RNA–Protein interactions for RNA: ENST00000452226.5

PDLIM2-214, Transcript of PDZ and LIM domain 2, humanhuman

TSL 2

Gene PDLIM2, Length 845 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-214ENST00000452226 NISCHQ9Y2I1 1504 aa45.77■■■■■ 4.92
PDLIM2-214ENST00000452226 CCDC180Q9P1Z9 1646 aa41■■■■■ 4.15
PDLIM2-214ENST00000452226 ABCC9O60706 1549 aa40.85■■■■■ 4.13
PDLIM2-214ENST00000452226 RB1CC1Q8TDY2 1594 aa38.95■■■■□ 3.83
PDLIM2-214ENST00000452226 NACADO15069 1562 aa38.73■■■■□ 3.79
PDLIM2-214ENST00000452226 DCAF8L2P0C7V8 631 aa38.61■■■■□ 3.77
PDLIM2-214ENST00000452226 DNAJC5BQ9UF47 199 aa38.25■■■■□ 3.71
PDLIM2-214ENST00000452226 MYO15BQ96JP2 1530 aa38.22■■■■□ 3.71
PDLIM2-214ENST00000452226 UNC13AQ9UPW8 1703 aa38.11■■■■□ 3.69
PDLIM2-214ENST00000452226 PABPN1Q86U42 306 aaKnown RBP eCLIP38.08■■■■□ 3.69
PDLIM2-214ENST00000452226 ZCCHC6Q5VYS8 1495 aaKnown RBP37.96■■■■□ 3.67
PDLIM2-214ENST00000452226 BICRAQ9NZM4 1560 aa37.81■■■■□ 3.64
PDLIM2-214ENST00000452226 DCAF1Q9Y4B6 1507 aa37.81■■■■□ 3.64
PDLIM2-214ENST00000452226 SCRIBQ14160 1630 aa37.39■■■■□ 3.58
PDLIM2-214ENST00000452226 SHROOM4Q9ULL8 1493 aa37.3■■■■□ 3.56
PDLIM2-214ENST00000452226 CC2D2AQ9P2K1 1620 aa36.92■■■■□ 3.5
PDLIM2-214ENST00000452226 EIF4G1Q04637 1599 aaKnown RBP36.87■■■■□ 3.49
PDLIM2-214ENST00000452226 CECR2Q9BXF3 1484 aa36.78■■■■□ 3.48
PDLIM2-214ENST00000452226 NCAPD3P42695 1498 aa35.74■■■■□ 3.31
PDLIM2-214ENST00000452226 SMARCA4P51532 1647 aa35.68■■■■□ 3.3
PDLIM2-214ENST00000452226 ATAD2BQ9ULI0 1458 aa35.67■■■■□ 3.3
PDLIM2-214ENST00000452226 SMARCA2P51531 1590 aa35.59■■■■□ 3.29
PDLIM2-214ENST00000452226 BAZ1AQ9NRL2 1556 aaPredicted RBP35.52■■■■□ 3.28
PDLIM2-214ENST00000452226 HMGXB3Q12766 1538 aa35.49■■■■□ 3.27
PDLIM2-214ENST00000452226 DNAJC5Q9H3Z4 198 aa35.36■■■■□ 3.25
PDLIM2-214ENST00000452226 BAZ1BQ9UIG0 1483 aaKnown RBP35.34■■■■□ 3.25
PDLIM2-214ENST00000452226 PEG3Q9GZU2 1588 aa35.31■■■■□ 3.24
PDLIM2-214ENST00000452226 MROH2BQ7Z745 1585 aa35.28■■■■□ 3.24
PDLIM2-214ENST00000452226 ERCC6Q03468 1493 aa35.27■■■■□ 3.24
PDLIM2-214ENST00000452226 CUX2O14529 1486 aa35.22■■■■□ 3.23
PDLIM2-214ENST00000452226 NESP48681 1621 aa35.14■■■■□ 3.22
PDLIM2-214ENST00000452226 LAMC3Q9Y6N6 1575 aa34.91■■■■□ 3.18
PDLIM2-214ENST00000452226 WIZO95785 1651 aa34.88■■■■□ 3.17
PDLIM2-214ENST00000452226 THOC2Q8NI27 1593 aaKnown RBP34.74■■■■□ 3.15
PDLIM2-214ENST00000452226 PDS5BQ9NTI5 1447 aa34.72■■■■□ 3.15
PDLIM2-214ENST00000452226 KIF21AQ7Z4S6 1674 aa34.71■■■■□ 3.15
PDLIM2-214ENST00000452226 CADPSQ9ULU8 1353 aa34.67■■■■□ 3.14
PDLIM2-214ENST00000452226 RSF1Q96T23 1441 aaPredicted RBP34.61■■■■□ 3.13
PDLIM2-214ENST00000452226 TOP2AP11388 1531 aaKnown RBP34.43■■■■□ 3.1
PDLIM2-214ENST00000452226 MRC2Q9UBG0 1479 aa34.4■■■■□ 3.1
PDLIM2-214ENST00000452226 CFTRP13569 1480 aa34.31■■■■□ 3.08
PDLIM2-214ENST00000452226 CEP164Q9UPV0 1460 aa34.31■■■■□ 3.08
PDLIM2-214ENST00000452226 WDR62O43379 1518 aa34.3■■■■□ 3.08
PDLIM2-214ENST00000452226 FANCD2Q9BXW9 1451 aa34.28■■■■□ 3.08
PDLIM2-214ENST00000452226 CCDC88BA6NC98 1476 aa34.04■■■■□ 3.04
PDLIM2-214ENST00000452226 PRDM2Q13029 1718 aa34.01■■■■□ 3.04
PDLIM2-214ENST00000452226 URB2Q14146 1524 aaKnown RBP33.99■■■■□ 3.03
PDLIM2-214ENST00000452226 TRIM41Q8WV44 630 aa33.78■■■■□ 3
PDLIM2-214ENST00000452226 OSCARQ8IYS5 282 aa33.67■■■□□ 2.98
PDLIM2-214ENST00000452226 TOPBP1Q92547 1522 aa33.65■■■□□ 2.98
PDLIM2-214ENST00000452226 IFT140Q96RY7 1462 aa33.61■■■□□ 2.97
PDLIM2-214ENST00000452226 ABCC8Q09428 1581 aa33.6■■■□□ 2.97
PDLIM2-214ENST00000452226 DNMBPQ6XZF7 1577 aa33.55■■■□□ 2.96
PDLIM2-214ENST00000452226 ZNF608Q9ULD9 1512 aaPredicted RBP33.54■■■□□ 2.96
PDLIM2-214ENST00000452226 EIF4G3O43432 1585 aaKnown RBP33.36■■■□□ 2.93
PDLIM2-214ENST00000452226 TARBP1Q13395 1621 aaKnown RBP33.35■■■□□ 2.93
PDLIM2-214ENST00000452226 POLA1P09884 1462 aaPredicted RBP33.32■■■□□ 2.92
PDLIM2-214ENST00000452226 AQRO60306 1485 aaKnown RBP eCLIP33.26■■■□□ 2.92
PDLIM2-214ENST00000452226 SUPT5HO00267 1087 aaKnown RBP33.24■■■□□ 2.91
PDLIM2-214ENST00000452226 RAD54L2Q9Y4B4 1467 aa33.2■■■□□ 2.91
PDLIM2-214ENST00000452226 SOGA1O94964 1423 aa33.18■■■□□ 2.9
PDLIM2-214ENST00000452226 CUX1P39880 1505 aa33.13■■■□□ 2.89
PDLIM2-214ENST00000452226 FGD5Q6ZNL6 1462 aa33.13■■■□□ 2.89
PDLIM2-214ENST00000452226 RIMBP3CA6NJZ7 1639 aa33.12■■■□□ 2.89
PDLIM2-214ENST00000452226 RIMBP3BA6NNM3 1639 aa33.12■■■□□ 2.89
PDLIM2-214ENST00000452226 RIMBP3Q9UFD9 1639 aa33.12■■■□□ 2.89
PDLIM2-214ENST00000452226 CHD1O14646 1710 aa33.11■■■□□ 2.89
PDLIM2-214ENST00000452226 TDRD9Q8NDG6 1382 aaKnown RBP33.09■■■□□ 2.89
PDLIM2-214ENST00000452226 FBLN2P98095 1184 aa33.04■■■□□ 2.88
PDLIM2-214ENST00000452226 ARHGEF11O15085 1522 aa33.02■■■□□ 2.88
PDLIM2-214ENST00000452226 WDR97A6NE52 1622 aa33.01■■■□□ 2.87
PDLIM2-214ENST00000452226 SNAPC4Q5SXM2 1469 aa32.93■■■□□ 2.86
PDLIM2-214ENST00000452226 GRIN2BQ13224 1484 aa32.86■■■□□ 2.85
PDLIM2-214ENST00000452226 CYB5RLQ6IPT4 315 aa32.85■■■□□ 2.85
PDLIM2-214ENST00000452226 MAGI1Q96QZ7 1491 aaPredicted RBP32.85■■■□□ 2.85
PDLIM2-214ENST00000452226 CHMP7Q8WUX9 453 aaPredicted RBP32.82■■■□□ 2.84
PDLIM2-214ENST00000452226 GAPVD1Q14C86 1478 aa32.79■■■□□ 2.84
PDLIM2-214ENST00000452226 PBRM1Q86U86 1689 aa32.77■■■□□ 2.84
PDLIM2-214ENST00000452226 ABCA10Q8WWZ4 1543 aa32.76■■■□□ 2.83
PDLIM2-214ENST00000452226 SYNJ2O15056 1496 aa32.74■■■□□ 2.83
PDLIM2-214ENST00000452226 SYNJ1O43426 1573 aa32.71■■■□□ 2.83
PDLIM2-214ENST00000452226 ARAP1Q96P48 1450 aa32.71■■■□□ 2.83
PDLIM2-214ENST00000452226 CLASP1Q7Z460 1538 aa32.71■■■□□ 2.83
PDLIM2-214ENST00000452226 ABCA5Q8WWZ7 1642 aa32.7■■■□□ 2.83
PDLIM2-214ENST00000452226 WRNQ14191 1432 aaPredicted RBP eCLIP32.68■■■□□ 2.82
PDLIM2-214ENST00000452226 BIVM-ERCC5R4GMW8 1640 aa32.66■■■□□ 2.82
PDLIM2-214ENST00000452226 TOP2BQ02880 1626 aa32.65■■■□□ 2.82
PDLIM2-214ENST00000452226 TRHP20396 242 aaPredicted RBP32.59■■■□□ 2.81
PDLIM2-214ENST00000452226 ADAMTS12P58397 1594 aa32.45■■■□□ 2.78
PDLIM2-214ENST00000452226 GRIN2AQ12879 1464 aa32.44■■■□□ 2.78
PDLIM2-214ENST00000452226 FHAD1B1AJZ9 1412 aa32.36■■■□□ 2.77
PDLIM2-214ENST00000452226 ERICH3Q5RHP9 1530 aa32.36■■■□□ 2.77
PDLIM2-214ENST00000452226 NUP160Q12769 1436 aa32.32■■■□□ 2.76
PDLIM2-214ENST00000452226 CEP170Q5SW79 1584 aa32.32■■■□□ 2.76
PDLIM2-214ENST00000452226 ERCC6L2Q5T890 1561 aa32.22■■■□□ 2.75
PDLIM2-214ENST00000452226 SHROOM2Q13796 1616 aa32.16■■■□□ 2.74
PDLIM2-214ENST00000452226 KIF27Q86VH2 1401 aa32.02■■■□□ 2.72
PDLIM2-214ENST00000452226 PRG4Q92954 1404 aaPredicted RBP32.01■■■□□ 2.72
PDLIM2-214ENST00000452226 JPH4Q96JJ6 628 aa32.01■■■□□ 2.71
PDLIM2-214ENST00000452226 IGF1RP08069 1367 aa31.99■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms