RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 NISCHQ9Y2I1 1504 aa36.29■■■■□ 3.4
LYSMD3-202ENST00000453259 ABCC9O60706 1549 aa32.82■■■□□ 2.84
LYSMD3-202ENST00000453259 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
LYSMD3-202ENST00000453259 RB1CC1Q8TDY2 1594 aa31.29■■■□□ 2.6
LYSMD3-202ENST00000453259 NACADO15069 1562 aa31.05■■■□□ 2.56
LYSMD3-202ENST00000453259 DNAJC5BQ9UF47 199 aa30.93■■■□□ 2.54
LYSMD3-202ENST00000453259 MYO15BQ96JP2 1530 aa30.63■■■□□ 2.49
LYSMD3-202ENST00000453259 DCAF8L2P0C7V8 631 aa30.52■■■□□ 2.48
LYSMD3-202ENST00000453259 UNC13AQ9UPW8 1703 aa30.44■■■□□ 2.46
LYSMD3-202ENST00000453259 PABPN1Q86U42 306 aaKnown RBP eCLIP30.44■■■□□ 2.46
LYSMD3-202ENST00000453259 BICRAQ9NZM4 1560 aa30.29■■■□□ 2.44
LYSMD3-202ENST00000453259 SHROOM4Q9ULL8 1493 aa30.13■■■□□ 2.41
LYSMD3-202ENST00000453259 DCAF1Q9Y4B6 1507 aa30.1■■■□□ 2.41
LYSMD3-202ENST00000453259 ZCCHC6Q5VYS8 1495 aaKnown RBP30.04■■■□□ 2.4
LYSMD3-202ENST00000453259 CC2D2AQ9P2K1 1620 aa29.7■■■□□ 2.34
LYSMD3-202ENST00000453259 CECR2Q9BXF3 1484 aa29.68■■■□□ 2.34
LYSMD3-202ENST00000453259 SCRIBQ14160 1630 aa29.66■■■□□ 2.34
LYSMD3-202ENST00000453259 EIF4G1Q04637 1599 aaKnown RBP29.61■■■□□ 2.33
LYSMD3-202ENST00000453259 DNAJC5Q9H3Z4 198 aa28.76■■■□□ 2.19
LYSMD3-202ENST00000453259 NCAPD3P42695 1498 aa28.64■■■□□ 2.17
LYSMD3-202ENST00000453259 CUX2O14529 1486 aa28.59■■■□□ 2.17
LYSMD3-202ENST00000453259 ATAD2BQ9ULI0 1458 aa28.45■■■□□ 2.14
LYSMD3-202ENST00000453259 ERCC6Q03468 1493 aa28.44■■■□□ 2.14
LYSMD3-202ENST00000453259 SMARCA2P51531 1590 aa28.44■■■□□ 2.14
LYSMD3-202ENST00000453259 HMGXB3Q12766 1538 aa28.43■■■□□ 2.14
LYSMD3-202ENST00000453259 SMARCA4P51532 1647 aa28.36■■■□□ 2.13
LYSMD3-202ENST00000453259 BAZ1AQ9NRL2 1556 aaPredicted RBP28.24■■■□□ 2.11
LYSMD3-202ENST00000453259 PEG3Q9GZU2 1588 aa28.18■■■□□ 2.1
LYSMD3-202ENST00000453259 BAZ1BQ9UIG0 1483 aaKnown RBP28.17■■■□□ 2.1
LYSMD3-202ENST00000453259 NESP48681 1621 aa28.09■■■□□ 2.09
LYSMD3-202ENST00000453259 LAMC3Q9Y6N6 1575 aa28.05■■■□□ 2.08
LYSMD3-202ENST00000453259 THOC2Q8NI27 1593 aaKnown RBP27.98■■■□□ 2.07
LYSMD3-202ENST00000453259 PDS5BQ9NTI5 1447 aa27.89■■■□□ 2.06
LYSMD3-202ENST00000453259 MROH2BQ7Z745 1585 aa27.87■■■□□ 2.05
LYSMD3-202ENST00000453259 KIF21AQ7Z4S6 1674 aa27.77■■■□□ 2.04
LYSMD3-202ENST00000453259 CADPSQ9ULU8 1353 aa27.71■■■□□ 2.03
LYSMD3-202ENST00000453259 MRC2Q9UBG0 1479 aa27.63■■■□□ 2.01
LYSMD3-202ENST00000453259 WDR62O43379 1518 aa27.58■■■□□ 2.01
LYSMD3-202ENST00000453259 WIZO95785 1651 aa27.49■■□□□ 1.99
LYSMD3-202ENST00000453259 CEP164Q9UPV0 1460 aa27.46■■□□□ 1.99
LYSMD3-202ENST00000453259 FANCD2Q9BXW9 1451 aa27.38■■□□□ 1.97
LYSMD3-202ENST00000453259 CFTRP13569 1480 aa27.37■■□□□ 1.97
LYSMD3-202ENST00000453259 TOP2AP11388 1531 aaKnown RBP27.26■■□□□ 1.95
LYSMD3-202ENST00000453259 TRIM41Q8WV44 630 aa27.24■■□□□ 1.95
LYSMD3-202ENST00000453259 RSF1Q96T23 1441 aaPredicted RBP27.24■■□□□ 1.95
LYSMD3-202ENST00000453259 OSCARQ8IYS5 282 aa27.14■■□□□ 1.94
LYSMD3-202ENST00000453259 URB2Q14146 1524 aaKnown RBP27.13■■□□□ 1.93
LYSMD3-202ENST00000453259 PRDM2Q13029 1718 aa27.07■■□□□ 1.92
LYSMD3-202ENST00000453259 IFT140Q96RY7 1462 aa26.94■■□□□ 1.9
LYSMD3-202ENST00000453259 ABCC8Q09428 1581 aa26.88■■□□□ 1.89
LYSMD3-202ENST00000453259 CCDC88BA6NC98 1476 aa26.87■■□□□ 1.89
LYSMD3-202ENST00000453259 TOPBP1Q92547 1522 aa26.82■■□□□ 1.88
LYSMD3-202ENST00000453259 ZNF608Q9ULD9 1512 aaPredicted RBP26.79■■□□□ 1.88
LYSMD3-202ENST00000453259 RIMBP3CA6NJZ7 1639 aa26.78■■□□□ 1.88
LYSMD3-202ENST00000453259 RIMBP3BA6NNM3 1639 aa26.78■■□□□ 1.88
LYSMD3-202ENST00000453259 RIMBP3Q9UFD9 1639 aa26.78■■□□□ 1.88
LYSMD3-202ENST00000453259 DNMBPQ6XZF7 1577 aa26.74■■□□□ 1.87
LYSMD3-202ENST00000453259 EIF4G3O43432 1585 aaKnown RBP26.71■■□□□ 1.87
LYSMD3-202ENST00000453259 ARHGEF11O15085 1522 aa26.7■■□□□ 1.87
LYSMD3-202ENST00000453259 TARBP1Q13395 1621 aaKnown RBP26.61■■□□□ 1.85
LYSMD3-202ENST00000453259 POLA1P09884 1462 aaPredicted RBP26.53■■□□□ 1.84
LYSMD3-202ENST00000453259 AQRO60306 1485 aaKnown RBP eCLIP26.51■■□□□ 1.832e-7■■■□□ 15.3
LYSMD3-202ENST00000453259 CHD1O14646 1710 aa26.51■■□□□ 1.83
LYSMD3-202ENST00000453259 WDR97A6NE52 1622 aa26.5■■□□□ 1.83
LYSMD3-202ENST00000453259 CYB5RLQ6IPT4 315 aa26.42■■□□□ 1.82
LYSMD3-202ENST00000453259 ARAP1Q96P48 1450 aa26.4■■□□□ 1.82
LYSMD3-202ENST00000453259 SOGA1O94964 1423 aa26.39■■□□□ 1.81
LYSMD3-202ENST00000453259 FBLN2P98095 1184 aa26.36■■□□□ 1.81
LYSMD3-202ENST00000453259 RAD54L2Q9Y4B4 1467 aa26.34■■□□□ 1.81
LYSMD3-202ENST00000453259 MAGI1Q96QZ7 1491 aaPredicted RBP26.32■■□□□ 1.8
LYSMD3-202ENST00000453259 TDRD9Q8NDG6 1382 aaKnown RBP26.31■■□□□ 1.8
LYSMD3-202ENST00000453259 FGD5Q6ZNL6 1462 aa26.3■■□□□ 1.8
LYSMD3-202ENST00000453259 SNAPC4Q5SXM2 1469 aa26.29■■□□□ 1.8
LYSMD3-202ENST00000453259 CLASP1Q7Z460 1538 aa26.28■■□□□ 1.8
LYSMD3-202ENST00000453259 SYNJ1O43426 1573 aa26.27■■□□□ 1.8
LYSMD3-202ENST00000453259 GRIN2BQ13224 1484 aa26.25■■□□□ 1.79
LYSMD3-202ENST00000453259 CUX1P39880 1505 aa26.23■■□□□ 1.79
LYSMD3-202ENST00000453259 TRHP20396 242 aaPredicted RBP26.22■■□□□ 1.79
LYSMD3-202ENST00000453259 CHMP7Q8WUX9 453 aaPredicted RBP26.21■■□□□ 1.79
LYSMD3-202ENST00000453259 SYNJ2O15056 1496 aa26.2■■□□□ 1.78
LYSMD3-202ENST00000453259 GAPVD1Q14C86 1478 aa26.09■■□□□ 1.77
LYSMD3-202ENST00000453259 PBRM1Q86U86 1689 aa26.07■■□□□ 1.76
LYSMD3-202ENST00000453259 ABCA10Q8WWZ4 1543 aa26.06■■□□□ 1.76
LYSMD3-202ENST00000453259 ABCA5Q8WWZ7 1642 aa26.03■■□□□ 1.76
LYSMD3-202ENST00000453259 WRNQ14191 1432 aaPredicted RBP eCLIP25.91■■□□□ 1.74
LYSMD3-202ENST00000453259 GRIN2AQ12879 1464 aa25.9■■□□□ 1.74
LYSMD3-202ENST00000453259 ADAMTS12P58397 1594 aa25.84■■□□□ 1.73
LYSMD3-202ENST00000453259 NUP160Q12769 1436 aa25.84■■□□□ 1.73
LYSMD3-202ENST00000453259 TOP2BQ02880 1626 aa25.8■■□□□ 1.72
LYSMD3-202ENST00000453259 BIVM-ERCC5R4GMW8 1640 aa25.8■■□□□ 1.72
LYSMD3-202ENST00000453259 FHAD1B1AJZ9 1412 aa25.79■■□□□ 1.72
LYSMD3-202ENST00000453259 ERICH3Q5RHP9 1530 aa25.76■■□□□ 1.71
LYSMD3-202ENST00000453259 CEP170Q5SW79 1584 aa25.76■■□□□ 1.71
LYSMD3-202ENST00000453259 SHROOM2Q13796 1616 aa25.76■■□□□ 1.71
LYSMD3-202ENST00000453259 ERCC6L2Q5T890 1561 aa25.7■■□□□ 1.71
LYSMD3-202ENST00000453259 AEBP2Q6ZN18 517 aaPredicted RBP25.7■■□□□ 1.7
LYSMD3-202ENST00000453259 SUPT5HO00267 1087 aaKnown RBP25.67■■□□□ 1.7
LYSMD3-202ENST00000453259 PRG4Q92954 1404 aaPredicted RBP25.54■■□□□ 1.68
LYSMD3-202ENST00000453259 JPH4Q96JJ6 628 aa25.5■■□□□ 1.67
LYSMD3-202ENST00000453259 RUSC2Q8N2Y8 1516 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms