RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 NISCHQ9Y2I1 1504 aa36.99■■■■□ 3.51
SMPD4-216ENST00000461187 CCDC180Q9P1Z9 1646 aa33.27■■■□□ 2.92
SMPD4-216ENST00000461187 ABCC9O60706 1549 aa33.12■■■□□ 2.89
SMPD4-216ENST00000461187 RB1CC1Q8TDY2 1594 aa31.59■■■□□ 2.65
SMPD4-216ENST00000461187 NACADO15069 1562 aa31.38■■■□□ 2.61
SMPD4-216ENST00000461187 DCAF8L2P0C7V8 631 aa31.11■■■□□ 2.57
SMPD4-216ENST00000461187 UNC13AQ9UPW8 1703 aa31.07■■■□□ 2.56
SMPD4-216ENST00000461187 DNAJC5BQ9UF47 199 aa31.04■■■□□ 2.56
SMPD4-216ENST00000461187 MYO15BQ96JP2 1530 aa30.94■■■□□ 2.54
SMPD4-216ENST00000461187 PABPN1Q86U42 306 aaKnown RBP eCLIP30.8■■■□□ 2.524e-6■□□□□ 9.3
SMPD4-216ENST00000461187 BICRAQ9NZM4 1560 aa30.71■■■□□ 2.51
SMPD4-216ENST00000461187 ZCCHC6Q5VYS8 1495 aaKnown RBP30.66■■■□□ 2.5
SMPD4-216ENST00000461187 DCAF1Q9Y4B6 1507 aa30.57■■■□□ 2.48
SMPD4-216ENST00000461187 SCRIBQ14160 1630 aa30.26■■■□□ 2.44
SMPD4-216ENST00000461187 SHROOM4Q9ULL8 1493 aa30.23■■■□□ 2.43
SMPD4-216ENST00000461187 CC2D2AQ9P2K1 1620 aa30■■■□□ 2.39
SMPD4-216ENST00000461187 EIF4G1Q04637 1599 aaKnown RBP29.91■■■□□ 2.38
SMPD4-216ENST00000461187 CECR2Q9BXF3 1484 aa29.83■■■□□ 2.37
SMPD4-216ENST00000461187 NCAPD3P42695 1498 aa28.93■■■□□ 2.22
SMPD4-216ENST00000461187 SMARCA4P51532 1647 aa28.89■■■□□ 2.22
SMPD4-216ENST00000461187 ATAD2BQ9ULI0 1458 aa28.85■■■□□ 2.21
SMPD4-216ENST00000461187 SMARCA2P51531 1590 aa28.79■■■□□ 2.2
SMPD4-216ENST00000461187 HMGXB3Q12766 1538 aa28.75■■■□□ 2.19
SMPD4-216ENST00000461187 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
SMPD4-216ENST00000461187 PEG3Q9GZU2 1588 aa28.61■■■□□ 2.17
SMPD4-216ENST00000461187 ERCC6Q03468 1493 aa28.58■■■□□ 2.17
SMPD4-216ENST00000461187 BAZ1BQ9UIG0 1483 aaKnown RBP28.57■■■□□ 2.16
SMPD4-216ENST00000461187 CUX2O14529 1486 aa28.54■■■□□ 2.16
SMPD4-216ENST00000461187 MROH2BQ7Z745 1585 aa28.51■■■□□ 2.15
SMPD4-216ENST00000461187 NESP48681 1621 aa28.49■■■□□ 2.15
SMPD4-216ENST00000461187 DNAJC5Q9H3Z4 198 aa28.46■■■□□ 2.15
SMPD4-216ENST00000461187 LAMC3Q9Y6N6 1575 aa28.32■■■□□ 2.12
SMPD4-216ENST00000461187 THOC2Q8NI27 1593 aaKnown RBP28.25■■■□□ 2.11
SMPD4-216ENST00000461187 WIZO95785 1651 aa28.23■■■□□ 2.11
SMPD4-216ENST00000461187 KIF21AQ7Z4S6 1674 aa28.23■■■□□ 2.11
SMPD4-216ENST00000461187 PDS5BQ9NTI5 1447 aa28.09■■■□□ 2.09
SMPD4-216ENST00000461187 CADPSQ9ULU8 1353 aa28.03■■■□□ 2.08
SMPD4-216ENST00000461187 RSF1Q96T23 1441 aaPredicted RBP27.89■■■□□ 2.06
SMPD4-216ENST00000461187 MRC2Q9UBG0 1479 aa27.87■■■□□ 2.05
SMPD4-216ENST00000461187 WDR62O43379 1518 aa27.83■■■□□ 2.05
SMPD4-216ENST00000461187 TOP2AP11388 1531 aaKnown RBP27.82■■■□□ 2.04
SMPD4-216ENST00000461187 CEP164Q9UPV0 1460 aa27.76■■■□□ 2.04
SMPD4-216ENST00000461187 CFTRP13569 1480 aa27.75■■■□□ 2.03
SMPD4-216ENST00000461187 FANCD2Q9BXW9 1451 aa27.73■■■□□ 2.03
SMPD4-216ENST00000461187 PRDM2Q13029 1718 aa27.68■■■□□ 2.02
SMPD4-216ENST00000461187 URB2Q14146 1524 aaKnown RBP27.53■■■□□ 2
SMPD4-216ENST00000461187 CCDC88BA6NC98 1476 aa27.48■■□□□ 1.99
SMPD4-216ENST00000461187 TOPBP1Q92547 1522 aa27.23■■□□□ 1.95
SMPD4-216ENST00000461187 OSCARQ8IYS5 282 aa27.2■■□□□ 1.94
SMPD4-216ENST00000461187 TRIM41Q8WV44 630 aa27.2■■□□□ 1.94
SMPD4-216ENST00000461187 IFT140Q96RY7 1462 aa27.19■■□□□ 1.94
SMPD4-216ENST00000461187 ZNF608Q9ULD9 1512 aaPredicted RBP27.17■■□□□ 1.94
SMPD4-216ENST00000461187 ABCC8Q09428 1581 aa27.16■■□□□ 1.94
SMPD4-216ENST00000461187 DNMBPQ6XZF7 1577 aa27.15■■□□□ 1.94
SMPD4-216ENST00000461187 EIF4G3O43432 1585 aaKnown RBP27.07■■□□□ 1.92
SMPD4-216ENST00000461187 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
SMPD4-216ENST00000461187 RIMBP3CA6NJZ7 1639 aa26.96■■□□□ 1.91
SMPD4-216ENST00000461187 RIMBP3BA6NNM3 1639 aa26.96■■□□□ 1.91
SMPD4-216ENST00000461187 RIMBP3Q9UFD9 1639 aa26.96■■□□□ 1.91
SMPD4-216ENST00000461187 POLA1P09884 1462 aaPredicted RBP26.95■■□□□ 1.91
SMPD4-216ENST00000461187 CHD1O14646 1710 aa26.95■■□□□ 1.9
SMPD4-216ENST00000461187 AQRO60306 1485 aaKnown RBP eCLIP26.91■■□□□ 1.97e-8■■■■□ 24.7
SMPD4-216ENST00000461187 RAD54L2Q9Y4B4 1467 aa26.84■■□□□ 1.89
SMPD4-216ENST00000461187 ARHGEF11O15085 1522 aa26.82■■□□□ 1.88
SMPD4-216ENST00000461187 SOGA1O94964 1423 aa26.8■■□□□ 1.88
SMPD4-216ENST00000461187 CUX1P39880 1505 aa26.79■■□□□ 1.88
SMPD4-216ENST00000461187 FGD5Q6ZNL6 1462 aa26.78■■□□□ 1.88
SMPD4-216ENST00000461187 WDR97A6NE52 1622 aa26.76■■□□□ 1.87
SMPD4-216ENST00000461187 TDRD9Q8NDG6 1382 aaKnown RBP26.73■■□□□ 1.87
SMPD4-216ENST00000461187 FBLN2P98095 1184 aa26.67■■□□□ 1.86
SMPD4-216ENST00000461187 SNAPC4Q5SXM2 1469 aa26.65■■□□□ 1.86
SMPD4-216ENST00000461187 SUPT5HO00267 1087 aaKnown RBP26.63■■□□□ 1.85
SMPD4-216ENST00000461187 PBRM1Q86U86 1689 aa26.61■■□□□ 1.85
SMPD4-216ENST00000461187 MAGI1Q96QZ7 1491 aaPredicted RBP26.58■■□□□ 1.85
SMPD4-216ENST00000461187 GRIN2BQ13224 1484 aa26.57■■□□□ 1.84
SMPD4-216ENST00000461187 CYB5RLQ6IPT4 315 aa26.56■■□□□ 1.84
SMPD4-216ENST00000461187 ARAP1Q96P48 1450 aa26.55■■□□□ 1.84
SMPD4-216ENST00000461187 CLASP1Q7Z460 1538 aa26.55■■□□□ 1.84
SMPD4-216ENST00000461187 SYNJ1O43426 1573 aa26.51■■□□□ 1.83
SMPD4-216ENST00000461187 ABCA5Q8WWZ7 1642 aa26.5■■□□□ 1.83
SMPD4-216ENST00000461187 GAPVD1Q14C86 1478 aa26.49■■□□□ 1.83
SMPD4-216ENST00000461187 CHMP7Q8WUX9 453 aaPredicted RBP26.49■■□□□ 1.83
SMPD4-216ENST00000461187 ABCA10Q8WWZ4 1543 aa26.49■■□□□ 1.83
SMPD4-216ENST00000461187 SYNJ2O15056 1496 aa26.49■■□□□ 1.83
SMPD4-216ENST00000461187 BIVM-ERCC5R4GMW8 1640 aa26.43■■□□□ 1.82
SMPD4-216ENST00000461187 TOP2BQ02880 1626 aa26.39■■□□□ 1.82
SMPD4-216ENST00000461187 WRNQ14191 1432 aaPredicted RBP eCLIP26.34■■□□□ 1.81
SMPD4-216ENST00000461187 ADAMTS12P58397 1594 aa26.28■■□□□ 1.8
SMPD4-216ENST00000461187 GRIN2AQ12879 1464 aa26.24■■□□□ 1.79
SMPD4-216ENST00000461187 TRHP20396 242 aaPredicted RBP26.23■■□□□ 1.79
SMPD4-216ENST00000461187 CEP170Q5SW79 1584 aa26.19■■□□□ 1.78
SMPD4-216ENST00000461187 ERICH3Q5RHP9 1530 aa26.17■■□□□ 1.78
SMPD4-216ENST00000461187 NUP160Q12769 1436 aa26.15■■□□□ 1.78
SMPD4-216ENST00000461187 ERCC6L2Q5T890 1561 aa26.14■■□□□ 1.78
SMPD4-216ENST00000461187 FHAD1B1AJZ9 1412 aa26.14■■□□□ 1.77
SMPD4-216ENST00000461187 SHROOM2Q13796 1616 aa26.11■■□□□ 1.77
SMPD4-216ENST00000461187 RUSC2Q8N2Y8 1516 aa25.91■■□□□ 1.74
SMPD4-216ENST00000461187 PRG4Q92954 1404 aaPredicted RBP25.87■■□□□ 1.73
SMPD4-216ENST00000461187 JPH4Q96JJ6 628 aa25.85■■□□□ 1.73
SMPD4-216ENST00000461187 CUL7Q14999 1698 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms