RNA–Protein interactions for RNA: ENST00000446046.5

FN1-212, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 7,952 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-212ENST00000446046 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
FN1-212ENST00000446046 NISCHQ9Y2I1 1504 aa19.53■□□□□ 0.72
FN1-212ENST00000446046 FAM9AQ8IZU1 332 aaPredicted RBP18.95■□□□□ 0.62
FN1-212ENST00000446046 SUPT5HO00267 1087 aaKnown RBP18.78■□□□□ 0.6
FN1-212ENST00000446046 APLP2Q06481 763 aa18.57■□□□□ 0.56
FN1-212ENST00000446046 SHROOM4Q9ULL8 1493 aa18.49■□□□□ 0.55
FN1-212ENST00000446046 PELP1Q8IZL8 1130 aaKnown RBP18.44■□□□□ 0.54
FN1-212ENST00000446046 EHMT2Q96KQ7 1210 aa18.06■□□□□ 0.48
FN1-212ENST00000446046 ATP1B4Q9UN42 357 aaPredicted RBP17.77■□□□□ 0.44
FN1-212ENST00000446046 TRIM41Q8WV44 630 aa17.67■□□□□ 0.42
FN1-212ENST00000446046 CCER1Q8TC90 406 aaPredicted RBP17.63■□□□□ 0.41
FN1-212ENST00000446046 UBTFP17480 764 aaKnown RBP17.6■□□□□ 0.41
FN1-212ENST00000446046 ZEB1P37275 1124 aaPredicted RBP17.55■□□□□ 0.4
FN1-212ENST00000446046 RANGAP1P46060 587 aaPredicted RBP17.55■□□□□ 0.4
FN1-212ENST00000446046 TTBK1Q5TCY1 1321 aaPredicted RBP17.46■□□□□ 0.39
FN1-212ENST00000446046 MYT1LQ9UL68 1186 aa17.42■□□□□ 0.38
FN1-212ENST00000446046 PCGF6Q9BYE7 350 aa17.39■□□□□ 0.37
FN1-212ENST00000446046 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
FN1-212ENST00000446046 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
FN1-212ENST00000446046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.26■□□□□ 0.35
FN1-212ENST00000446046 NEFLP07196 543 aa17.26■□□□□ 0.35
FN1-212ENST00000446046 HNRNPUL2Q1KMD3 747 aaKnown RBP17.26■□□□□ 0.35
FN1-212ENST00000446046 ABCC9O60706 1549 aa16.99■□□□□ 0.31
FN1-212ENST00000446046 DAXXQ9UER7 740 aaPredicted RBP16.93■□□□□ 0.3
FN1-212ENST00000446046 CCDC180Q9P1Z9 1646 aa16.86■□□□□ 0.29
FN1-212ENST00000446046 SLC4A1APQ9BWU0 796 aaKnown RBP16.85■□□□□ 0.29
FN1-212ENST00000446046 CHIC1Q5VXU3 224 aa16.82■□□□□ 0.28
FN1-212ENST00000446046 POLR3GLQ9BT43 218 aa16.82■□□□□ 0.28
FN1-212ENST00000446046 ITGAEP38570 1179 aa16.81■□□□□ 0.28
FN1-212ENST00000446046 TRIM26Q12899 539 aaPredicted RBP16.81■□□□□ 0.28
FN1-212ENST00000446046 YTHDC1Q96MU7 727 aaKnown RBP16.66■□□□□ 0.26
FN1-212ENST00000446046 PABPN1Q86U42 306 aaKnown RBP eCLIP16.65■□□□□ 0.26
FN1-212ENST00000446046 FBLN2P98095 1184 aa16.6■□□□□ 0.25
FN1-212ENST00000446046 FAM50AQ14320 339 aaKnown RBP16.59■□□□□ 0.25
FN1-212ENST00000446046 PPARGC1BQ86YN6 1023 aaKnown RBP16.59■□□□□ 0.25
FN1-212ENST00000446046 MYT1Q01538 1121 aa16.56■□□□□ 0.24
FN1-212ENST00000446046 TRIM52Q96A61 297 aa16.53■□□□□ 0.24
FN1-212ENST00000446046 ESF1Q9H501 851 aaKnown RBP16.53■□□□□ 0.24
FN1-212ENST00000446046 ZBTB47Q9UFB7 747 aaPredicted RBP16.51■□□□□ 0.23
FN1-212ENST00000446046 NEFMP07197 916 aa16.51■□□□□ 0.23
FN1-212ENST00000446046 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
FN1-212ENST00000446046 BCANQ96GW7 911 aa16.49■□□□□ 0.23
FN1-212ENST00000446046 CLSPNQ9HAW4 1339 aa16.49■□□□□ 0.23
FN1-212ENST00000446046 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
FN1-212ENST00000446046 ZNF316A6NFI3 1004 aaPredicted RBP16.43■□□□□ 0.22
FN1-212ENST00000446046 RB1CC1Q8TDY2 1594 aa16.43■□□□□ 0.22
FN1-212ENST00000446046 NPM1P06748 294 aaKnown RBP eCLIP16.42■□□□□ 0.22
FN1-212ENST00000446046 CNGB1Q14028 1251 aaPredicted RBP16.37■□□□□ 0.21
FN1-212ENST00000446046 SLC24A1O60721 1099 aa16.32■□□□□ 0.2
FN1-212ENST00000446046 LOC105371045A0A1W2PR82 267 aa16.27■□□□□ 0.2
FN1-212ENST00000446046 STAG3Q9UJ98 1225 aa16.26■□□□□ 0.19
FN1-212ENST00000446046 HRCP23327 699 aa16.24■□□□□ 0.19
FN1-212ENST00000446046 ANP32CO43423 234 aa16.22■□□□□ 0.19
FN1-212ENST00000446046 NEUROD1Q13562 356 aa16.21■□□□□ 0.19
FN1-212ENST00000446046 ZNF326Q5BKZ1 582 aaKnown RBP16.21■□□□□ 0.18
FN1-212ENST00000446046 RTL5Q5HYW3 569 aaPredicted RBP16.2■□□□□ 0.18
FN1-212ENST00000446046 CANXP27824 592 aaKnown RBP16.19■□□□□ 0.18
FN1-212ENST00000446046 NACADO15069 1562 aa16.17■□□□□ 0.18
FN1-212ENST00000446046 DIEXFQ68CQ4 756 aaKnown RBP16.11■□□□□ 0.17
FN1-212ENST00000446046 ZNF777Q9ULD5 760 aaPredicted RBP16.11■□□□□ 0.17
FN1-212ENST00000446046 ACIN1Q9UKV3 1341 aaKnown RBP16.05■□□□□ 0.16
FN1-212ENST00000446046 ZCCHC6Q5VYS8 1495 aaKnown RBP16.05■□□□□ 0.16
FN1-212ENST00000446046 CSRNP3Q8WYN3 585 aa16.02■□□□□ 0.16
FN1-212ENST00000446046 P3H3Q8IVL6 736 aa16.02■□□□□ 0.15
FN1-212ENST00000446046 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
FN1-212ENST00000446046 CHGAP10645 457 aaKnown RBP15.98■□□□□ 0.15
FN1-212ENST00000446046 ARID3CA6NKF2 412 aa15.95■□□□□ 0.14
FN1-212ENST00000446046 ERCC6Q03468 1493 aa15.94■□□□□ 0.14
FN1-212ENST00000446046 TONSLQ96HA7 1378 aa15.93■□□□□ 0.14
FN1-212ENST00000446046 TSPY4P0CV99 314 aa15.93■□□□□ 0.14
FN1-212ENST00000446046 TSPY10P0CW01 314 aa15.93■□□□□ 0.14
FN1-212ENST00000446046 PLPPR3Q6T4P5 718 aa15.92■□□□□ 0.14
FN1-212ENST00000446046 NPM2Q86SE8 214 aaKnown RBP15.88■□□□□ 0.13
FN1-212ENST00000446046 BAZ1BQ9UIG0 1483 aaKnown RBP15.85■□□□□ 0.13
FN1-212ENST00000446046 MTUS2Q5JR59 1369 aa15.84■□□□□ 0.13
FN1-212ENST00000446046 RSF1Q96T23 1441 aaPredicted RBP15.84■□□□□ 0.13
FN1-212ENST00000446046 UPF2Q9HAU5 1272 aaKnown RBP15.83■□□□□ 0.12
FN1-212ENST00000446046 BCL11AQ9H165 835 aa15.81■□□□□ 0.12
FN1-212ENST00000446046 SCAF1Q9H7N4 1312 aaKnown RBP15.8■□□□□ 0.12
FN1-212ENST00000446046 ANP32BQ92688 251 aaKnown RBP15.79■□□□□ 0.12
FN1-212ENST00000446046 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.78■□□□□ 0.12
FN1-212ENST00000446046 HSP90AA1P07900 732 aaKnown RBP15.77■□□□□ 0.12
FN1-212ENST00000446046 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.76■□□□□ 0.11
FN1-212ENST00000446046 PPP1R15AO75807 674 aaPredicted RBP15.76■□□□□ 0.11
FN1-212ENST00000446046 C14orf37Q86TY3 774 aa15.75■□□□□ 0.11
FN1-212ENST00000446046 ANP32AP39687 249 aaKnown RBP15.75■□□□□ 0.11
FN1-212ENST00000446046 EEA1Q15075 1411 aa15.74■□□□□ 0.11
FN1-212ENST00000446046 ARID4BQ4LE39 1312 aaPredicted RBP15.72■□□□□ 0.11
FN1-212ENST00000446046 PLEKHD1A6NEE1 506 aa15.71■□□□□ 0.11
FN1-212ENST00000446046 WDR43Q15061 677 aaKnown RBP eCLIP15.71■□□□□ 0.11
FN1-212ENST00000446046 BAZ1AQ9NRL2 1556 aaPredicted RBP15.7■□□□□ 0.1
FN1-212ENST00000446046 HAP1P54257 671 aaPredicted RBP15.69■□□□□ 0.1
FN1-212ENST00000446046 MYH16Q9H6N6 1097 aa15.69■□□□□ 0.1
FN1-212ENST00000446046 TMC1Q8TDI8 760 aa15.66■□□□□ 0.1
FN1-212ENST00000446046 A0A0G2JS52 829 aa15.65■□□□□ 0.1
FN1-212ENST00000446046 KIF27Q86VH2 1401 aa15.64■□□□□ 0.09
FN1-212ENST00000446046 CDCA8Q53HL2 280 aa15.64■□□□□ 0.09
FN1-212ENST00000446046 EIF5BO60841 1220 aaKnown RBP15.61■□□□□ 0.09
FN1-212ENST00000446046 CDK11BP21127 795 aaKnown RBP15.61■□□□□ 0.09
FN1-212ENST00000446046 GOLGA3Q08378 1498 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms