■■■□□ 2.74
SSB-206ENST00000461708 GRIN2BQ13224 1484 aa32.14■■■□□ 2.74
SSB-206ENST00000461708 CHMP7Q8WUX9 453 aaPredicted RBP32.04■■■□□ 2.72
SSB-206ENST00000461708 ABCA10Q8WWZ4 1543 aa32.04■■■□□ 2.72
SSB-206ENST00000461708 SYNJ2O15056 1496 aa32.03■■■□□ 2.72
SSB-206ENST00000461708 GAPVD1Q14C86 1478 aa32.03■■■□□ 2.72
SSB-206ENST00000461708 CYB5RLQ6IPT4 315 aa32.02■■■□□ 2.72
SSB-206ENST00000461708 CLASP1Q7Z460 1538 aa32■■■□□ 2.71
SSB-206ENST00000461708 SYNJ1O43426 1573 aa31.99■■■□□ 2.71
SSB-206ENST00000461708 ARAP1Q96P48 1450 aa31.98■■■□□ 2.71
SSB-206ENST00000461708 PBRM1Q86U86 1689 aa31.97■■■□□ 2.71
SSB-206ENST00000461708 ABCA5Q8WWZ7 1642 aa31.96■■■□□ 2.71
SSB-206ENST00000461708 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
SSB-206ENST00000461708 TOP2BQ02880 1626 aa31.89■■■□□ 2.7
SSB-206ENST00000461708 BIVM-ERCC5R4GMW8 1640 aa31.89■■■□□ 2.7
SSB-206ENST00000461708 GRIN2AQ12879 1464 aa31.72■■■□□ 2.67
SSB-206ENST00000461708 ADAMTS12P58397 1594 aa31.69■■■□□ 2.66
SSB-206ENST00000461708 ERICH3Q5RHP9 1530 aa31.65■■■□□ 2.66
SSB-206ENST00000461708 FHAD1B1AJZ9 1412 aa31.65■■■□□ 2.66
SSB-206ENST00000461708 NUP160Q12769 1436 aa31.63■■■□□ 2.65
SSB-206ENST00000461708 TRHP20396 242 aaPredicted RBP31.6■■■□□ 2.65
SSB-206ENST00000461708 CEP170Q5SW79 1584 aa31.56■■■□□ 2.64
SSB-206ENST00000461708 SHROOM2Q13796 1616 aa31.48■■■□□ 2.63
SSB-206ENST00000461708 ERCC6L2Q5T890 1561 aa31.43■■■□□ 2.62
SSB-206ENST00000461708 KIF27Q86VH2 1401 aa31.27■■■□□ 2.6
SSB-206ENST00000461708 PRG4Q92954 1404 aaPredicted RBP31.27■■■□□ 2.6
SSB-206ENST00000461708 JPH4Q96JJ6 628 aa31.27■■■□□ 2.6
SSB-206ENST00000461708 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms