RNA–Protein interactions for RNA: ENST00000445064.1

SEC13-213, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 5

Gene SEC13, Length 669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-213ENST00000445064 NISCHQ9Y2I1 1504 aa38.57■■■■□ 3.76
SEC13-213ENST00000445064 ABCC9O60706 1549 aa34.61■■■■□ 3.13
SEC13-213ENST00000445064 CCDC180Q9P1Z9 1646 aa34.52■■■■□ 3.12
SEC13-213ENST00000445064 RB1CC1Q8TDY2 1594 aa32.89■■■□□ 2.86
SEC13-213ENST00000445064 DCAF8L2P0C7V8 631 aa32.72■■■□□ 2.83
SEC13-213ENST00000445064 NACADO15069 1562 aa32.66■■■□□ 2.82
SEC13-213ENST00000445064 DNAJC5BQ9UF47 199 aa32.52■■■□□ 2.8
SEC13-213ENST00000445064 PABPN1Q86U42 306 aaKnown RBP eCLIP32.31■■■□□ 2.76
SEC13-213ENST00000445064 MYO15BQ96JP2 1530 aa32.19■■■□□ 2.74
SEC13-213ENST00000445064 UNC13AQ9UPW8 1703 aa32.15■■■□□ 2.74
SEC13-213ENST00000445064 BICRAQ9NZM4 1560 aa31.95■■■□□ 2.71
SEC13-213ENST00000445064 ZCCHC6Q5VYS8 1495 aaKnown RBP31.93■■■□□ 2.7
SEC13-213ENST00000445064 DCAF1Q9Y4B6 1507 aa31.8■■■□□ 2.68
SEC13-213ENST00000445064 SCRIBQ14160 1630 aa31.53■■■□□ 2.64
SEC13-213ENST00000445064 SHROOM4Q9ULL8 1493 aa31.43■■■□□ 2.62
SEC13-213ENST00000445064 CC2D2AQ9P2K1 1620 aa31.23■■■□□ 2.59
SEC13-213ENST00000445064 EIF4G1Q04637 1599 aaKnown RBP31.16■■■□□ 2.58
SEC13-213ENST00000445064 CECR2Q9BXF3 1484 aa31.14■■■□□ 2.58
SEC13-213ENST00000445064 NCAPD3P42695 1498 aa30.19■■■□□ 2.42
SEC13-213ENST00000445064 ATAD2BQ9ULI0 1458 aa30.11■■■□□ 2.41
SEC13-213ENST00000445064 SMARCA4P51532 1647 aa30.06■■■□□ 2.4
SEC13-213ENST00000445064 SMARCA2P51531 1590 aa29.98■■■□□ 2.39
SEC13-213ENST00000445064 HMGXB3Q12766 1538 aa29.91■■■□□ 2.38
SEC13-213ENST00000445064 BAZ1AQ9NRL2 1556 aaPredicted RBP29.91■■■□□ 2.38
SEC13-213ENST00000445064 ERCC6Q03468 1493 aa29.86■■■□□ 2.37
SEC13-213ENST00000445064 BAZ1BQ9UIG0 1483 aaKnown RBP29.81■■■□□ 2.36
SEC13-213ENST00000445064 DNAJC5Q9H3Z4 198 aa29.8■■■□□ 2.36
SEC13-213ENST00000445064 NESP48681 1621 aa29.75■■■□□ 2.35
SEC13-213ENST00000445064 MROH2BQ7Z745 1585 aa29.75■■■□□ 2.35
SEC13-213ENST00000445064 CUX2O14529 1486 aa29.74■■■□□ 2.35
SEC13-213ENST00000445064 PEG3Q9GZU2 1588 aa29.73■■■□□ 2.35
SEC13-213ENST00000445064 LAMC3Q9Y6N6 1575 aa29.47■■■□□ 2.31
SEC13-213ENST00000445064 WIZO95785 1651 aa29.39■■■□□ 2.3
SEC13-213ENST00000445064 THOC2Q8NI27 1593 aaKnown RBP29.35■■■□□ 2.29
SEC13-213ENST00000445064 PDS5BQ9NTI5 1447 aa29.34■■■□□ 2.29
SEC13-213ENST00000445064 KIF21AQ7Z4S6 1674 aa29.31■■■□□ 2.28
SEC13-213ENST00000445064 CADPSQ9ULU8 1353 aa29.3■■■□□ 2.28
SEC13-213ENST00000445064 RSF1Q96T23 1441 aaPredicted RBP29.15■■■□□ 2.26
SEC13-213ENST00000445064 MRC2Q9UBG0 1479 aa29.06■■■□□ 2.24
SEC13-213ENST00000445064 WDR62O43379 1518 aa28.97■■■□□ 2.23
SEC13-213ENST00000445064 TOP2AP11388 1531 aaKnown RBP28.97■■■□□ 2.23
SEC13-213ENST00000445064 CEP164Q9UPV0 1460 aa28.96■■■□□ 2.23
SEC13-213ENST00000445064 CFTRP13569 1480 aa28.95■■■□□ 2.22
SEC13-213ENST00000445064 FANCD2Q9BXW9 1451 aa28.95■■■□□ 2.22
SEC13-213ENST00000445064 URB2Q14146 1524 aaKnown RBP28.72■■■□□ 2.19
SEC13-213ENST00000445064 CCDC88BA6NC98 1476 aa28.71■■■□□ 2.19
SEC13-213ENST00000445064 PRDM2Q13029 1718 aa28.58■■■□□ 2.17
SEC13-213ENST00000445064 TRIM41Q8WV44 630 aa28.55■■■□□ 2.16
SEC13-213ENST00000445064 OSCARQ8IYS5 282 aa28.51■■■□□ 2.15
SEC13-213ENST00000445064 TOPBP1Q92547 1522 aa28.4■■■□□ 2.14
SEC13-213ENST00000445064 IFT140Q96RY7 1462 aa28.38■■■□□ 2.13
SEC13-213ENST00000445064 ZNF608Q9ULD9 1512 aaPredicted RBP28.38■■■□□ 2.13
SEC13-213ENST00000445064 ABCC8Q09428 1581 aa28.33■■■□□ 2.12
SEC13-213ENST00000445064 DNMBPQ6XZF7 1577 aa28.27■■■□□ 2.12
SEC13-213ENST00000445064 EIF4G3O43432 1585 aaKnown RBP28.16■■■□□ 2.1
SEC13-213ENST00000445064 AQRO60306 1485 aaKnown RBP eCLIP28.15■■■□□ 2.12e-11■■■□□ 15.3
SEC13-213ENST00000445064 TARBP1Q13395 1621 aaKnown RBP28.13■■■□□ 2.09
SEC13-213ENST00000445064 POLA1P09884 1462 aaPredicted RBP28.11■■■□□ 2.09
SEC13-213ENST00000445064 RAD54L2Q9Y4B4 1467 aa28.06■■■□□ 2.08
SEC13-213ENST00000445064 RIMBP3CA6NJZ7 1639 aa28.06■■■□□ 2.08
SEC13-213ENST00000445064 RIMBP3BA6NNM3 1639 aa28.06■■■□□ 2.08
SEC13-213ENST00000445064 RIMBP3Q9UFD9 1639 aa28.06■■■□□ 2.08
SEC13-213ENST00000445064 SOGA1O94964 1423 aa28.03■■■□□ 2.08
SEC13-213ENST00000445064 FBLN2P98095 1184 aa28.02■■■□□ 2.08
SEC13-213ENST00000445064 SUPT5HO00267 1087 aaKnown RBP28■■■□□ 2.07
SEC13-213ENST00000445064 TDRD9Q8NDG6 1382 aaKnown RBP27.99■■■□□ 2.07
SEC13-213ENST00000445064 ARHGEF11O15085 1522 aa27.97■■■□□ 2.07
SEC13-213ENST00000445064 CHD1O14646 1710 aa27.96■■■□□ 2.07
SEC13-213ENST00000445064 FGD5Q6ZNL6 1462 aa27.95■■■□□ 2.06
SEC13-213ENST00000445064 CUX1P39880 1505 aa27.92■■■□□ 2.06
SEC13-213ENST00000445064 CYB5RLQ6IPT4 315 aa27.87■■■□□ 2.05
SEC13-213ENST00000445064 SNAPC4Q5SXM2 1469 aa27.82■■■□□ 2.04
SEC13-213ENST00000445064 CHMP7Q8WUX9 453 aaPredicted RBP27.79■■■□□ 2.04
SEC13-213ENST00000445064 WDR97A6NE52 1622 aa27.78■■■□□ 2.04
SEC13-213ENST00000445064 GRIN2BQ13224 1484 aa27.74■■■□□ 2.03
SEC13-213ENST00000445064 ARAP1Q96P48 1450 aa27.7■■■□□ 2.03
SEC13-213ENST00000445064 MAGI1Q96QZ7 1491 aaPredicted RBP27.7■■■□□ 2.03
SEC13-213ENST00000445064 GAPVD1Q14C86 1478 aa27.66■■■□□ 2.02
SEC13-213ENST00000445064 SYNJ2O15056 1496 aa27.64■■■□□ 2.01
SEC13-213ENST00000445064 CLASP1Q7Z460 1538 aa27.62■■■□□ 2.01
SEC13-213ENST00000445064 SYNJ1O43426 1573 aa27.61■■■□□ 2.01
SEC13-213ENST00000445064 ABCA10Q8WWZ4 1543 aa27.61■■■□□ 2.01
SEC13-213ENST00000445064 PBRM1Q86U86 1689 aa27.6■■■□□ 2.01
SEC13-213ENST00000445064 TRHP20396 242 aaPredicted RBP27.56■■■□□ 2
SEC13-213ENST00000445064 ABCA5Q8WWZ7 1642 aa27.54■■■□□ 2
SEC13-213ENST00000445064 WRNQ14191 1432 aaPredicted RBP eCLIP27.53■■■□□ 2
SEC13-213ENST00000445064 TOP2BQ02880 1626 aa27.46■■□□□ 1.99
SEC13-213ENST00000445064 BIVM-ERCC5R4GMW8 1640 aa27.45■■□□□ 1.99
SEC13-213ENST00000445064 GRIN2AQ12879 1464 aa27.38■■□□□ 1.97
SEC13-213ENST00000445064 ADAMTS12P58397 1594 aa27.33■■□□□ 1.97
SEC13-213ENST00000445064 FHAD1B1AJZ9 1412 aa27.31■■□□□ 1.96
SEC13-213ENST00000445064 CEP170Q5SW79 1584 aa27.28■■□□□ 1.96
SEC13-213ENST00000445064 NUP160Q12769 1436 aa27.27■■□□□ 1.96
SEC13-213ENST00000445064 ERCC6L2Q5T890 1561 aa27.26■■□□□ 1.95
SEC13-213ENST00000445064 ERICH3Q5RHP9 1530 aa27.26■■□□□ 1.95
SEC13-213ENST00000445064 SHROOM2Q13796 1616 aa27.12■■□□□ 1.93
SEC13-213ENST00000445064 JPH4Q96JJ6 628 aa27.1■■□□□ 1.93
SEC13-213ENST00000445064 PRG4Q92954 1404 aaPredicted RBP27.07■■□□□ 1.92
SEC13-213ENST00000445064 IGF1RP08069 1367 aa26.99■■□□□ 1.91
SEC13-213ENST00000445064 KIF27Q86VH2 1401 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms