RNA–Protein interactions for RNA: ENST00000453689.5

VPS16-205, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS16, Length 966 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-205ENST00000453689 NISCHQ9Y2I1 1504 aa35.76■■■■□ 3.31
VPS16-205ENST00000453689 CCDC180Q9P1Z9 1646 aa31.92■■■□□ 2.7
VPS16-205ENST00000453689 ABCC9O60706 1549 aa31.14■■■□□ 2.58
VPS16-205ENST00000453689 RB1CC1Q8TDY2 1594 aa29.98■■■□□ 2.39
VPS16-205ENST00000453689 NACADO15069 1562 aa29.93■■■□□ 2.38
VPS16-205ENST00000453689 DCAF8L2P0C7V8 631 aa29.79■■■□□ 2.36
VPS16-205ENST00000453689 ZCCHC6Q5VYS8 1495 aaKnown RBP29.79■■■□□ 2.36
VPS16-205ENST00000453689 MYO15BQ96JP2 1530 aa29.71■■■□□ 2.35
VPS16-205ENST00000453689 DCAF1Q9Y4B6 1507 aa29.58■■■□□ 2.33
VPS16-205ENST00000453689 UNC13AQ9UPW8 1703 aa29.5■■■□□ 2.31
VPS16-205ENST00000453689 BICRAQ9NZM4 1560 aa29.11■■■□□ 2.25
VPS16-205ENST00000453689 SCRIBQ14160 1630 aa29.08■■■□□ 2.25
VPS16-205ENST00000453689 PABPN1Q86U42 306 aaKnown RBP eCLIP29.03■■■□□ 2.24
VPS16-205ENST00000453689 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
VPS16-205ENST00000453689 DNAJC5BQ9UF47 199 aa28.57■■■□□ 2.16
VPS16-205ENST00000453689 EIF4G1Q04637 1599 aaKnown RBP28.32■■■□□ 2.12
VPS16-205ENST00000453689 CC2D2AQ9P2K1 1620 aa28.24■■■□□ 2.11
VPS16-205ENST00000453689 CECR2Q9BXF3 1484 aa27.97■■■□□ 2.07
VPS16-205ENST00000453689 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
VPS16-205ENST00000453689 BAZ1AQ9NRL2 1556 aaPredicted RBP27.73■■■□□ 2.03
VPS16-205ENST00000453689 SMARCA2P51531 1590 aa27.59■■■□□ 2.01
VPS16-205ENST00000453689 ATAD2BQ9ULI0 1458 aa27.58■■■□□ 2.01
VPS16-205ENST00000453689 MROH2BQ7Z745 1585 aa27.57■■■□□ 2
VPS16-205ENST00000453689 NCAPD3P42695 1498 aa27.57■■■□□ 2
VPS16-205ENST00000453689 PEG3Q9GZU2 1588 aa27.52■■■□□ 2
VPS16-205ENST00000453689 HMGXB3Q12766 1538 aa27.49■■□□□ 1.99
VPS16-205ENST00000453689 BAZ1BQ9UIG0 1483 aaKnown RBP27.37■■□□□ 1.97
VPS16-205ENST00000453689 WIZO95785 1651 aa27.34■■□□□ 1.97
VPS16-205ENST00000453689 RSF1Q96T23 1441 aaPredicted RBP27.19■■□□□ 1.94
VPS16-205ENST00000453689 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
VPS16-205ENST00000453689 NESP48681 1621 aa26.97■■□□□ 1.91
VPS16-205ENST00000453689 LAMC3Q9Y6N6 1575 aa26.92■■□□□ 1.9
VPS16-205ENST00000453689 ERCC6Q03468 1493 aa26.83■■□□□ 1.89
VPS16-205ENST00000453689 KIF21AQ7Z4S6 1674 aa26.76■■□□□ 1.87
VPS16-205ENST00000453689 CADPSQ9ULU8 1353 aa26.74■■□□□ 1.87
VPS16-205ENST00000453689 PDS5BQ9NTI5 1447 aa26.65■■□□□ 1.86
VPS16-205ENST00000453689 CCDC88BA6NC98 1476 aa26.64■■□□□ 1.86
VPS16-205ENST00000453689 PRDM2Q13029 1718 aa26.64■■□□□ 1.85
VPS16-205ENST00000453689 THOC2Q8NI27 1593 aaKnown RBP26.63■■□□□ 1.85
VPS16-205ENST00000453689 CFTRP13569 1480 aa26.6■■□□□ 1.85
VPS16-205ENST00000453689 CUX2O14529 1486 aa26.57■■□□□ 1.84
VPS16-205ENST00000453689 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
VPS16-205ENST00000453689 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
VPS16-205ENST00000453689 SUPT5HO00267 1087 aaKnown RBP26.43■■□□□ 1.82
VPS16-205ENST00000453689 MRC2Q9UBG0 1479 aa26.42■■□□□ 1.82
VPS16-205ENST00000453689 WDR62O43379 1518 aa26.36■■□□□ 1.81
VPS16-205ENST00000453689 URB2Q14146 1524 aaKnown RBP26.24■■□□□ 1.79
VPS16-205ENST00000453689 TOPBP1Q92547 1522 aa26.07■■□□□ 1.76
VPS16-205ENST00000453689 DNMBPQ6XZF7 1577 aa26.06■■□□□ 1.76
VPS16-205ENST00000453689 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
VPS16-205ENST00000453689 CUX1P39880 1505 aa25.88■■□□□ 1.73
VPS16-205ENST00000453689 IFT140Q96RY7 1462 aa25.87■■□□□ 1.73
VPS16-205ENST00000453689 TARBP1Q13395 1621 aaKnown RBP25.84■■□□□ 1.73
VPS16-205ENST00000453689 POLA1P09884 1462 aaPredicted RBP25.83■■□□□ 1.73
VPS16-205ENST00000453689 ZNF608Q9ULD9 1512 aaPredicted RBP25.78■■□□□ 1.72
VPS16-205ENST00000453689 FGD5Q6ZNL6 1462 aa25.77■■□□□ 1.72
VPS16-205ENST00000453689 EIF4G3O43432 1585 aaKnown RBP25.76■■□□□ 1.71
VPS16-205ENST00000453689 DNAJC5Q9H3Z4 198 aa25.74■■□□□ 1.71
VPS16-205ENST00000453689 RAD54L2Q9Y4B4 1467 aa25.72■■□□□ 1.71
VPS16-205ENST00000453689 BIVM-ERCC5R4GMW8 1640 aa25.71■■□□□ 1.71
VPS16-205ENST00000453689 WDR97A6NE52 1622 aa25.69■■□□□ 1.7
VPS16-205ENST00000453689 SOGA1O94964 1423 aa25.69■■□□□ 1.7
VPS16-205ENST00000453689 TOP2BQ02880 1626 aa25.66■■□□□ 1.7
VPS16-205ENST00000453689 SYNJ1O43426 1573 aa25.66■■□□□ 1.7
VPS16-205ENST00000453689 WRNQ14191 1432 aaPredicted RBP eCLIP25.63■■□□□ 1.69
VPS16-205ENST00000453689 AQRO60306 1485 aaKnown RBP eCLIP25.61■■□□□ 1.69
VPS16-205ENST00000453689 TDRD9Q8NDG6 1382 aaKnown RBP25.54■■□□□ 1.68
VPS16-205ENST00000453689 PBRM1Q86U86 1689 aa25.53■■□□□ 1.68
VPS16-205ENST00000453689 CHD1O14646 1710 aa25.51■■□□□ 1.68
VPS16-205ENST00000453689 ABCA10Q8WWZ4 1543 aa25.51■■□□□ 1.67
VPS16-205ENST00000453689 ABCA5Q8WWZ7 1642 aa25.48■■□□□ 1.67
VPS16-205ENST00000453689 GAPVD1Q14C86 1478 aa25.41■■□□□ 1.66
VPS16-205ENST00000453689 GRIN2BQ13224 1484 aa25.4■■□□□ 1.66
VPS16-205ENST00000453689 SNAPC4Q5SXM2 1469 aa25.4■■□□□ 1.66
VPS16-205ENST00000453689 OSCARQ8IYS5 282 aa25.39■■□□□ 1.66
VPS16-205ENST00000453689 MAGI1Q96QZ7 1491 aaPredicted RBP25.36■■□□□ 1.65
VPS16-205ENST00000453689 FBLN2P98095 1184 aa25.27■■□□□ 1.64
VPS16-205ENST00000453689 SYNJ2O15056 1496 aa25.26■■□□□ 1.63
VPS16-205ENST00000453689 ADAMTS12P58397 1594 aa25.23■■□□□ 1.63
VPS16-205ENST00000453689 ERICH3Q5RHP9 1530 aa25.22■■□□□ 1.63
VPS16-205ENST00000453689 CHMP7Q8WUX9 453 aaPredicted RBP25.18■■□□□ 1.62
VPS16-205ENST00000453689 RIMBP3CA6NJZ7 1639 aa25.15■■□□□ 1.62
VPS16-205ENST00000453689 RIMBP3BA6NNM3 1639 aa25.15■■□□□ 1.62
VPS16-205ENST00000453689 RIMBP3Q9UFD9 1639 aa25.15■■□□□ 1.62
VPS16-205ENST00000453689 CLASP1Q7Z460 1538 aa25.13■■□□□ 1.61
VPS16-205ENST00000453689 GRIN2AQ12879 1464 aa25.1■■□□□ 1.61
VPS16-205ENST00000453689 FHAD1B1AJZ9 1412 aa25.1■■□□□ 1.61
VPS16-205ENST00000453689 KIF27Q86VH2 1401 aa25.09■■□□□ 1.61
VPS16-205ENST00000453689 ARHGEF11O15085 1522 aa25.07■■□□□ 1.6
VPS16-205ENST00000453689 CUL7Q14999 1698 aa25.05■■□□□ 1.6
VPS16-205ENST00000453689 CEP170Q5SW79 1584 aa25.03■■□□□ 1.6
VPS16-205ENST00000453689 IGF1RP08069 1367 aa24.98■■□□□ 1.59
VPS16-205ENST00000453689 NUP160Q12769 1436 aa24.97■■□□□ 1.59
VPS16-205ENST00000453689 TRIM41Q8WV44 630 aa24.95■■□□□ 1.58
VPS16-205ENST00000453689 RUSC2Q8N2Y8 1516 aa24.91■■□□□ 1.58
VPS16-205ENST00000453689 SHROOM2Q13796 1616 aa24.89■■□□□ 1.57
VPS16-205ENST00000453689 ARAP1Q96P48 1450 aa24.87■■□□□ 1.57
VPS16-205ENST00000453689 CARMIL1Q5VZK9 1371 aa24.83■■□□□ 1.57
VPS16-205ENST00000453689 ERCC6L2Q5T890 1561 aa24.8■■□□□ 1.56
VPS16-205ENST00000453689 CYB5RLQ6IPT4 315 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms