RNA–Protein interactions for RNA: ENST00000450148.5

MSH5-209, Transcript of mutS homolog 5, humanhuman

TSL 5

Gene MSH5, Length 1,000 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-209ENST00000450148 NISCHQ9Y2I1 1504 aa30.85■■■□□ 2.53
MSH5-209ENST00000450148 CCDC180Q9P1Z9 1646 aa27.6■■■□□ 2.01
MSH5-209ENST00000450148 ABCC9O60706 1549 aa27.29■■□□□ 1.96
MSH5-209ENST00000450148 RB1CC1Q8TDY2 1594 aa26.1■■□□□ 1.77
MSH5-209ENST00000450148 NACADO15069 1562 aa26■■□□□ 1.75
MSH5-209ENST00000450148 DCAF8L2P0C7V8 631 aa25.78■■□□□ 1.72
MSH5-209ENST00000450148 MYO15BQ96JP2 1530 aa25.76■■□□□ 1.71
MSH5-209ENST00000450148 ZCCHC6Q5VYS8 1495 aaKnown RBP25.63■■□□□ 1.69
MSH5-209ENST00000450148 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
MSH5-209ENST00000450148 DCAF1Q9Y4B6 1507 aa25.52■■□□□ 1.68
MSH5-209ENST00000450148 PABPN1Q86U42 306 aaKnown RBP eCLIP25.42■■□□□ 1.668e-6■□□□□ 8.9
MSH5-209ENST00000450148 DNAJC5BQ9UF47 199 aa25.42■■□□□ 1.66
MSH5-209ENST00000450148 BICRAQ9NZM4 1560 aa25.41■■□□□ 1.66
MSH5-209ENST00000450148 SCRIBQ14160 1630 aa25.12■■□□□ 1.61
MSH5-209ENST00000450148 SHROOM4Q9ULL8 1493 aa25.02■■□□□ 1.6
MSH5-209ENST00000450148 EIF4G1Q04637 1599 aaKnown RBP24.71■■□□□ 1.55
MSH5-209ENST00000450148 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
MSH5-209ENST00000450148 CECR2Q9BXF3 1484 aa24.55■■□□□ 1.52
MSH5-209ENST00000450148 SMARCA4P51532 1647 aa24.02■■□□□ 1.44
MSH5-209ENST00000450148 NCAPD3P42695 1498 aa24■■□□□ 1.43
MSH5-209ENST00000450148 ATAD2BQ9ULI0 1458 aa23.97■■□□□ 1.43
MSH5-209ENST00000450148 BAZ1AQ9NRL2 1556 aaPredicted RBP23.91■■□□□ 1.42
MSH5-209ENST00000450148 SMARCA2P51531 1590 aa23.89■■□□□ 1.41
MSH5-209ENST00000450148 HMGXB3Q12766 1538 aa23.86■■□□□ 1.41
MSH5-209ENST00000450148 PEG3Q9GZU2 1588 aa23.82■■□□□ 1.4
MSH5-209ENST00000450148 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
MSH5-209ENST00000450148 BAZ1BQ9UIG0 1483 aaKnown RBP23.71■■□□□ 1.39
MSH5-209ENST00000450148 NESP48681 1621 aa23.55■■□□□ 1.36
MSH5-209ENST00000450148 WIZO95785 1651 aa23.52■■□□□ 1.36
MSH5-209ENST00000450148 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
MSH5-209ENST00000450148 CUX2O14529 1486 aa23.43■■□□□ 1.34
MSH5-209ENST00000450148 LAMC3Q9Y6N6 1575 aa23.42■■□□□ 1.34
MSH5-209ENST00000450148 RSF1Q96T23 1441 aaPredicted RBP23.36■■□□□ 1.33
MSH5-209ENST00000450148 THOC2Q8NI27 1593 aaKnown RBP23.3■■□□□ 1.32
MSH5-209ENST00000450148 KIF21AQ7Z4S6 1674 aa23.28■■□□□ 1.32
MSH5-209ENST00000450148 CADPSQ9ULU8 1353 aa23.27■■□□□ 1.31
MSH5-209ENST00000450148 PDS5BQ9NTI5 1447 aa23.22■■□□□ 1.31
MSH5-209ENST00000450148 TOP2AP11388 1531 aaKnown RBP23.21■■□□□ 1.31
MSH5-209ENST00000450148 DNAJC5Q9H3Z4 198 aa23.12■■□□□ 1.29
MSH5-209ENST00000450148 CFTRP13569 1480 aa23.07■■□□□ 1.28
MSH5-209ENST00000450148 MRC2Q9UBG0 1479 aa23.04■■□□□ 1.28
MSH5-209ENST00000450148 WDR62O43379 1518 aa23.01■■□□□ 1.27
MSH5-209ENST00000450148 FANCD2Q9BXW9 1451 aa22.99■■□□□ 1.27
MSH5-209ENST00000450148 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
MSH5-209ENST00000450148 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
MSH5-209ENST00000450148 PRDM2Q13029 1718 aa22.93■■□□□ 1.26
MSH5-209ENST00000450148 URB2Q14146 1524 aaKnown RBP22.82■■□□□ 1.24
MSH5-209ENST00000450148 TOPBP1Q92547 1522 aa22.61■■□□□ 1.21
MSH5-209ENST00000450148 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
MSH5-209ENST00000450148 ABCC8Q09428 1581 aa22.54■■□□□ 1.2
MSH5-209ENST00000450148 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
MSH5-209ENST00000450148 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
MSH5-209ENST00000450148 TARBP1Q13395 1621 aaKnown RBP22.42■■□□□ 1.18
MSH5-209ENST00000450148 SUPT5HO00267 1087 aaKnown RBP22.41■■□□□ 1.18
MSH5-209ENST00000450148 POLA1P09884 1462 aaPredicted RBP22.4■■□□□ 1.18
MSH5-209ENST00000450148 EIF4G3O43432 1585 aaKnown RBP22.38■■□□□ 1.17
MSH5-209ENST00000450148 OSCARQ8IYS5 282 aa22.35■■□□□ 1.17
MSH5-209ENST00000450148 CUX1P39880 1505 aa22.33■■□□□ 1.17
MSH5-209ENST00000450148 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
MSH5-209ENST00000450148 AQRO60306 1485 aaKnown RBP eCLIP22.29■■□□□ 1.161e-9■■■■■ 36.3
MSH5-209ENST00000450148 FGD5Q6ZNL6 1462 aa22.28■■□□□ 1.16
MSH5-209ENST00000450148 SOGA1O94964 1423 aa22.26■■□□□ 1.15
MSH5-209ENST00000450148 CHD1O14646 1710 aa22.2■■□□□ 1.14
MSH5-209ENST00000450148 WDR97A6NE52 1622 aa22.19■■□□□ 1.14
MSH5-209ENST00000450148 TDRD9Q8NDG6 1382 aaKnown RBP22.18■■□□□ 1.14
MSH5-209ENST00000450148 TRIM41Q8WV44 630 aa22.13■■□□□ 1.13
MSH5-209ENST00000450148 RIMBP3CA6NJZ7 1639 aa22.11■■□□□ 1.13
MSH5-209ENST00000450148 RIMBP3BA6NNM3 1639 aa22.11■■□□□ 1.13
MSH5-209ENST00000450148 RIMBP3Q9UFD9 1639 aa22.11■■□□□ 1.13
MSH5-209ENST00000450148 SNAPC4Q5SXM2 1469 aa22.08■■□□□ 1.12
MSH5-209ENST00000450148 BIVM-ERCC5R4GMW8 1640 aa22.06■■□□□ 1.12
MSH5-209ENST00000450148 ABCA10Q8WWZ4 1543 aa22.06■■□□□ 1.12
MSH5-209ENST00000450148 ARHGEF11O15085 1522 aa22.05■■□□□ 1.12
MSH5-209ENST00000450148 GRIN2BQ13224 1484 aa22.04■■□□□ 1.12
MSH5-209ENST00000450148 PBRM1Q86U86 1689 aa22.04■■□□□ 1.12
MSH5-209ENST00000450148 TOP2BQ02880 1626 aa22.03■■□□□ 1.12
MSH5-209ENST00000450148 SYNJ1O43426 1573 aa22.03■■□□□ 1.12
MSH5-209ENST00000450148 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
MSH5-209ENST00000450148 ABCA5Q8WWZ7 1642 aa22.02■■□□□ 1.12
MSH5-209ENST00000450148 GAPVD1Q14C86 1478 aa22.01■■□□□ 1.11
MSH5-209ENST00000450148 WRNQ14191 1432 aaPredicted RBP eCLIP22■■□□□ 1.11
MSH5-209ENST00000450148 FBLN2P98095 1184 aa22■■□□□ 1.11
MSH5-209ENST00000450148 SYNJ2O15056 1496 aa21.95■■□□□ 1.1
MSH5-209ENST00000450148 CLASP1Q7Z460 1538 aa21.95■■□□□ 1.1
MSH5-209ENST00000450148 CHMP7Q8WUX9 453 aaPredicted RBP21.91■■□□□ 1.1
MSH5-209ENST00000450148 ARAP1Q96P48 1450 aa21.86■■□□□ 1.09
MSH5-209ENST00000450148 ADAMTS12P58397 1594 aa21.82■■□□□ 1.08
MSH5-209ENST00000450148 CYB5RLQ6IPT4 315 aa21.8■■□□□ 1.08
MSH5-209ENST00000450148 ERICH3Q5RHP9 1530 aa21.78■■□□□ 1.08
MSH5-209ENST00000450148 GRIN2AQ12879 1464 aa21.77■■□□□ 1.08
MSH5-209ENST00000450148 FHAD1B1AJZ9 1412 aa21.73■■□□□ 1.07
MSH5-209ENST00000450148 NUP160Q12769 1436 aa21.72■■□□□ 1.07
MSH5-209ENST00000450148 CEP170Q5SW79 1584 aa21.72■■□□□ 1.07
MSH5-209ENST00000450148 ERCC6L2Q5T890 1561 aa21.63■■□□□ 1.05
MSH5-209ENST00000450148 SHROOM2Q13796 1616 aa21.62■■□□□ 1.05
MSH5-209ENST00000450148 IGF1RP08069 1367 aa21.55■■□□□ 1.04
MSH5-209ENST00000450148 KIF27Q86VH2 1401 aa21.55■■□□□ 1.04
MSH5-209ENST00000450148 RUSC2Q8N2Y8 1516 aa21.51■■□□□ 1.03
MSH5-209ENST00000450148 CUL7Q14999 1698 aa21.51■■□□□ 1.03
MSH5-209ENST00000450148 JPH4Q96JJ6 628 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms