RNA–Protein interactions for RNA: ENST00000443790.1

EDEM1-203, Transcript of ER degradation enhancing alpha-mannosidase like protein 1, humanhuman

TSL 2

Gene EDEM1, Length 730 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM1-203ENST00000443790 NISCHQ9Y2I1 1504 aa49.9■■■■■ 5.58
EDEM1-203ENST00000443790 CCDC180Q9P1Z9 1646 aa44.79■■■■■ 4.76
EDEM1-203ENST00000443790 ABCC9O60706 1549 aa44.71■■■■■ 4.75
EDEM1-203ENST00000443790 RB1CC1Q8TDY2 1594 aa42.6■■■■■ 4.41
EDEM1-203ENST00000443790 NACADO15069 1562 aa42.31■■■■■ 4.36
EDEM1-203ENST00000443790 DCAF8L2P0C7V8 631 aa42■■■■■ 4.31
EDEM1-203ENST00000443790 DNAJC5BQ9UF47 199 aa41.87■■■■■ 4.29
EDEM1-203ENST00000443790 MYO15BQ96JP2 1530 aa41.77■■■■■ 4.28
EDEM1-203ENST00000443790 UNC13AQ9UPW8 1703 aa41.63■■■■■ 4.25
EDEM1-203ENST00000443790 PABPN1Q86U42 306 aaKnown RBP eCLIP41.59■■■■■ 4.25
EDEM1-203ENST00000443790 ZCCHC6Q5VYS8 1495 aaKnown RBP41.39■■■■■ 4.22
EDEM1-203ENST00000443790 BICRAQ9NZM4 1560 aa41.37■■■■■ 4.21
EDEM1-203ENST00000443790 DCAF1Q9Y4B6 1507 aa41.24■■■■■ 4.19
EDEM1-203ENST00000443790 SHROOM4Q9ULL8 1493 aa40.85■■■■■ 4.13
EDEM1-203ENST00000443790 SCRIBQ14160 1630 aa40.78■■■■■ 4.12
EDEM1-203ENST00000443790 CC2D2AQ9P2K1 1620 aa40.41■■■■■ 4.06
EDEM1-203ENST00000443790 EIF4G1Q04637 1599 aaKnown RBP40.35■■■■■ 4.05
EDEM1-203ENST00000443790 CECR2Q9BXF3 1484 aa40.28■■■■■ 4.04
EDEM1-203ENST00000443790 NCAPD3P42695 1498 aa39.06■■■■□ 3.84
EDEM1-203ENST00000443790 ATAD2BQ9ULI0 1458 aa38.94■■■■□ 3.82
EDEM1-203ENST00000443790 SMARCA4P51532 1647 aa38.93■■■■□ 3.82
EDEM1-203ENST00000443790 SMARCA2P51531 1590 aa38.85■■■■□ 3.81
EDEM1-203ENST00000443790 HMGXB3Q12766 1538 aa38.8■■■■□ 3.8
EDEM1-203ENST00000443790 BAZ1AQ9NRL2 1556 aaPredicted RBP38.74■■■■□ 3.79
EDEM1-203ENST00000443790 ERCC6Q03468 1493 aa38.6■■■■□ 3.77
EDEM1-203ENST00000443790 BAZ1BQ9UIG0 1483 aaKnown RBP38.57■■■■□ 3.76
EDEM1-203ENST00000443790 PEG3Q9GZU2 1588 aa38.57■■■■□ 3.76
EDEM1-203ENST00000443790 CUX2O14529 1486 aa38.55■■■■□ 3.76
EDEM1-203ENST00000443790 DNAJC5Q9H3Z4 198 aa38.47■■■■□ 3.75
EDEM1-203ENST00000443790 MROH2BQ7Z745 1585 aa38.44■■■■□ 3.74
EDEM1-203ENST00000443790 NESP48681 1621 aa38.42■■■■□ 3.74
EDEM1-203ENST00000443790 LAMC3Q9Y6N6 1575 aa38.19■■■■□ 3.7
EDEM1-203ENST00000443790 THOC2Q8NI27 1593 aaKnown RBP38.07■■■■□ 3.69
EDEM1-203ENST00000443790 WIZO95785 1651 aa37.98■■■■□ 3.67
EDEM1-203ENST00000443790 KIF21AQ7Z4S6 1674 aa37.95■■■■□ 3.66
EDEM1-203ENST00000443790 PDS5BQ9NTI5 1447 aa37.94■■■■□ 3.66
EDEM1-203ENST00000443790 CADPSQ9ULU8 1353 aa37.86■■■■□ 3.65
EDEM1-203ENST00000443790 RSF1Q96T23 1441 aaPredicted RBP37.65■■■■□ 3.62
EDEM1-203ENST00000443790 MRC2Q9UBG0 1479 aa37.64■■■■□ 3.62
EDEM1-203ENST00000443790 WDR62O43379 1518 aa37.56■■■■□ 3.6
EDEM1-203ENST00000443790 TOP2AP11388 1531 aaKnown RBP37.52■■■■□ 3.6
EDEM1-203ENST00000443790 CEP164Q9UPV0 1460 aa37.49■■■■□ 3.59
EDEM1-203ENST00000443790 CFTRP13569 1480 aa37.45■■■■□ 3.59
EDEM1-203ENST00000443790 FANCD2Q9BXW9 1451 aa37.44■■■■□ 3.58
EDEM1-203ENST00000443790 URB2Q14146 1524 aaKnown RBP37.14■■■■□ 3.54
EDEM1-203ENST00000443790 PRDM2Q13029 1718 aa37.1■■■■□ 3.53
EDEM1-203ENST00000443790 CCDC88BA6NC98 1476 aa37.07■■■■□ 3.52
EDEM1-203ENST00000443790 TRIM41Q8WV44 630 aa36.74■■■■□ 3.47
EDEM1-203ENST00000443790 IFT140Q96RY7 1462 aa36.74■■■■□ 3.47
EDEM1-203ENST00000443790 TOPBP1Q92547 1522 aa36.74■■■■□ 3.47
EDEM1-203ENST00000443790 OSCARQ8IYS5 282 aa36.73■■■■□ 3.47
EDEM1-203ENST00000443790 ZNF608Q9ULD9 1512 aaPredicted RBP36.66■■■■□ 3.46
EDEM1-203ENST00000443790 ABCC8Q09428 1581 aa36.66■■■■□ 3.46
EDEM1-203ENST00000443790 DNMBPQ6XZF7 1577 aa36.62■■■■□ 3.45
EDEM1-203ENST00000443790 EIF4G3O43432 1585 aaKnown RBP36.49■■■■□ 3.43
EDEM1-203ENST00000443790 TARBP1Q13395 1621 aaKnown RBP36.42■■■■□ 3.42
EDEM1-203ENST00000443790 POLA1P09884 1462 aaPredicted RBP36.37■■■■□ 3.41
EDEM1-203ENST00000443790 AQRO60306 1485 aaKnown RBP eCLIP36.31■■■■□ 3.4
EDEM1-203ENST00000443790 RIMBP3CA6NJZ7 1639 aa36.3■■■■□ 3.4
EDEM1-203ENST00000443790 RIMBP3BA6NNM3 1639 aa36.3■■■■□ 3.4
EDEM1-203ENST00000443790 RIMBP3Q9UFD9 1639 aa36.3■■■■□ 3.4
EDEM1-203ENST00000443790 RAD54L2Q9Y4B4 1467 aa36.21■■■■□ 3.39
EDEM1-203ENST00000443790 ARHGEF11O15085 1522 aa36.2■■■■□ 3.39
EDEM1-203ENST00000443790 CHD1O14646 1710 aa36.2■■■■□ 3.38
EDEM1-203ENST00000443790 SOGA1O94964 1423 aa36.17■■■■□ 3.38
EDEM1-203ENST00000443790 FGD5Q6ZNL6 1462 aa36.15■■■■□ 3.38
EDEM1-203ENST00000443790 CUX1P39880 1505 aa36.13■■■■□ 3.37
EDEM1-203ENST00000443790 TDRD9Q8NDG6 1382 aaKnown RBP36.09■■■■□ 3.37
EDEM1-203ENST00000443790 WDR97A6NE52 1622 aa36.08■■■■□ 3.37
EDEM1-203ENST00000443790 FBLN2P98095 1184 aa36.03■■■■□ 3.36
EDEM1-203ENST00000443790 SNAPC4Q5SXM2 1469 aa35.99■■■■□ 3.35
EDEM1-203ENST00000443790 SUPT5HO00267 1087 aaKnown RBP35.94■■■■□ 3.34
EDEM1-203ENST00000443790 MAGI1Q96QZ7 1491 aaPredicted RBP35.89■■■■□ 3.34
EDEM1-203ENST00000443790 GRIN2BQ13224 1484 aa35.88■■■■□ 3.33
EDEM1-203ENST00000443790 CYB5RLQ6IPT4 315 aa35.86■■■■□ 3.33
EDEM1-203ENST00000443790 ARAP1Q96P48 1450 aa35.86■■■■□ 3.33
EDEM1-203ENST00000443790 CLASP1Q7Z460 1538 aa35.8■■■■□ 3.32
EDEM1-203ENST00000443790 CHMP7Q8WUX9 453 aaPredicted RBP35.79■■■■□ 3.32
EDEM1-203ENST00000443790 SYNJ1O43426 1573 aa35.77■■■■□ 3.32
EDEM1-203ENST00000443790 SYNJ2O15056 1496 aa35.77■■■■□ 3.32
EDEM1-203ENST00000443790 PBRM1Q86U86 1689 aa35.76■■■■□ 3.32
EDEM1-203ENST00000443790 GAPVD1Q14C86 1478 aa35.75■■■■□ 3.31
EDEM1-203ENST00000443790 ABCA10Q8WWZ4 1543 aa35.74■■■■□ 3.31
EDEM1-203ENST00000443790 ABCA5Q8WWZ7 1642 aa35.71■■■■□ 3.31
EDEM1-203ENST00000443790 WRNQ14191 1432 aaPredicted RBP eCLIP35.58■■■■□ 3.29
EDEM1-203ENST00000443790 BIVM-ERCC5R4GMW8 1640 aa35.57■■■■□ 3.28
EDEM1-203ENST00000443790 TOP2BQ02880 1626 aa35.56■■■■□ 3.28
EDEM1-203ENST00000443790 TRHP20396 242 aaPredicted RBP35.45■■■■□ 3.27
EDEM1-203ENST00000443790 ADAMTS12P58397 1594 aa35.44■■■■□ 3.26
EDEM1-203ENST00000443790 GRIN2AQ12879 1464 aa35.43■■■■□ 3.26
EDEM1-203ENST00000443790 NUP160Q12769 1436 aa35.32■■■■□ 3.24
EDEM1-203ENST00000443790 CEP170Q5SW79 1584 aa35.31■■■■□ 3.24
EDEM1-203ENST00000443790 FHAD1B1AJZ9 1412 aa35.31■■■■□ 3.24
EDEM1-203ENST00000443790 ERICH3Q5RHP9 1530 aa35.3■■■■□ 3.24
EDEM1-203ENST00000443790 ERCC6L2Q5T890 1561 aa35.23■■■■□ 3.23
EDEM1-203ENST00000443790 SHROOM2Q13796 1616 aa35.17■■■■□ 3.22
EDEM1-203ENST00000443790 RUSC2Q8N2Y8 1516 aa34.95■■■■□ 3.19
EDEM1-203ENST00000443790 PRG4Q92954 1404 aaPredicted RBP34.94■■■■□ 3.18
EDEM1-203ENST00000443790 JPH4Q96JJ6 628 aa34.89■■■■□ 3.18
EDEM1-203ENST00000443790 KIF27Q86VH2 1401 aa34.84■■■■□ 3.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms