RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 NISCHQ9Y2I1 1504 aa23.19■■□□□ 1.3
HERC4-207ENST00000460168 CCDC180Q9P1Z9 1646 aa20.22■□□□□ 0.83
HERC4-207ENST00000460168 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
HERC4-207ENST00000460168 DCAF8L2P0C7V8 631 aa19.26■□□□□ 0.67
HERC4-207ENST00000460168 ABCC9O60706 1549 aa19.18■□□□□ 0.66
HERC4-207ENST00000460168 DCAF1Q9Y4B6 1507 aa19.14■□□□□ 0.66
HERC4-207ENST00000460168 SHROOM4Q9ULL8 1493 aa18.98■□□□□ 0.63
HERC4-207ENST00000460168 MYO15BQ96JP2 1530 aa18.92■□□□□ 0.62
HERC4-207ENST00000460168 NACADO15069 1562 aa18.84■□□□□ 0.61
HERC4-207ENST00000460168 RB1CC1Q8TDY2 1594 aa18.7■□□□□ 0.58
HERC4-207ENST00000460168 SCRIBQ14160 1630 aa18.64■□□□□ 0.57
HERC4-207ENST00000460168 UNC13AQ9UPW8 1703 aa18.31■□□□□ 0.52
HERC4-207ENST00000460168 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
HERC4-207ENST00000460168 BICRAQ9NZM4 1560 aa18.11■□□□□ 0.49
HERC4-207ENST00000460168 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
HERC4-207ENST00000460168 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
HERC4-207ENST00000460168 RSF1Q96T23 1441 aaPredicted RBP17.99■□□□□ 0.47
HERC4-207ENST00000460168 MROH2BQ7Z745 1585 aa17.92■□□□□ 0.46
HERC4-207ENST00000460168 BAZ1AQ9NRL2 1556 aaPredicted RBP17.92■□□□□ 0.46
HERC4-207ENST00000460168 PELP1Q8IZL8 1130 aaKnown RBP17.91■□□□□ 0.46
HERC4-207ENST00000460168 SMARCA4P51532 1647 aa17.84■□□□□ 0.45
HERC4-207ENST00000460168 MYT1Q01538 1121 aa17.82■□□□□ 0.44
HERC4-207ENST00000460168 WIZO95785 1651 aa17.79■□□□□ 0.44
HERC4-207ENST00000460168 EIF4G1Q04637 1599 aaKnown RBP17.6■□□□□ 0.41
HERC4-207ENST00000460168 PEG3Q9GZU2 1588 aa17.6■□□□□ 0.41
HERC4-207ENST00000460168 TOP2AP11388 1531 aaKnown RBP17.58■□□□□ 0.41
HERC4-207ENST00000460168 SMARCA2P51531 1590 aa17.55■□□□□ 0.4
HERC4-207ENST00000460168 ATAD2BQ9ULI0 1458 aa17.54■□□□□ 0.4
HERC4-207ENST00000460168 BAZ1BQ9UIG0 1483 aaKnown RBP17.48■□□□□ 0.39
HERC4-207ENST00000460168 CHIC1Q5VXU3 224 aa17.41■□□□□ 0.38
HERC4-207ENST00000460168 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
HERC4-207ENST00000460168 NCAPD3P42695 1498 aa17.38■□□□□ 0.37
HERC4-207ENST00000460168 HMGXB3Q12766 1538 aa17.37■□□□□ 0.37
HERC4-207ENST00000460168 TTBK1Q5TCY1 1321 aaPredicted RBP17.34■□□□□ 0.37
HERC4-207ENST00000460168 CC2D2AQ9P2K1 1620 aa17.34■□□□□ 0.37
HERC4-207ENST00000460168 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
HERC4-207ENST00000460168 ABCC8Q09428 1581 aa17.07■□□□□ 0.32
HERC4-207ENST00000460168 CFTRP13569 1480 aa17■□□□□ 0.31
HERC4-207ENST00000460168 CADPSQ9ULU8 1353 aa16.96■□□□□ 0.3
HERC4-207ENST00000460168 WRNQ14191 1432 aaPredicted RBP eCLIP16.96■□□□□ 0.3
HERC4-207ENST00000460168 SLC24A1O60721 1099 aa16.95■□□□□ 0.3
HERC4-207ENST00000460168 PRDM2Q13029 1718 aa16.92■□□□□ 0.3
HERC4-207ENST00000460168 DNAJC5BQ9UF47 199 aa16.9■□□□□ 0.3
HERC4-207ENST00000460168 SYNJ1O43426 1573 aa16.87■□□□□ 0.29
HERC4-207ENST00000460168 FAM9AQ8IZU1 332 aaPredicted RBP16.86■□□□□ 0.29
HERC4-207ENST00000460168 NESP48681 1621 aa16.82■□□□□ 0.28
HERC4-207ENST00000460168 LAMC3Q9Y6N6 1575 aa16.82■□□□□ 0.28
HERC4-207ENST00000460168 TOP2BQ02880 1626 aa16.8■□□□□ 0.28
HERC4-207ENST00000460168 FANCD2Q9BXW9 1451 aa16.78■□□□□ 0.28
HERC4-207ENST00000460168 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
HERC4-207ENST00000460168 LOC105371045A0A1W2PR82 267 aa16.77■□□□□ 0.28
HERC4-207ENST00000460168 PRKCSHP14314 528 aaPredicted RBP16.77■□□□□ 0.28
HERC4-207ENST00000460168 CUX1P39880 1505 aa16.76■□□□□ 0.27
HERC4-207ENST00000460168 SOGA1O94964 1423 aa16.74■□□□□ 0.27
HERC4-207ENST00000460168 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
HERC4-207ENST00000460168 CEP164Q9UPV0 1460 aa16.69■□□□□ 0.26
HERC4-207ENST00000460168 EEA1Q15075 1411 aa16.68■□□□□ 0.26
HERC4-207ENST00000460168 RUSC2Q8N2Y8 1516 aa16.66■□□□□ 0.26
HERC4-207ENST00000460168 EHMT2Q96KQ7 1210 aa16.66■□□□□ 0.26
HERC4-207ENST00000460168 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
HERC4-207ENST00000460168 DNMBPQ6XZF7 1577 aa16.62■□□□□ 0.25
HERC4-207ENST00000460168 CSRNP3Q8WYN3 585 aa16.61■□□□□ 0.25
HERC4-207ENST00000460168 APLP2Q06481 763 aa16.6■□□□□ 0.25
HERC4-207ENST00000460168 FGD5Q6ZNL6 1462 aa16.59■□□□□ 0.25
HERC4-207ENST00000460168 TOPBP1Q92547 1522 aa16.59■□□□□ 0.25
HERC4-207ENST00000460168 URB2Q14146 1524 aaKnown RBP16.55■□□□□ 0.24
HERC4-207ENST00000460168 ERICH6Q7L0X2 663 aa16.55■□□□□ 0.24
HERC4-207ENST00000460168 KIF27Q86VH2 1401 aa16.53■□□□□ 0.24
HERC4-207ENST00000460168 POLA1P09884 1462 aaPredicted RBP16.51■□□□□ 0.23
HERC4-207ENST00000460168 CUX2O14529 1486 aa16.49■□□□□ 0.23
HERC4-207ENST00000460168 ERCC6Q03468 1493 aa16.47■□□□□ 0.23
HERC4-207ENST00000460168 MRC2Q9UBG0 1479 aa16.47■□□□□ 0.23
HERC4-207ENST00000460168 GOLGA3Q08378 1498 aa16.47■□□□□ 0.23
HERC4-207ENST00000460168 RAD54L2Q9Y4B4 1467 aa16.46■□□□□ 0.23
HERC4-207ENST00000460168 KIF21BO75037 1637 aa16.46■□□□□ 0.23
HERC4-207ENST00000460168 UBTFP17480 764 aaKnown RBP16.45■□□□□ 0.22
HERC4-207ENST00000460168 ABCA10Q8WWZ4 1543 aa16.43■□□□□ 0.22
HERC4-207ENST00000460168 TNIKQ9UKE5 1360 aa16.4■□□□□ 0.22
HERC4-207ENST00000460168 RAPGEF2Q9Y4G8 1499 aa16.4■□□□□ 0.22
HERC4-207ENST00000460168 PRXQ9BXM0 1461 aa16.38■□□□□ 0.21
HERC4-207ENST00000460168 WDR62O43379 1518 aa16.38■□□□□ 0.21
HERC4-207ENST00000460168 WDR97A6NE52 1622 aa16.37■□□□□ 0.21
HERC4-207ENST00000460168 ERICH3Q5RHP9 1530 aa16.36■□□□□ 0.21
HERC4-207ENST00000460168 IGF1RP08069 1367 aa16.36■□□□□ 0.21
HERC4-207ENST00000460168 CEP162Q5TB80 1403 aa16.34■□□□□ 0.21
HERC4-207ENST00000460168 THOC2Q8NI27 1593 aaKnown RBP16.33■□□□□ 0.21
HERC4-207ENST00000460168 TARBP1Q13395 1621 aaKnown RBP16.33■□□□□ 0.2
HERC4-207ENST00000460168 TDRD9Q8NDG6 1382 aaKnown RBP16.32■□□□□ 0.2
HERC4-207ENST00000460168 CARMIL1Q5VZK9 1371 aa16.3■□□□□ 0.2
HERC4-207ENST00000460168 ABCA5Q8WWZ7 1642 aa16.29■□□□□ 0.2
HERC4-207ENST00000460168 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
HERC4-207ENST00000460168 IFT140Q96RY7 1462 aa16.27■□□□□ 0.19
HERC4-207ENST00000460168 CUL7Q14999 1698 aa16.25■□□□□ 0.19
HERC4-207ENST00000460168 CLIP1P30622 1438 aa16.22■□□□□ 0.19
HERC4-207ENST00000460168 RANGAP1P46060 587 aaPredicted RBP16.22■□□□□ 0.19
HERC4-207ENST00000460168 AQRO60306 1485 aaKnown RBP eCLIP16.21■□□□□ 0.19
HERC4-207ENST00000460168 PBRM1Q86U86 1689 aa16.19■□□□□ 0.18
HERC4-207ENST00000460168 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
HERC4-207ENST00000460168 GRIN2BQ13224 1484 aa16.15■□□□□ 0.18
HERC4-207ENST00000460168 DAXXQ9UER7 740 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms