RNA–Protein interactions for RNA: ENST00000448223.6

SMC6-207, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,233 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-207ENST00000448223 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
SMC6-207ENST00000448223 SHROOM4Q9ULL8 1493 aa15.32■□□□□ 0.04
SMC6-207ENST00000448223 MYT1Q01538 1121 aa15.31■□□□□ 0.04
SMC6-207ENST00000448223 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
SMC6-207ENST00000448223 SUPT5HO00267 1087 aaKnown RBP15.28■□□□□ 0.04
SMC6-207ENST00000448223 PELP1Q8IZL8 1130 aaKnown RBP15.26■□□□□ 0.03
SMC6-207ENST00000448223 EHMT2Q96KQ7 1210 aa14.62□□□□□ -0.07
SMC6-207ENST00000448223 ERICH6Q7L0X2 663 aa14.6□□□□□ -0.07
SMC6-207ENST00000448223 PCGF6Q9BYE7 350 aa14.6□□□□□ -0.07
SMC6-207ENST00000448223 CENPBP07199 599 aaPredicted RBP14.46□□□□□ -0.09
SMC6-207ENST00000448223 CCER1Q8TC90 406 aaPredicted RBP14.43□□□□□ -0.1
SMC6-207ENST00000448223 FAM9AQ8IZU1 332 aaPredicted RBP14.33□□□□□ -0.12
SMC6-207ENST00000448223 PPARGC1BQ86YN6 1023 aaKnown RBP14.31□□□□□ -0.12
SMC6-207ENST00000448223 TTBK1Q5TCY1 1321 aaPredicted RBP14.31□□□□□ -0.12
SMC6-207ENST00000448223 LOC105371045A0A1W2PR82 267 aa14.27□□□□□ -0.13
SMC6-207ENST00000448223 CHIC1Q5VXU3 224 aa14.26□□□□□ -0.13
SMC6-207ENST00000448223 HRCP23327 699 aa14.22□□□□□ -0.13
SMC6-207ENST00000448223 ZEB1P37275 1124 aaPredicted RBP14.04□□□□□ -0.16
SMC6-207ENST00000448223 MYO15BQ96JP2 1530 aa14.03□□□□□ -0.16
SMC6-207ENST00000448223 ZCCHC6Q5VYS8 1495 aaKnown RBP14□□□□□ -0.17
SMC6-207ENST00000448223 TRIM41Q8WV44 630 aa13.95□□□□□ -0.18
SMC6-207ENST00000448223 NEFLP07196 543 aa13.93□□□□□ -0.18
SMC6-207ENST00000448223 YTHDC1Q96MU7 727 aaKnown RBP13.91□□□□□ -0.18
SMC6-207ENST00000448223 TRIM26Q12899 539 aaPredicted RBP13.83□□□□□ -0.2
SMC6-207ENST00000448223 CCDC180Q9P1Z9 1646 aa13.76□□□□□ -0.21
SMC6-207ENST00000448223 RANGAP1P46060 587 aaPredicted RBP13.7□□□□□ -0.22
SMC6-207ENST00000448223 DCAF1Q9Y4B6 1507 aa13.65□□□□□ -0.22
SMC6-207ENST00000448223 RTL5Q5HYW3 569 aaPredicted RBP13.64□□□□□ -0.23
SMC6-207ENST00000448223 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.64□□□□□ -0.23
SMC6-207ENST00000448223 DAXXQ9UER7 740 aaPredicted RBP13.62□□□□□ -0.23
SMC6-207ENST00000448223 APLP2Q06481 763 aa13.6□□□□□ -0.23
SMC6-207ENST00000448223 UBTFP17480 764 aaKnown RBP13.51□□□□□ -0.25
SMC6-207ENST00000448223 EIF5BO60841 1220 aaKnown RBP13.4□□□□□ -0.26
SMC6-207ENST00000448223 GLIPR1L2Q4G1C9 344 aa13.4□□□□□ -0.26
SMC6-207ENST00000448223 SCRIBQ14160 1630 aa13.39□□□□□ -0.27
SMC6-207ENST00000448223 HNRNPUL2Q1KMD3 747 aaKnown RBP13.37□□□□□ -0.27
SMC6-207ENST00000448223 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
SMC6-207ENST00000448223 RSF1Q96T23 1441 aaPredicted RBP13.32□□□□□ -0.28
SMC6-207ENST00000448223 ABCC9O60706 1549 aa13.32□□□□□ -0.28
SMC6-207ENST00000448223 DIEXFQ68CQ4 756 aaKnown RBP13.31□□□□□ -0.28
SMC6-207ENST00000448223 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
SMC6-207ENST00000448223 ZNF316A6NFI3 1004 aaPredicted RBP13.29□□□□□ -0.28
SMC6-207ENST00000448223 RB1CC1Q8TDY2 1594 aa13.2□□□□□ -0.3
SMC6-207ENST00000448223 NEUROD1Q13562 356 aa13.2□□□□□ -0.3
SMC6-207ENST00000448223 PABPN1Q86U42 306 aaKnown RBP eCLIP13.19□□□□□ -0.3
SMC6-207ENST00000448223 ITGAEP38570 1179 aa13.19□□□□□ -0.3
SMC6-207ENST00000448223 ACIN1Q9UKV3 1341 aaKnown RBP13.14□□□□□ -0.31
SMC6-207ENST00000448223 ATP1B4Q9UN42 357 aaPredicted RBP13.13□□□□□ -0.31
SMC6-207ENST00000448223 MYT1LQ9UL68 1186 aa13.12□□□□□ -0.31
SMC6-207ENST00000448223 CDK11AQ9UQ88 783 aaPredicted RBP13.09□□□□□ -0.31
SMC6-207ENST00000448223 CECR2Q9BXF3 1484 aa13.08□□□□□ -0.32
SMC6-207ENST00000448223 BCANQ96GW7 911 aa13.08□□□□□ -0.32
SMC6-207ENST00000448223 CLSPNQ9HAW4 1339 aa13□□□□□ -0.33
SMC6-207ENST00000448223 CSRNP3Q8WYN3 585 aa12.99□□□□□ -0.33
SMC6-207ENST00000448223 MROH2BQ7Z745 1585 aa12.99□□□□□ -0.33
SMC6-207ENST00000448223 MIER1Q8N108 512 aa12.93□□□□□ -0.34
SMC6-207ENST00000448223 WIZO95785 1651 aa12.93□□□□□ -0.34
SMC6-207ENST00000448223 ANP32AP39687 249 aaKnown RBP12.92□□□□□ -0.34
SMC6-207ENST00000448223 BCL11AQ9H165 835 aa12.92□□□□□ -0.34
SMC6-207ENST00000448223 CEP162Q5TB80 1403 aa12.89□□□□□ -0.35
SMC6-207ENST00000448223 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
SMC6-207ENST00000448223 NACADO15069 1562 aa12.85□□□□□ -0.35
SMC6-207ENST00000448223 SOGA1O94964 1423 aa12.83□□□□□ -0.36
SMC6-207ENST00000448223 ANP32EQ9BTT0 268 aa12.83□□□□□ -0.36
SMC6-207ENST00000448223 CCDC88BA6NC98 1476 aa12.82□□□□□ -0.36
SMC6-207ENST00000448223 CNGB1Q14028 1251 aaPredicted RBP12.82□□□□□ -0.36
SMC6-207ENST00000448223 ANP32BQ92688 251 aaKnown RBP12.78□□□□□ -0.36
SMC6-207ENST00000448223 TNIKQ9UKE5 1360 aa12.77□□□□□ -0.37
SMC6-207ENST00000448223 NBR1Q14596 966 aa12.77□□□□□ -0.37
SMC6-207ENST00000448223 P3H3Q8IVL6 736 aa12.77□□□□□ -0.37
SMC6-207ENST00000448223 FAM50AQ14320 339 aaKnown RBP12.76□□□□□ -0.37
SMC6-207ENST00000448223 BAZ1AQ9NRL2 1556 aaPredicted RBP12.76□□□□□ -0.37
SMC6-207ENST00000448223 POLR3GLQ9BT43 218 aa12.76□□□□□ -0.37
SMC6-207ENST00000448223 HIRIP3Q9BW71 556 aaPredicted RBP12.73□□□□□ -0.37
SMC6-207ENST00000448223 TNNT2P45379 298 aaPredicted RBP12.72□□□□□ -0.37
SMC6-207ENST00000448223 NPM2Q86SE8 214 aaKnown RBP12.71□□□□□ -0.38
SMC6-207ENST00000448223 GOLGA3Q08378 1498 aa12.7□□□□□ -0.38
SMC6-207ENST00000448223 RUSC2Q8N2Y8 1516 aa12.7□□□□□ -0.38
SMC6-207ENST00000448223 WRNQ14191 1432 aaPredicted RBP eCLIP12.67□□□□□ -0.38
SMC6-207ENST00000448223 CLIP1P30622 1438 aa12.67□□□□□ -0.38
SMC6-207ENST00000448223 EEA1Q15075 1411 aa12.66□□□□□ -0.38
SMC6-207ENST00000448223 TOP2AP11388 1531 aaKnown RBP12.65□□□□□ -0.38
SMC6-207ENST00000448223 ZBTB47Q9UFB7 747 aaPredicted RBP12.65□□□□□ -0.38
SMC6-207ENST00000448223 FKBP8Q14318 412 aa12.64□□□□□ -0.39
SMC6-207ENST00000448223 DDX10Q13206 875 aaKnown RBP12.64□□□□□ -0.39
SMC6-207ENST00000448223 ANP32CO43423 234 aa12.6□□□□□ -0.39
SMC6-207ENST00000448223 CDK11BP21127 795 aaKnown RBP12.6□□□□□ -0.39
SMC6-207ENST00000448223 ARID3CA6NKF2 412 aa12.59□□□□□ -0.39
SMC6-207ENST00000448223 TRIM52Q96A61 297 aa12.59□□□□□ -0.39
SMC6-207ENST00000448223 SMARCA2P51531 1590 aa12.58□□□□□ -0.4
SMC6-207ENST00000448223 CEP164Q9UPV0 1460 aa12.58□□□□□ -0.4
SMC6-207ENST00000448223 SMARCA4P51532 1647 aa12.57□□□□□ -0.4
SMC6-207ENST00000448223 RTN4Q9NQC3 1192 aaKnown RBP12.57□□□□□ -0.4
SMC6-207ENST00000448223 ERICH6BQ5W0A0 696 aa12.56□□□□□ -0.4
SMC6-207ENST00000448223 KANK4Q5T7N3 995 aaPredicted RBP12.55□□□□□ -0.4
SMC6-207ENST00000448223 ARXQ96QS3 562 aa12.52□□□□□ -0.41
SMC6-207ENST00000448223 KCNH8Q96L42 1107 aa12.51□□□□□ -0.41
SMC6-207ENST00000448223 SIN3AQ96ST3 1273 aa12.51□□□□□ -0.41
SMC6-207ENST00000448223 VPS8Q8N3P4 1428 aa12.51□□□□□ -0.41
SMC6-207ENST00000448223 IRX6P78412 446 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms