RNA–Protein interactions for RNA: ENST00000450686.1

LINC01004-202, Transcript of long intergenic non-protein coding RNA 1004, humanhuman

TSL 3 BASIC

Gene LINC01004, Length 538 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01004-202ENST00000450686 NISCHQ9Y2I1 1504 aa25.64■■□□□ 1.7
LINC01004-202ENST00000450686 AEBP2Q6ZN18 517 aaPredicted RBP25.37■■□□□ 1.65
LINC01004-202ENST00000450686 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
LINC01004-202ENST00000450686 ABCC9O60706 1549 aa23.21■■□□□ 1.31
LINC01004-202ENST00000450686 CCDC180Q9P1Z9 1646 aa23■■□□□ 1.27
LINC01004-202ENST00000450686 RB1CC1Q8TDY2 1594 aa21.94■■□□□ 1.1
LINC01004-202ENST00000450686 DNAJC5BQ9UF47 199 aa21.85■■□□□ 1.09
LINC01004-202ENST00000450686 DCAF8L2P0C7V8 631 aa21.76■■□□□ 1.07
LINC01004-202ENST00000450686 NACADO15069 1562 aa21.74■■□□□ 1.07
LINC01004-202ENST00000450686 PHF23Q9BUL5 403 aaPredicted RBP21.69■■□□□ 1.06
LINC01004-202ENST00000450686 PABPN1Q86U42 306 aaKnown RBP eCLIP21.61■■□□□ 1.05
LINC01004-202ENST00000450686 UNC13AQ9UPW8 1703 aa21.58■■□□□ 1.05
LINC01004-202ENST00000450686 SENP3Q9H4L4 574 aaPredicted RBP21.51■■□□□ 1.03
LINC01004-202ENST00000450686 BICRAQ9NZM4 1560 aa21.39■■□□□ 1.01
LINC01004-202ENST00000450686 MYO15BQ96JP2 1530 aa21.33■■□□□ 1
LINC01004-202ENST00000450686 ZCCHC6Q5VYS8 1495 aaKnown RBP21.24■□□□□ 0.99
LINC01004-202ENST00000450686 SCRIBQ14160 1630 aa21.11■□□□□ 0.97
LINC01004-202ENST00000450686 DCAF1Q9Y4B6 1507 aa21.07■□□□□ 0.96
LINC01004-202ENST00000450686 CC2D2AQ9P2K1 1620 aa20.93■□□□□ 0.94
LINC01004-202ENST00000450686 SHROOM4Q9ULL8 1493 aa20.88■□□□□ 0.93
LINC01004-202ENST00000450686 CECR2Q9BXF3 1484 aa20.85■□□□□ 0.93
LINC01004-202ENST00000450686 EIF4G1Q04637 1599 aaKnown RBP20.84■□□□□ 0.93
LINC01004-202ENST00000450686 NCAPD3P42695 1498 aa20.06■□□□□ 0.8
LINC01004-202ENST00000450686 ATAD2BQ9ULI0 1458 aa20.06■□□□□ 0.8
LINC01004-202ENST00000450686 SMARCA4P51532 1647 aa20.05■□□□□ 0.8
LINC01004-202ENST00000450686 FOXD1Q16676 465 aa20■□□□□ 0.79
LINC01004-202ENST00000450686 DNAJC5Q9H3Z4 198 aa19.98■□□□□ 0.79
LINC01004-202ENST00000450686 ERCC6Q03468 1493 aa19.98■□□□□ 0.79
LINC01004-202ENST00000450686 POTEDQ86YR6 584 aa19.95■□□□□ 0.78
LINC01004-202ENST00000450686 SMARCA2P51531 1590 aa19.95■□□□□ 0.78
LINC01004-202ENST00000450686 NESP48681 1621 aa19.94■□□□□ 0.78
LINC01004-202ENST00000450686 PLPPR3Q6T4P5 718 aa19.94■□□□□ 0.78
LINC01004-202ENST00000450686 HMGXB3Q12766 1538 aa19.93■□□□□ 0.78
LINC01004-202ENST00000450686 CUX2O14529 1486 aa19.88■□□□□ 0.77
LINC01004-202ENST00000450686 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
LINC01004-202ENST00000450686 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
LINC01004-202ENST00000450686 MROH2BQ7Z745 1585 aa19.83■□□□□ 0.76
LINC01004-202ENST00000450686 PEG3Q9GZU2 1588 aa19.77■□□□□ 0.76
LINC01004-202ENST00000450686 THOC2Q8NI27 1593 aaKnown RBP19.7■□□□□ 0.74
LINC01004-202ENST00000450686 KIF21AQ7Z4S6 1674 aa19.68■□□□□ 0.74
LINC01004-202ENST00000450686 LAMC3Q9Y6N6 1575 aa19.65■□□□□ 0.74
LINC01004-202ENST00000450686 WIZO95785 1651 aa19.62■□□□□ 0.73
LINC01004-202ENST00000450686 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
LINC01004-202ENST00000450686 CADPSQ9ULU8 1353 aa19.47■□□□□ 0.71
LINC01004-202ENST00000450686 MRC2Q9UBG0 1479 aa19.41■□□□□ 0.7
LINC01004-202ENST00000450686 WDR62O43379 1518 aa19.36■□□□□ 0.69
LINC01004-202ENST00000450686 RSF1Q96T23 1441 aaPredicted RBP19.34■□□□□ 0.69
LINC01004-202ENST00000450686 CEP164Q9UPV0 1460 aa19.32■□□□□ 0.68
LINC01004-202ENST00000450686 FANCD2Q9BXW9 1451 aa19.3■□□□□ 0.68
LINC01004-202ENST00000450686 TOP2AP11388 1531 aaKnown RBP19.28■□□□□ 0.68
LINC01004-202ENST00000450686 CFTRP13569 1480 aa19.24■□□□□ 0.67
LINC01004-202ENST00000450686 TRIM41Q8WV44 630 aa19.22■□□□□ 0.67
LINC01004-202ENST00000450686 URB2Q14146 1524 aaKnown RBP19.2■□□□□ 0.66
LINC01004-202ENST00000450686 PPP6R1Q9UPN7 881 aa19.16■□□□□ 0.66
LINC01004-202ENST00000450686 ADRA2BP18089 450 aa19.11■□□□□ 0.65
LINC01004-202ENST00000450686 PRDM2Q13029 1718 aa19.1■□□□□ 0.65
LINC01004-202ENST00000450686 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
LINC01004-202ENST00000450686 ZNF608Q9ULD9 1512 aaPredicted RBP19■□□□□ 0.63
LINC01004-202ENST00000450686 OSCARQ8IYS5 282 aa18.97■□□□□ 0.63
LINC01004-202ENST00000450686 TOPBP1Q92547 1522 aa18.94■□□□□ 0.62
LINC01004-202ENST00000450686 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
LINC01004-202ENST00000450686 EIF4G3O43432 1585 aaKnown RBP18.87■□□□□ 0.61
LINC01004-202ENST00000450686 DNMBPQ6XZF7 1577 aa18.85■□□□□ 0.61
LINC01004-202ENST00000450686 RIMBP3CA6NJZ7 1639 aa18.85■□□□□ 0.61
LINC01004-202ENST00000450686 RIMBP3BA6NNM3 1639 aa18.85■□□□□ 0.61
LINC01004-202ENST00000450686 RIMBP3Q9UFD9 1639 aa18.85■□□□□ 0.61
LINC01004-202ENST00000450686 AQRO60306 1485 aaKnown RBP eCLIP18.79■□□□□ 0.6
LINC01004-202ENST00000450686 TARBP1Q13395 1621 aaKnown RBP18.79■□□□□ 0.6
LINC01004-202ENST00000450686 PIAS4Q8N2W9 510 aaPredicted RBP18.79■□□□□ 0.6
LINC01004-202ENST00000450686 CHD1O14646 1710 aa18.77■□□□□ 0.6
LINC01004-202ENST00000450686 ABCC8Q09428 1581 aa18.76■□□□□ 0.59
LINC01004-202ENST00000450686 ARHGEF11O15085 1522 aa18.75■□□□□ 0.59
LINC01004-202ENST00000450686 POLA1P09884 1462 aaPredicted RBP18.75■□□□□ 0.59
LINC01004-202ENST00000450686 RAD54L2Q9Y4B4 1467 aa18.74■□□□□ 0.59
LINC01004-202ENST00000450686 FBLN2P98095 1184 aa18.68■□□□□ 0.58
LINC01004-202ENST00000450686 TDRD9Q8NDG6 1382 aaKnown RBP18.67■□□□□ 0.58
LINC01004-202ENST00000450686 FGD5Q6ZNL6 1462 aa18.64■□□□□ 0.57
LINC01004-202ENST00000450686 CUX1P39880 1505 aa18.64■□□□□ 0.57
LINC01004-202ENST00000450686 SOGA1O94964 1423 aa18.63■□□□□ 0.57
LINC01004-202ENST00000450686 CYB5RLQ6IPT4 315 aa18.62■□□□□ 0.57
LINC01004-202ENST00000450686 SNAPC4Q5SXM2 1469 aa18.59■□□□□ 0.57
LINC01004-202ENST00000450686 ARAP1Q96P48 1450 aa18.58■□□□□ 0.57
LINC01004-202ENST00000450686 SUPT5HO00267 1087 aaKnown RBP18.52■□□□□ 0.56
LINC01004-202ENST00000450686 WDR97A6NE52 1622 aa18.52■□□□□ 0.55
LINC01004-202ENST00000450686 CLASP1Q7Z460 1538 aa18.49■□□□□ 0.55
LINC01004-202ENST00000450686 PBRM1Q86U86 1689 aa18.47■□□□□ 0.55
LINC01004-202ENST00000450686 MSH5O43196 834 aa18.47■□□□□ 0.55
LINC01004-202ENST00000450686 CHMP7Q8WUX9 453 aaPredicted RBP18.46■□□□□ 0.55
LINC01004-202ENST00000450686 GRIN2BQ13224 1484 aa18.46■□□□□ 0.54
LINC01004-202ENST00000450686 MAGI1Q96QZ7 1491 aaPredicted RBP18.45■□□□□ 0.54
LINC01004-202ENST00000450686 TRHP20396 242 aaPredicted RBP18.44■□□□□ 0.54
LINC01004-202ENST00000450686 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
LINC01004-202ENST00000450686 SYNJ2O15056 1496 aa18.41■□□□□ 0.54
LINC01004-202ENST00000450686 GAPVD1Q14C86 1478 aa18.41■□□□□ 0.54
LINC01004-202ENST00000450686 ABCA5Q8WWZ7 1642 aa18.38■□□□□ 0.53
LINC01004-202ENST00000450686 ABCA10Q8WWZ4 1543 aa18.36■□□□□ 0.53
LINC01004-202ENST00000450686 ERCC6L2Q5T890 1561 aa18.3■□□□□ 0.52
LINC01004-202ENST00000450686 BIVM-ERCC5R4GMW8 1640 aa18.27■□□□□ 0.52
LINC01004-202ENST00000450686 ADAMTS12P58397 1594 aa18.27■□□□□ 0.52
LINC01004-202ENST00000450686 TOP2BQ02880 1626 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms