RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 NISCHQ9Y2I1 1504 aa41.31■■■■■ 4.2
LIME1-202ENST00000444951 ABCC9O60706 1549 aa37.02■■■■□ 3.52
LIME1-202ENST00000444951 CCDC180Q9P1Z9 1646 aa37.02■■■■□ 3.52
LIME1-202ENST00000444951 RB1CC1Q8TDY2 1594 aa35.19■■■■□ 3.22
LIME1-202ENST00000444951 NACADO15069 1562 aa34.96■■■■□ 3.19
LIME1-202ENST00000444951 DCAF8L2P0C7V8 631 aa34.79■■■■□ 3.16
LIME1-202ENST00000444951 DNAJC5BQ9UF47 199 aa34.73■■■■□ 3.15
LIME1-202ENST00000444951 UNC13AQ9UPW8 1703 aa34.51■■■■□ 3.12
LIME1-202ENST00000444951 PABPN1Q86U42 306 aaKnown RBP eCLIP34.48■■■■□ 3.11
LIME1-202ENST00000444951 MYO15BQ96JP2 1530 aa34.48■■■■□ 3.11
LIME1-202ENST00000444951 BICRAQ9NZM4 1560 aa34.27■■■■□ 3.08
LIME1-202ENST00000444951 ZCCHC6Q5VYS8 1495 aaKnown RBP34.27■■■■□ 3.08
LIME1-202ENST00000444951 DCAF1Q9Y4B6 1507 aa34.08■■■■□ 3.05
LIME1-202ENST00000444951 SCRIBQ14160 1630 aa33.81■■■■□ 3
LIME1-202ENST00000444951 SHROOM4Q9ULL8 1493 aa33.66■■■□□ 2.98
LIME1-202ENST00000444951 CC2D2AQ9P2K1 1620 aa33.43■■■□□ 2.94
LIME1-202ENST00000444951 EIF4G1Q04637 1599 aaKnown RBP33.37■■■□□ 2.93
LIME1-202ENST00000444951 CECR2Q9BXF3 1484 aa33.31■■■□□ 2.92
LIME1-202ENST00000444951 NCAPD3P42695 1498 aa32.29■■■□□ 2.76
LIME1-202ENST00000444951 ATAD2BQ9ULI0 1458 aa32.23■■■□□ 2.75
LIME1-202ENST00000444951 SMARCA4P51532 1647 aa32.23■■■□□ 2.75
LIME1-202ENST00000444951 SMARCA2P51531 1590 aa32.09■■■□□ 2.73
LIME1-202ENST00000444951 HMGXB3Q12766 1538 aa32.06■■■□□ 2.72
LIME1-202ENST00000444951 BAZ1AQ9NRL2 1556 aaPredicted RBP32.02■■■□□ 2.72
LIME1-202ENST00000444951 BAZ1BQ9UIG0 1483 aaKnown RBP31.9■■■□□ 2.7
LIME1-202ENST00000444951 ERCC6Q03468 1493 aa31.89■■■□□ 2.7
LIME1-202ENST00000444951 PEG3Q9GZU2 1588 aa31.89■■■□□ 2.7
LIME1-202ENST00000444951 MROH2BQ7Z745 1585 aa31.88■■■□□ 2.69
LIME1-202ENST00000444951 NESP48681 1621 aa31.86■■■□□ 2.69
LIME1-202ENST00000444951 CUX2O14529 1486 aa31.8■■■□□ 2.68
LIME1-202ENST00000444951 DNAJC5Q9H3Z4 198 aa31.73■■■□□ 2.67
LIME1-202ENST00000444951 LAMC3Q9Y6N6 1575 aa31.54■■■□□ 2.64
LIME1-202ENST00000444951 WIZO95785 1651 aa31.51■■■□□ 2.63
LIME1-202ENST00000444951 THOC2Q8NI27 1593 aaKnown RBP31.5■■■□□ 2.63
LIME1-202ENST00000444951 KIF21AQ7Z4S6 1674 aa31.43■■■□□ 2.62
LIME1-202ENST00000444951 PDS5BQ9NTI5 1447 aa31.32■■■□□ 2.61
LIME1-202ENST00000444951 CADPSQ9ULU8 1353 aa31.3■■■□□ 2.6
LIME1-202ENST00000444951 RSF1Q96T23 1441 aaPredicted RBP31.21■■■□□ 2.59
LIME1-202ENST00000444951 MRC2Q9UBG0 1479 aa31.11■■■□□ 2.57
LIME1-202ENST00000444951 TOP2AP11388 1531 aaKnown RBP31.07■■■□□ 2.56
LIME1-202ENST00000444951 WDR62O43379 1518 aa31.04■■■□□ 2.56
LIME1-202ENST00000444951 CFTRP13569 1480 aa30.98■■■□□ 2.55
LIME1-202ENST00000444951 FANCD2Q9BXW9 1451 aa30.98■■■□□ 2.55
LIME1-202ENST00000444951 CEP164Q9UPV0 1460 aa30.98■■■□□ 2.55
LIME1-202ENST00000444951 SUPT5HO00267 1087 aaKnown RBP30.93■■■□□ 2.54
LIME1-202ENST00000444951 URB2Q14146 1524 aaKnown RBP30.77■■■□□ 2.52
LIME1-202ENST00000444951 CCDC88BA6NC98 1476 aa30.73■■■□□ 2.51
LIME1-202ENST00000444951 PRDM2Q13029 1718 aa30.7■■■□□ 2.5
LIME1-202ENST00000444951 TOPBP1Q92547 1522 aa30.42■■■□□ 2.46
LIME1-202ENST00000444951 ZNF608Q9ULD9 1512 aaPredicted RBP30.39■■■□□ 2.46
LIME1-202ENST00000444951 TRIM41Q8WV44 630 aa30.39■■■□□ 2.46
LIME1-202ENST00000444951 IFT140Q96RY7 1462 aa30.35■■■□□ 2.45
LIME1-202ENST00000444951 OSCARQ8IYS5 282 aa30.33■■■□□ 2.45
LIME1-202ENST00000444951 DNMBPQ6XZF7 1577 aa30.29■■■□□ 2.44
LIME1-202ENST00000444951 ABCC8Q09428 1581 aa30.24■■■□□ 2.43
LIME1-202ENST00000444951 EIF4G3O43432 1585 aaKnown RBP30.2■■■□□ 2.42
LIME1-202ENST00000444951 TARBP1Q13395 1621 aaKnown RBP30.16■■■□□ 2.42
LIME1-202ENST00000444951 POLA1P09884 1462 aaPredicted RBP30.12■■■□□ 2.41
LIME1-202ENST00000444951 AQRO60306 1485 aaKnown RBP eCLIP30.09■■■□□ 2.416e-6■■■■□ 25.1
LIME1-202ENST00000444951 RIMBP3CA6NJZ7 1639 aa30.04■■■□□ 2.4
LIME1-202ENST00000444951 RIMBP3BA6NNM3 1639 aa30.04■■■□□ 2.4
LIME1-202ENST00000444951 RIMBP3Q9UFD9 1639 aa30.04■■■□□ 2.4
LIME1-202ENST00000444951 RAD54L2Q9Y4B4 1467 aa30.03■■■□□ 2.4
LIME1-202ENST00000444951 CHD1O14646 1710 aa29.98■■■□□ 2.39
LIME1-202ENST00000444951 CUX1P39880 1505 aa29.95■■■□□ 2.38
LIME1-202ENST00000444951 SOGA1O94964 1423 aa29.94■■■□□ 2.38
LIME1-202ENST00000444951 FGD5Q6ZNL6 1462 aa29.93■■■□□ 2.38
LIME1-202ENST00000444951 ARHGEF11O15085 1522 aa29.93■■■□□ 2.38
LIME1-202ENST00000444951 TDRD9Q8NDG6 1382 aaKnown RBP29.9■■■□□ 2.38
LIME1-202ENST00000444951 FBLN2P98095 1184 aa29.82■■■□□ 2.36
LIME1-202ENST00000444951 SNAPC4Q5SXM2 1469 aa29.79■■■□□ 2.36
LIME1-202ENST00000444951 WDR97A6NE52 1622 aa29.76■■■□□ 2.35
LIME1-202ENST00000444951 ARAP1Q96P48 1450 aa29.68■■■□□ 2.34
LIME1-202ENST00000444951 CYB5RLQ6IPT4 315 aa29.67■■■□□ 2.34
LIME1-202ENST00000444951 GRIN2BQ13224 1484 aa29.67■■■□□ 2.34
LIME1-202ENST00000444951 MAGI1Q96QZ7 1491 aaPredicted RBP29.65■■■□□ 2.34
LIME1-202ENST00000444951 CLASP1Q7Z460 1538 aa29.63■■■□□ 2.33
LIME1-202ENST00000444951 PBRM1Q86U86 1689 aa29.61■■■□□ 2.33
LIME1-202ENST00000444951 CHMP7Q8WUX9 453 aaPredicted RBP29.58■■■□□ 2.33
LIME1-202ENST00000444951 ABCA10Q8WWZ4 1543 aa29.57■■■□□ 2.32
LIME1-202ENST00000444951 GAPVD1Q14C86 1478 aa29.57■■■□□ 2.32
LIME1-202ENST00000444951 ABCA5Q8WWZ7 1642 aa29.56■■■□□ 2.32
LIME1-202ENST00000444951 SYNJ2O15056 1496 aa29.56■■■□□ 2.32
LIME1-202ENST00000444951 SYNJ1O43426 1573 aa29.55■■■□□ 2.32
LIME1-202ENST00000444951 BIVM-ERCC5R4GMW8 1640 aa29.45■■■□□ 2.31
LIME1-202ENST00000444951 TOP2BQ02880 1626 aa29.44■■■□□ 2.3
LIME1-202ENST00000444951 WRNQ14191 1432 aaPredicted RBP eCLIP29.43■■■□□ 2.3
LIME1-202ENST00000444951 ADAMTS12P58397 1594 aa29.33■■■□□ 2.29
LIME1-202ENST00000444951 GRIN2AQ12879 1464 aa29.3■■■□□ 2.28
LIME1-202ENST00000444951 TRHP20396 242 aaPredicted RBP29.29■■■□□ 2.28
LIME1-202ENST00000444951 CEP170Q5SW79 1584 aa29.26■■■□□ 2.27
LIME1-202ENST00000444951 ERCC6L2Q5T890 1561 aa29.24■■■□□ 2.27
LIME1-202ENST00000444951 NUP160Q12769 1436 aa29.21■■■□□ 2.27
LIME1-202ENST00000444951 FHAD1B1AJZ9 1412 aa29.2■■■□□ 2.26
LIME1-202ENST00000444951 ERICH3Q5RHP9 1530 aa29.18■■■□□ 2.26
LIME1-202ENST00000444951 CHIC1Q5VXU3 224 aa29.11■■■□□ 2.25
LIME1-202ENST00000444951 SHROOM2Q13796 1616 aa29.09■■■□□ 2.25
LIME1-202ENST00000444951 RUSC2Q8N2Y8 1516 aa28.92■■■□□ 2.22
LIME1-202ENST00000444951 PRG4Q92954 1404 aaPredicted RBP28.92■■■□□ 2.22
LIME1-202ENST00000444951 JPH4Q96JJ6 628 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms