RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 NISCHQ9Y2I1 1504 aa51.43■■■■■ 5.82
SDC1-205ENST00000447124 CCDC180Q9P1Z9 1646 aa45.81■■■■■ 4.92
SDC1-205ENST00000447124 ABCC9O60706 1549 aa45.65■■■■■ 4.9
SDC1-205ENST00000447124 RB1CC1Q8TDY2 1594 aa43.5■■■■■ 4.55
SDC1-205ENST00000447124 DCAF8L2P0C7V8 631 aa43.39■■■■■ 4.54
SDC1-205ENST00000447124 NACADO15069 1562 aa43.32■■■■■ 4.52
SDC1-205ENST00000447124 MYO15BQ96JP2 1530 aa42.86■■■■■ 4.45
SDC1-205ENST00000447124 DNAJC5BQ9UF47 199 aa42.69■■■■■ 4.42
SDC1-205ENST00000447124 PABPN1Q86U42 306 aaKnown RBP eCLIP42.68■■■■■ 4.42
SDC1-205ENST00000447124 ZCCHC6Q5VYS8 1495 aaKnown RBP42.67■■■■■ 4.42
SDC1-205ENST00000447124 UNC13AQ9UPW8 1703 aa42.49■■■■■ 4.39
SDC1-205ENST00000447124 DCAF1Q9Y4B6 1507 aa42.45■■■■■ 4.39
SDC1-205ENST00000447124 BICRAQ9NZM4 1560 aa42.31■■■■■ 4.36
SDC1-205ENST00000447124 SCRIBQ14160 1630 aa41.87■■■■■ 4.29
SDC1-205ENST00000447124 SHROOM4Q9ULL8 1493 aa41.64■■■■■ 4.26
SDC1-205ENST00000447124 EIF4G1Q04637 1599 aaKnown RBP41.2■■■■■ 4.19
SDC1-205ENST00000447124 CC2D2AQ9P2K1 1620 aa41.19■■■■■ 4.18
SDC1-205ENST00000447124 CECR2Q9BXF3 1484 aa41.06■■■■■ 4.16
SDC1-205ENST00000447124 NCAPD3P42695 1498 aa40.08■■■■■ 4.01
SDC1-205ENST00000447124 ATAD2BQ9ULI0 1458 aa40.01■■■■■ 4
SDC1-205ENST00000447124 SMARCA4P51532 1647 aa39.97■■■■□ 3.99
SDC1-205ENST00000447124 BAZ1AQ9NRL2 1556 aaPredicted RBP39.83■■■■□ 3.97
SDC1-205ENST00000447124 SMARCA2P51531 1590 aa39.81■■■■□ 3.96
SDC1-205ENST00000447124 HMGXB3Q12766 1538 aa39.7■■■■□ 3.95
SDC1-205ENST00000447124 MROH2BQ7Z745 1585 aa39.67■■■■□ 3.94
SDC1-205ENST00000447124 PEG3Q9GZU2 1588 aa39.58■■■■□ 3.93
SDC1-205ENST00000447124 BAZ1BQ9UIG0 1483 aaKnown RBP39.57■■■■□ 3.93
SDC1-205ENST00000447124 NESP48681 1621 aa39.35■■■■□ 3.89
SDC1-205ENST00000447124 ERCC6Q03468 1493 aa39.3■■■■□ 3.88
SDC1-205ENST00000447124 WIZO95785 1651 aa39.16■■■■□ 3.86
SDC1-205ENST00000447124 CUX2O14529 1486 aa39.11■■■■□ 3.85
SDC1-205ENST00000447124 RSF1Q96T23 1441 aaPredicted RBP39.02■■■■□ 3.84
SDC1-205ENST00000447124 LAMC3Q9Y6N6 1575 aa39■■■■□ 3.83
SDC1-205ENST00000447124 CADPSQ9ULU8 1353 aa38.91■■■■□ 3.82
SDC1-205ENST00000447124 PDS5BQ9NTI5 1447 aa38.84■■■■□ 3.81
SDC1-205ENST00000447124 DNAJC5Q9H3Z4 198 aa38.84■■■■□ 3.81
SDC1-205ENST00000447124 THOC2Q8NI27 1593 aaKnown RBP38.74■■■■□ 3.79
SDC1-205ENST00000447124 KIF21AQ7Z4S6 1674 aa38.71■■■■□ 3.79
SDC1-205ENST00000447124 TOP2AP11388 1531 aaKnown RBP38.65■■■■□ 3.78
SDC1-205ENST00000447124 CFTRP13569 1480 aa38.5■■■■□ 3.75
SDC1-205ENST00000447124 MRC2Q9UBG0 1479 aa38.45■■■■□ 3.75
SDC1-205ENST00000447124 FANCD2Q9BXW9 1451 aa38.4■■■■□ 3.74
SDC1-205ENST00000447124 CEP164Q9UPV0 1460 aa38.35■■■■□ 3.73
SDC1-205ENST00000447124 WDR62O43379 1518 aa38.33■■■■□ 3.73
SDC1-205ENST00000447124 CCDC88BA6NC98 1476 aa38.32■■■■□ 3.72
SDC1-205ENST00000447124 URB2Q14146 1524 aaKnown RBP38.08■■■■□ 3.69
SDC1-205ENST00000447124 PRDM2Q13029 1718 aa37.92■■■■□ 3.66
SDC1-205ENST00000447124 TOPBP1Q92547 1522 aa37.72■■■■□ 3.63
SDC1-205ENST00000447124 SUPT5HO00267 1087 aaKnown RBP37.64■■■■□ 3.62
SDC1-205ENST00000447124 ABCC8Q09428 1581 aa37.62■■■■□ 3.61
SDC1-205ENST00000447124 IFT140Q96RY7 1462 aa37.61■■■■□ 3.61
SDC1-205ENST00000447124 ZNF608Q9ULD9 1512 aaPredicted RBP37.58■■■■□ 3.61
SDC1-205ENST00000447124 DNMBPQ6XZF7 1577 aa37.55■■■■□ 3.6
SDC1-205ENST00000447124 OSCARQ8IYS5 282 aa37.53■■■■□ 3.6
SDC1-205ENST00000447124 POLA1P09884 1462 aaPredicted RBP37.36■■■■□ 3.57
SDC1-205ENST00000447124 TARBP1Q13395 1621 aaKnown RBP37.32■■■■□ 3.57
SDC1-205ENST00000447124 AQRO60306 1485 aaKnown RBP eCLIP37.32■■■■□ 3.562e-7■■■■■ 33.9
SDC1-205ENST00000447124 RAD54L2Q9Y4B4 1467 aa37.29■■■■□ 3.56
SDC1-205ENST00000447124 TRIM41Q8WV44 630 aa37.26■■■■□ 3.56
SDC1-205ENST00000447124 EIF4G3O43432 1585 aaKnown RBP37.25■■■■□ 3.55
SDC1-205ENST00000447124 SOGA1O94964 1423 aa37.25■■■■□ 3.55
SDC1-205ENST00000447124 CUX1P39880 1505 aa37.22■■■■□ 3.55
SDC1-205ENST00000447124 FGD5Q6ZNL6 1462 aa37.18■■■■□ 3.54
SDC1-205ENST00000447124 TDRD9Q8NDG6 1382 aaKnown RBP37.17■■■■□ 3.54
SDC1-205ENST00000447124 FBLN2P98095 1184 aa37.01■■■■□ 3.52
SDC1-205ENST00000447124 CHD1O14646 1710 aa36.9■■■■□ 3.5
SDC1-205ENST00000447124 SNAPC4Q5SXM2 1469 aa36.87■■■■□ 3.49
SDC1-205ENST00000447124 WDR97A6NE52 1622 aa36.86■■■■□ 3.49
SDC1-205ENST00000447124 RIMBP3CA6NJZ7 1639 aa36.86■■■■□ 3.49
SDC1-205ENST00000447124 RIMBP3BA6NNM3 1639 aa36.86■■■■□ 3.49
SDC1-205ENST00000447124 RIMBP3Q9UFD9 1639 aa36.86■■■■□ 3.49
SDC1-205ENST00000447124 GRIN2BQ13224 1484 aa36.82■■■■□ 3.48
SDC1-205ENST00000447124 ARHGEF11O15085 1522 aa36.81■■■■□ 3.48
SDC1-205ENST00000447124 CHMP7Q8WUX9 453 aaPredicted RBP36.79■■■■□ 3.48
SDC1-205ENST00000447124 ABCA10Q8WWZ4 1543 aa36.78■■■■□ 3.48
SDC1-205ENST00000447124 GAPVD1Q14C86 1478 aa36.75■■■■□ 3.47
SDC1-205ENST00000447124 WRNQ14191 1432 aaPredicted RBP eCLIP36.75■■■■□ 3.47
SDC1-205ENST00000447124 MAGI1Q96QZ7 1491 aaPredicted RBP36.75■■■■□ 3.47
SDC1-205ENST00000447124 SYNJ1O43426 1573 aa36.66■■■■□ 3.46
SDC1-205ENST00000447124 TOP2BQ02880 1626 aa36.66■■■■□ 3.46
SDC1-205ENST00000447124 CYB5RLQ6IPT4 315 aa36.65■■■■□ 3.46
SDC1-205ENST00000447124 SYNJ2O15056 1496 aa36.64■■■■□ 3.46
SDC1-205ENST00000447124 BIVM-ERCC5R4GMW8 1640 aa36.63■■■■□ 3.45
SDC1-205ENST00000447124 ABCA5Q8WWZ7 1642 aa36.62■■■■□ 3.45
SDC1-205ENST00000447124 PBRM1Q86U86 1689 aa36.58■■■■□ 3.45
SDC1-205ENST00000447124 CLASP1Q7Z460 1538 aa36.54■■■■□ 3.44
SDC1-205ENST00000447124 ARAP1Q96P48 1450 aa36.51■■■■□ 3.44
SDC1-205ENST00000447124 GRIN2AQ12879 1464 aa36.34■■■■□ 3.41
SDC1-205ENST00000447124 ADAMTS12P58397 1594 aa36.32■■■■□ 3.4
SDC1-205ENST00000447124 FHAD1B1AJZ9 1412 aa36.31■■■■□ 3.4
SDC1-205ENST00000447124 ERICH3Q5RHP9 1530 aa36.28■■■■□ 3.4
SDC1-205ENST00000447124 NUP160Q12769 1436 aa36.24■■■■□ 3.39
SDC1-205ENST00000447124 CEP170Q5SW79 1584 aa36.19■■■■□ 3.38
SDC1-205ENST00000447124 ERCC6L2Q5T890 1561 aa36.08■■■■□ 3.37
SDC1-205ENST00000447124 IGF1RP08069 1367 aa36.07■■■■□ 3.36
SDC1-205ENST00000447124 TRHP20396 242 aaPredicted RBP36.07■■■■□ 3.36
SDC1-205ENST00000447124 KIF27Q86VH2 1401 aa36.01■■■■□ 3.36
SDC1-205ENST00000447124 JPH4Q96JJ6 628 aa35.98■■■■□ 3.35
SDC1-205ENST00000447124 SHROOM2Q13796 1616 aa35.95■■■■□ 3.35
SDC1-205ENST00000447124 PRG4Q92954 1404 aaPredicted RBP35.88■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms