RNA–Protein interactions for RNA: ENST00000443780.5

UBE2D4-205, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 743 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-205ENST00000443780 NISCHQ9Y2I1 1504 aa50.31■■■■■ 5.64
UBE2D4-205ENST00000443780 CCDC180Q9P1Z9 1646 aa44.95■■■■■ 4.79
UBE2D4-205ENST00000443780 ABCC9O60706 1549 aa44.32■■■■■ 4.69
UBE2D4-205ENST00000443780 RB1CC1Q8TDY2 1594 aa42.48■■■■■ 4.39
UBE2D4-205ENST00000443780 NACADO15069 1562 aa42.32■■■■■ 4.37
UBE2D4-205ENST00000443780 DCAF8L2P0C7V8 631 aa42.18■■■■■ 4.34
UBE2D4-205ENST00000443780 MYO15BQ96JP2 1530 aa41.92■■■■■ 4.3
UBE2D4-205ENST00000443780 ZCCHC6Q5VYS8 1495 aaKnown RBP41.8■■■■■ 4.28
UBE2D4-205ENST00000443780 UNC13AQ9UPW8 1703 aa41.62■■■■■ 4.25
UBE2D4-205ENST00000443780 DCAF1Q9Y4B6 1507 aa41.59■■■■■ 4.25
UBE2D4-205ENST00000443780 PABPN1Q86U42 306 aaKnown RBP eCLIP41.34■■■■■ 4.21
UBE2D4-205ENST00000443780 BICRAQ9NZM4 1560 aa41.23■■■■■ 4.19
UBE2D4-205ENST00000443780 DNAJC5BQ9UF47 199 aa41.07■■■■■ 4.17
UBE2D4-205ENST00000443780 SCRIBQ14160 1630 aa40.95■■■■■ 4.15
UBE2D4-205ENST00000443780 SHROOM4Q9ULL8 1493 aa40.7■■■■■ 4.11
UBE2D4-205ENST00000443780 EIF4G1Q04637 1599 aaKnown RBP40.15■■■■■ 4.02
UBE2D4-205ENST00000443780 CC2D2AQ9P2K1 1620 aa40.11■■■■■ 4.01
UBE2D4-205ENST00000443780 CECR2Q9BXF3 1484 aa39.87■■■■□ 3.97
UBE2D4-205ENST00000443780 SMARCA4P51532 1647 aa39.14■■■■□ 3.86
UBE2D4-205ENST00000443780 NCAPD3P42695 1498 aa39.05■■■■□ 3.84
UBE2D4-205ENST00000443780 BAZ1AQ9NRL2 1556 aaPredicted RBP39.01■■■■□ 3.84
UBE2D4-205ENST00000443780 ATAD2BQ9ULI0 1458 aa39■■■■□ 3.83
UBE2D4-205ENST00000443780 SMARCA2P51531 1590 aa38.95■■■■□ 3.83
UBE2D4-205ENST00000443780 HMGXB3Q12766 1538 aa38.82■■■■□ 3.8
UBE2D4-205ENST00000443780 MROH2BQ7Z745 1585 aa38.77■■■■□ 3.8
UBE2D4-205ENST00000443780 PEG3Q9GZU2 1588 aa38.75■■■■□ 3.79
UBE2D4-205ENST00000443780 BAZ1BQ9UIG0 1483 aaKnown RBP38.66■■■■□ 3.78
UBE2D4-205ENST00000443780 WIZO95785 1651 aa38.36■■■■□ 3.73
UBE2D4-205ENST00000443780 NESP48681 1621 aa38.25■■■■□ 3.71
UBE2D4-205ENST00000443780 ERCC6Q03468 1493 aa38.22■■■■□ 3.71
UBE2D4-205ENST00000443780 RSF1Q96T23 1441 aaPredicted RBP38.16■■■■□ 3.7
UBE2D4-205ENST00000443780 LAMC3Q9Y6N6 1575 aa38.1■■■■□ 3.69
UBE2D4-205ENST00000443780 CUX2O14529 1486 aa37.97■■■■□ 3.67
UBE2D4-205ENST00000443780 TOP2AP11388 1531 aaKnown RBP37.89■■■■□ 3.66
UBE2D4-205ENST00000443780 CADPSQ9ULU8 1353 aa37.88■■■■□ 3.65
UBE2D4-205ENST00000443780 KIF21AQ7Z4S6 1674 aa37.85■■■■□ 3.65
UBE2D4-205ENST00000443780 PDS5BQ9NTI5 1447 aa37.82■■■■□ 3.64
UBE2D4-205ENST00000443780 THOC2Q8NI27 1593 aaKnown RBP37.77■■■■□ 3.64
UBE2D4-205ENST00000443780 CFTRP13569 1480 aa37.57■■■■□ 3.6
UBE2D4-205ENST00000443780 MRC2Q9UBG0 1479 aa37.47■■■■□ 3.59
UBE2D4-205ENST00000443780 CCDC88BA6NC98 1476 aa37.45■■■■□ 3.59
UBE2D4-205ENST00000443780 FANCD2Q9BXW9 1451 aa37.45■■■■□ 3.59
UBE2D4-205ENST00000443780 CEP164Q9UPV0 1460 aa37.44■■■■□ 3.58
UBE2D4-205ENST00000443780 WDR62O43379 1518 aa37.37■■■■□ 3.57
UBE2D4-205ENST00000443780 PRDM2Q13029 1718 aa37.37■■■■□ 3.57
UBE2D4-205ENST00000443780 DNAJC5Q9H3Z4 198 aa37.3■■■■□ 3.56
UBE2D4-205ENST00000443780 URB2Q14146 1524 aaKnown RBP37.11■■■■□ 3.53
UBE2D4-205ENST00000443780 SUPT5HO00267 1087 aaKnown RBP36.88■■■■□ 3.49
UBE2D4-205ENST00000443780 TOPBP1Q92547 1522 aa36.81■■■■□ 3.48
UBE2D4-205ENST00000443780 ABCC8Q09428 1581 aa36.78■■■■□ 3.48
UBE2D4-205ENST00000443780 DNMBPQ6XZF7 1577 aa36.74■■■■□ 3.47
UBE2D4-205ENST00000443780 IFT140Q96RY7 1462 aa36.66■■■■□ 3.46
UBE2D4-205ENST00000443780 ZNF608Q9ULD9 1512 aaPredicted RBP36.55■■■■□ 3.44
UBE2D4-205ENST00000443780 TARBP1Q13395 1621 aaKnown RBP36.48■■■■□ 3.43
UBE2D4-205ENST00000443780 POLA1P09884 1462 aaPredicted RBP36.47■■■■□ 3.43
UBE2D4-205ENST00000443780 EIF4G3O43432 1585 aaKnown RBP36.4■■■■□ 3.42
UBE2D4-205ENST00000443780 CUX1P39880 1505 aa36.39■■■■□ 3.42
UBE2D4-205ENST00000443780 OSCARQ8IYS5 282 aa36.33■■■■□ 3.41
UBE2D4-205ENST00000443780 FGD5Q6ZNL6 1462 aa36.32■■■■□ 3.41
UBE2D4-205ENST00000443780 RAD54L2Q9Y4B4 1467 aa36.32■■■■□ 3.41
UBE2D4-205ENST00000443780 SOGA1O94964 1423 aa36.31■■■■□ 3.4
UBE2D4-205ENST00000443780 AQRO60306 1485 aaKnown RBP eCLIP36.29■■■■□ 3.4
UBE2D4-205ENST00000443780 TDRD9Q8NDG6 1382 aaKnown RBP36.15■■■■□ 3.38
UBE2D4-205ENST00000443780 WDR97A6NE52 1622 aa36.14■■■■□ 3.38
UBE2D4-205ENST00000443780 CHD1O14646 1710 aa36.08■■■■□ 3.37
UBE2D4-205ENST00000443780 BIVM-ERCC5R4GMW8 1640 aa36■■■■□ 3.35
UBE2D4-205ENST00000443780 WRNQ14191 1432 aaPredicted RBP eCLIP35.99■■■■□ 3.35
UBE2D4-205ENST00000443780 TOP2BQ02880 1626 aa35.98■■■■□ 3.35
UBE2D4-205ENST00000443780 SYNJ1O43426 1573 aa35.95■■■■□ 3.35
UBE2D4-205ENST00000443780 ABCA10Q8WWZ4 1543 aa35.94■■■■□ 3.34
UBE2D4-205ENST00000443780 SNAPC4Q5SXM2 1469 aa35.93■■■■□ 3.34
UBE2D4-205ENST00000443780 GRIN2BQ13224 1484 aa35.92■■■■□ 3.34
UBE2D4-205ENST00000443780 FBLN2P98095 1184 aa35.92■■■■□ 3.34
UBE2D4-205ENST00000443780 PBRM1Q86U86 1689 aa35.91■■■■□ 3.34
UBE2D4-205ENST00000443780 GAPVD1Q14C86 1478 aa35.89■■■■□ 3.34
UBE2D4-205ENST00000443780 TRIM41Q8WV44 630 aa35.89■■■■□ 3.34
UBE2D4-205ENST00000443780 MAGI1Q96QZ7 1491 aaPredicted RBP35.88■■■■□ 3.33
UBE2D4-205ENST00000443780 ABCA5Q8WWZ7 1642 aa35.86■■■■□ 3.33
UBE2D4-205ENST00000443780 RIMBP3CA6NJZ7 1639 aa35.83■■■■□ 3.33
UBE2D4-205ENST00000443780 RIMBP3BA6NNM3 1639 aa35.83■■■■□ 3.33
UBE2D4-205ENST00000443780 RIMBP3Q9UFD9 1639 aa35.83■■■■□ 3.33
UBE2D4-205ENST00000443780 CHMP7Q8WUX9 453 aaPredicted RBP35.76■■■■□ 3.32
UBE2D4-205ENST00000443780 SYNJ2O15056 1496 aa35.75■■■■□ 3.31
UBE2D4-205ENST00000443780 ARHGEF11O15085 1522 aa35.75■■■■□ 3.31
UBE2D4-205ENST00000443780 CLASP1Q7Z460 1538 aa35.62■■■■□ 3.29
UBE2D4-205ENST00000443780 ADAMTS12P58397 1594 aa35.54■■■■□ 3.28
UBE2D4-205ENST00000443780 ERICH3Q5RHP9 1530 aa35.52■■■■□ 3.28
UBE2D4-205ENST00000443780 GRIN2AQ12879 1464 aa35.48■■■■□ 3.27
UBE2D4-205ENST00000443780 FHAD1B1AJZ9 1412 aa35.44■■■■□ 3.26
UBE2D4-205ENST00000443780 CYB5RLQ6IPT4 315 aa35.44■■■■□ 3.26
UBE2D4-205ENST00000443780 ARAP1Q96P48 1450 aa35.43■■■■□ 3.26
UBE2D4-205ENST00000443780 CEP170Q5SW79 1584 aa35.34■■■■□ 3.25
UBE2D4-205ENST00000443780 NUP160Q12769 1436 aa35.33■■■■□ 3.25
UBE2D4-205ENST00000443780 KIF27Q86VH2 1401 aa35.26■■■■□ 3.24
UBE2D4-205ENST00000443780 IGF1RP08069 1367 aa35.18■■■■□ 3.22
UBE2D4-205ENST00000443780 SHROOM2Q13796 1616 aa35.15■■■■□ 3.22
UBE2D4-205ENST00000443780 CUL7Q14999 1698 aa35.14■■■■□ 3.22
UBE2D4-205ENST00000443780 ERCC6L2Q5T890 1561 aa35.11■■■■□ 3.21
UBE2D4-205ENST00000443780 RUSC2Q8N2Y8 1516 aa35.03■■■■□ 3.2
UBE2D4-205ENST00000443780 JPH4Q96JJ6 628 aa34.96■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms