RNA–Protein interactions for RNA: ENST00000454233.6

DDX39A-203, Transcript of DExD-box helicase 39A, humanhuman

TSL 3 BASIC

Gene DDX39A, Length 922 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-203ENST00000454233 NISCHQ9Y2I1 1504 aa26.24■■□□□ 1.79
DDX39A-203ENST00000454233 CCDC180Q9P1Z9 1646 aa23.43■■□□□ 1.34
DDX39A-203ENST00000454233 ABCC9O60706 1549 aa23.18■■□□□ 1.3
DDX39A-203ENST00000454233 RB1CC1Q8TDY2 1594 aa22.2■■□□□ 1.14
DDX39A-203ENST00000454233 NACADO15069 1562 aa22.11■■□□□ 1.13
DDX39A-203ENST00000454233 DCAF8L2P0C7V8 631 aa22.09■■□□□ 1.13
DDX39A-203ENST00000454233 MYO15BQ96JP2 1530 aa21.88■■□□□ 1.09
DDX39A-203ENST00000454233 ZCCHC6Q5VYS8 1495 aaKnown RBP21.8■■□□□ 1.08
DDX39A-203ENST00000454233 DCAF1Q9Y4B6 1507 aa21.7■■□□□ 1.06
DDX39A-203ENST00000454233 PABPN1Q86U42 306 aaKnown RBP eCLIP21.63■■□□□ 1.05
DDX39A-203ENST00000454233 UNC13AQ9UPW8 1703 aa21.63■■□□□ 1.05
DDX39A-203ENST00000454233 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
DDX39A-203ENST00000454233 DNAJC5BQ9UF47 199 aa21.46■■□□□ 1.03
DDX39A-203ENST00000454233 SCRIBQ14160 1630 aa21.37■■□□□ 1.01
DDX39A-203ENST00000454233 SHROOM4Q9ULL8 1493 aa21.28■■□□□ 1
DDX39A-203ENST00000454233 EIF4G1Q04637 1599 aaKnown RBP20.96■□□□□ 0.95
DDX39A-203ENST00000454233 CC2D2AQ9P2K1 1620 aa20.93■□□□□ 0.94
DDX39A-203ENST00000454233 CECR2Q9BXF3 1484 aa20.86■□□□□ 0.93
DDX39A-203ENST00000454233 SMARCA4P51532 1647 aa20.41■□□□□ 0.86
DDX39A-203ENST00000454233 NCAPD3P42695 1498 aa20.39■□□□□ 0.85
DDX39A-203ENST00000454233 BAZ1AQ9NRL2 1556 aaPredicted RBP20.37■□□□□ 0.85
DDX39A-203ENST00000454233 ATAD2BQ9ULI0 1458 aa20.37■□□□□ 0.85
DDX39A-203ENST00000454233 SMARCA2P51531 1590 aa20.35■□□□□ 0.85
DDX39A-203ENST00000454233 HMGXB3Q12766 1538 aa20.27■□□□□ 0.83
DDX39A-203ENST00000454233 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
DDX39A-203ENST00000454233 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
DDX39A-203ENST00000454233 PEG3Q9GZU2 1588 aa20.2■□□□□ 0.82
DDX39A-203ENST00000454233 ERCC6Q03468 1493 aa20.03■□□□□ 0.8
DDX39A-203ENST00000454233 WIZO95785 1651 aa19.97■□□□□ 0.79
DDX39A-203ENST00000454233 NESP48681 1621 aa19.97■□□□□ 0.79
DDX39A-203ENST00000454233 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
DDX39A-203ENST00000454233 LAMC3Q9Y6N6 1575 aa19.9■□□□□ 0.78
DDX39A-203ENST00000454233 CUX2O14529 1486 aa19.88■□□□□ 0.77
DDX39A-203ENST00000454233 PDS5BQ9NTI5 1447 aa19.8■□□□□ 0.76
DDX39A-203ENST00000454233 CADPSQ9ULU8 1353 aa19.8■□□□□ 0.76
DDX39A-203ENST00000454233 TOP2AP11388 1531 aaKnown RBP19.76■□□□□ 0.75
DDX39A-203ENST00000454233 KIF21AQ7Z4S6 1674 aa19.71■□□□□ 0.75
DDX39A-203ENST00000454233 THOC2Q8NI27 1593 aaKnown RBP19.7■□□□□ 0.74
DDX39A-203ENST00000454233 CFTRP13569 1480 aa19.61■□□□□ 0.73
DDX39A-203ENST00000454233 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
DDX39A-203ENST00000454233 CEP164Q9UPV0 1460 aa19.58■□□□□ 0.72
DDX39A-203ENST00000454233 FANCD2Q9BXW9 1451 aa19.57■□□□□ 0.72
DDX39A-203ENST00000454233 DNAJC5Q9H3Z4 198 aa19.56■□□□□ 0.72
DDX39A-203ENST00000454233 CCDC88BA6NC98 1476 aa19.54■□□□□ 0.72
DDX39A-203ENST00000454233 WDR62O43379 1518 aa19.51■□□□□ 0.71
DDX39A-203ENST00000454233 PRDM2Q13029 1718 aa19.43■□□□□ 0.7
DDX39A-203ENST00000454233 URB2Q14146 1524 aaKnown RBP19.37■□□□□ 0.69
DDX39A-203ENST00000454233 SUPT5HO00267 1087 aaKnown RBP19.27■□□□□ 0.68
DDX39A-203ENST00000454233 ABCC8Q09428 1581 aa19.23■□□□□ 0.67
DDX39A-203ENST00000454233 TOPBP1Q92547 1522 aa19.22■□□□□ 0.67
DDX39A-203ENST00000454233 IFT140Q96RY7 1462 aa19.18■□□□□ 0.66
DDX39A-203ENST00000454233 DNMBPQ6XZF7 1577 aa19.18■□□□□ 0.66
DDX39A-203ENST00000454233 ZNF608Q9ULD9 1512 aaPredicted RBP19.09■□□□□ 0.65
DDX39A-203ENST00000454233 POLA1P09884 1462 aaPredicted RBP19.04■□□□□ 0.64
DDX39A-203ENST00000454233 OSCARQ8IYS5 282 aa19.04■□□□□ 0.64
DDX39A-203ENST00000454233 TARBP1Q13395 1621 aaKnown RBP19■□□□□ 0.63
DDX39A-203ENST00000454233 EIF4G3O43432 1585 aaKnown RBP19■□□□□ 0.63
DDX39A-203ENST00000454233 SOGA1O94964 1423 aa18.99■□□□□ 0.63
DDX39A-203ENST00000454233 CUX1P39880 1505 aa18.98■□□□□ 0.63
DDX39A-203ENST00000454233 FGD5Q6ZNL6 1462 aa18.97■□□□□ 0.63
DDX39A-203ENST00000454233 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
DDX39A-203ENST00000454233 AQRO60306 1485 aaKnown RBP eCLIP18.96■□□□□ 0.631e-7■■■■■ 30.6
DDX39A-203ENST00000454233 TDRD9Q8NDG6 1382 aaKnown RBP18.9■□□□□ 0.62
DDX39A-203ENST00000454233 WDR97A6NE52 1622 aa18.87■□□□□ 0.61
DDX39A-203ENST00000454233 TRIM41Q8WV44 630 aa18.84■□□□□ 0.61
DDX39A-203ENST00000454233 FBLN2P98095 1184 aa18.83■□□□□ 0.6
DDX39A-203ENST00000454233 CHD1O14646 1710 aa18.8■□□□□ 0.6
DDX39A-203ENST00000454233 WRNQ14191 1432 aaPredicted RBP eCLIP18.8■□□□□ 0.61e-9■■■■■ 51
DDX39A-203ENST00000454233 GRIN2BQ13224 1484 aa18.78■□□□□ 0.6
DDX39A-203ENST00000454233 SNAPC4Q5SXM2 1469 aa18.78■□□□□ 0.6
DDX39A-203ENST00000454233 ABCA10Q8WWZ4 1543 aa18.77■□□□□ 0.6
DDX39A-203ENST00000454233 MAGI1Q96QZ7 1491 aaPredicted RBP18.76■□□□□ 0.59
DDX39A-203ENST00000454233 TOP2BQ02880 1626 aa18.75■□□□□ 0.59
DDX39A-203ENST00000454233 GAPVD1Q14C86 1478 aa18.75■□□□□ 0.59
DDX39A-203ENST00000454233 BIVM-ERCC5R4GMW8 1640 aa18.74■□□□□ 0.59
DDX39A-203ENST00000454233 CHMP7Q8WUX9 453 aaPredicted RBP18.74■□□□□ 0.59
DDX39A-203ENST00000454233 SYNJ1O43426 1573 aa18.72■□□□□ 0.59
DDX39A-203ENST00000454233 RIMBP3CA6NJZ7 1639 aa18.71■□□□□ 0.59
DDX39A-203ENST00000454233 RIMBP3BA6NNM3 1639 aa18.71■□□□□ 0.59
DDX39A-203ENST00000454233 RIMBP3Q9UFD9 1639 aa18.71■□□□□ 0.59
DDX39A-203ENST00000454233 PBRM1Q86U86 1689 aa18.7■□□□□ 0.58
DDX39A-203ENST00000454233 ABCA5Q8WWZ7 1642 aa18.7■□□□□ 0.58
DDX39A-203ENST00000454233 ARHGEF11O15085 1522 aa18.69■□□□□ 0.58
DDX39A-203ENST00000454233 SYNJ2O15056 1496 aa18.69■□□□□ 0.58
DDX39A-203ENST00000454233 CLASP1Q7Z460 1538 aa18.59■□□□□ 0.57
DDX39A-203ENST00000454233 CYB5RLQ6IPT4 315 aa18.57■□□□□ 0.56
DDX39A-203ENST00000454233 ADAMTS12P58397 1594 aa18.55■□□□□ 0.56
DDX39A-203ENST00000454233 ERICH3Q5RHP9 1530 aa18.54■□□□□ 0.56
DDX39A-203ENST00000454233 GRIN2AQ12879 1464 aa18.53■□□□□ 0.56
DDX39A-203ENST00000454233 FHAD1B1AJZ9 1412 aa18.53■□□□□ 0.56
DDX39A-203ENST00000454233 ARAP1Q96P48 1450 aa18.52■□□□□ 0.56
DDX39A-203ENST00000454233 NUP160Q12769 1436 aa18.45■□□□□ 0.54
DDX39A-203ENST00000454233 CEP170Q5SW79 1584 aa18.43■□□□□ 0.54
DDX39A-203ENST00000454233 KIF27Q86VH2 1401 aa18.43■□□□□ 0.54
DDX39A-203ENST00000454233 IGF1RP08069 1367 aa18.36■□□□□ 0.53
DDX39A-203ENST00000454233 CUL7Q14999 1698 aa18.33■□□□□ 0.52
DDX39A-203ENST00000454233 SHROOM2Q13796 1616 aa18.32■□□□□ 0.52
DDX39A-203ENST00000454233 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
DDX39A-203ENST00000454233 ERCC6L2Q5T890 1561 aa18.3■□□□□ 0.52
DDX39A-203ENST00000454233 JPH4Q96JJ6 628 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms