RNA–Protein interactions for RNA: ENST00000442679.5

USP1-203, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 2

Gene USP1, Length 502 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-203ENST00000442679 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
USP1-203ENST00000442679 CCDC180Q9P1Z9 1646 aa26.16■■□□□ 1.78
USP1-203ENST00000442679 ABCC9O60706 1549 aa25.57■■□□□ 1.68
USP1-203ENST00000442679 DCAF8L2P0C7V8 631 aa24.78■■□□□ 1.56
USP1-203ENST00000442679 ZCCHC6Q5VYS8 1495 aaKnown RBP24.64■■□□□ 1.54
USP1-203ENST00000442679 NACADO15069 1562 aa24.61■■□□□ 1.53
USP1-203ENST00000442679 RB1CC1Q8TDY2 1594 aa24.61■■□□□ 1.53
USP1-203ENST00000442679 MYO15BQ96JP2 1530 aa24.5■■□□□ 1.51
USP1-203ENST00000442679 DCAF1Q9Y4B6 1507 aa24.45■■□□□ 1.5
USP1-203ENST00000442679 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.43
USP1-203ENST00000442679 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
USP1-203ENST00000442679 SCRIBQ14160 1630 aa23.94■■□□□ 1.42
USP1-203ENST00000442679 BICRAQ9NZM4 1560 aa23.85■■□□□ 1.41
USP1-203ENST00000442679 SHROOM4Q9ULL8 1493 aa23.6■■□□□ 1.37
USP1-203ENST00000442679 DNAJC5BQ9UF47 199 aa23.39■■□□□ 1.33
USP1-203ENST00000442679 EIF4G1Q04637 1599 aaKnown RBP23.22■■□□□ 1.31
USP1-203ENST00000442679 CC2D2AQ9P2K1 1620 aa23.08■■□□□ 1.29
USP1-203ENST00000442679 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
USP1-203ENST00000442679 BAZ1AQ9NRL2 1556 aaPredicted RBP22.9■■□□□ 1.26
USP1-203ENST00000442679 SMARCA4P51532 1647 aa22.89■■□□□ 1.25
USP1-203ENST00000442679 MROH2BQ7Z745 1585 aa22.8■■□□□ 1.24
USP1-203ENST00000442679 AEBP2Q6ZN18 517 aaPredicted RBP22.77■■□□□ 1.24
USP1-203ENST00000442679 ATAD2BQ9ULI0 1458 aa22.77■■□□□ 1.24
USP1-203ENST00000442679 NCAPD3P42695 1498 aa22.74■■□□□ 1.23
USP1-203ENST00000442679 SMARCA2P51531 1590 aa22.72■■□□□ 1.23
USP1-203ENST00000442679 PEG3Q9GZU2 1588 aa22.65■■□□□ 1.22
USP1-203ENST00000442679 RSF1Q96T23 1441 aaPredicted RBP22.62■■□□□ 1.21
USP1-203ENST00000442679 HMGXB3Q12766 1538 aa22.59■■□□□ 1.21
USP1-203ENST00000442679 BAZ1BQ9UIG0 1483 aaKnown RBP22.59■■□□□ 1.21
USP1-203ENST00000442679 WIZO95785 1651 aa22.54■■□□□ 1.2
USP1-203ENST00000442679 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
USP1-203ENST00000442679 SUPT5HO00267 1087 aaKnown RBP22.22■■□□□ 1.15
USP1-203ENST00000442679 NESP48681 1621 aa22.16■■□□□ 1.14
USP1-203ENST00000442679 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
USP1-203ENST00000442679 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
USP1-203ENST00000442679 LAMC3Q9Y6N6 1575 aa22.08■■□□□ 1.12
USP1-203ENST00000442679 ERCC6Q03468 1493 aa22.03■■□□□ 1.12
USP1-203ENST00000442679 PDS5BQ9NTI5 1447 aa21.98■■□□□ 1.11
USP1-203ENST00000442679 CFTRP13569 1480 aa21.98■■□□□ 1.11
USP1-203ENST00000442679 FANCD2Q9BXW9 1451 aa21.83■■□□□ 1.09
USP1-203ENST00000442679 KIF21AQ7Z4S6 1674 aa21.83■■□□□ 1.09
USP1-203ENST00000442679 CEP164Q9UPV0 1460 aa21.78■■□□□ 1.08
USP1-203ENST00000442679 MRC2Q9UBG0 1479 aa21.72■■□□□ 1.07
USP1-203ENST00000442679 THOC2Q8NI27 1593 aaKnown RBP21.72■■□□□ 1.07
USP1-203ENST00000442679 CUX2O14529 1486 aa21.71■■□□□ 1.07
USP1-203ENST00000442679 PRDM2Q13029 1718 aa21.7■■□□□ 1.06
USP1-203ENST00000442679 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
USP1-203ENST00000442679 WDR62O43379 1518 aa21.62■■□□□ 1.05
USP1-203ENST00000442679 URB2Q14146 1524 aaKnown RBP21.6■■□□□ 1.05
USP1-203ENST00000442679 ABCC8Q09428 1581 aa21.5■■□□□ 1.03
USP1-203ENST00000442679 TOPBP1Q92547 1522 aa21.49■■□□□ 1.03
USP1-203ENST00000442679 DNMBPQ6XZF7 1577 aa21.45■■□□□ 1.02
USP1-203ENST00000442679 CUX1P39880 1505 aa21.37■■□□□ 1.01
USP1-203ENST00000442679 IFT140Q96RY7 1462 aa21.32■■□□□ 1
USP1-203ENST00000442679 POLA1P09884 1462 aaPredicted RBP21.32■■□□□ 1
USP1-203ENST00000442679 WRNQ14191 1432 aaPredicted RBP eCLIP21.31■■□□□ 1
USP1-203ENST00000442679 FGD5Q6ZNL6 1462 aa21.29■■□□□ 1
USP1-203ENST00000442679 SOGA1O94964 1423 aa21.28■■□□□ 1
USP1-203ENST00000442679 RAD54L2Q9Y4B4 1467 aa21.25■□□□□ 0.99
USP1-203ENST00000442679 ZNF608Q9ULD9 1512 aaPredicted RBP21.22■□□□□ 0.99
USP1-203ENST00000442679 SYNJ1O43426 1573 aa21.22■□□□□ 0.99
USP1-203ENST00000442679 TARBP1Q13395 1621 aaKnown RBP21.22■□□□□ 0.99
USP1-203ENST00000442679 TOP2BQ02880 1626 aa21.21■□□□□ 0.99
USP1-203ENST00000442679 BIVM-ERCC5R4GMW8 1640 aa21.18■□□□□ 0.98
USP1-203ENST00000442679 AQRO60306 1485 aaKnown RBP eCLIP21.15■□□□□ 0.984e-6■□□□□ 10.8
USP1-203ENST00000442679 TDRD9Q8NDG6 1382 aaKnown RBP21.15■□□□□ 0.98
USP1-203ENST00000442679 EIF4G3O43432 1585 aaKnown RBP21.1■□□□□ 0.97
USP1-203ENST00000442679 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
USP1-203ENST00000442679 WDR97A6NE52 1622 aa21.04■□□□□ 0.96
USP1-203ENST00000442679 GAPVD1Q14C86 1478 aa21.01■□□□□ 0.95
USP1-203ENST00000442679 GRIN2BQ13224 1484 aa20.99■□□□□ 0.95
USP1-203ENST00000442679 TRIM41Q8WV44 630 aa20.98■□□□□ 0.95
USP1-203ENST00000442679 DNAJC5Q9H3Z4 198 aa20.95■□□□□ 0.94
USP1-203ENST00000442679 ABCA5Q8WWZ7 1642 aa20.95■□□□□ 0.94
USP1-203ENST00000442679 SNAPC4Q5SXM2 1469 aa20.93■□□□□ 0.94
USP1-203ENST00000442679 FBLN2P98095 1184 aa20.92■□□□□ 0.94
USP1-203ENST00000442679 OSCARQ8IYS5 282 aa20.92■□□□□ 0.94
USP1-203ENST00000442679 MAGI1Q96QZ7 1491 aaPredicted RBP20.89■□□□□ 0.94
USP1-203ENST00000442679 CHMP7Q8WUX9 453 aaPredicted RBP20.88■□□□□ 0.93
USP1-203ENST00000442679 PBRM1Q86U86 1689 aa20.87■□□□□ 0.93
USP1-203ENST00000442679 KIF27Q86VH2 1401 aa20.87■□□□□ 0.93
USP1-203ENST00000442679 ERICH3Q5RHP9 1530 aa20.83■□□□□ 0.92
USP1-203ENST00000442679 SYNJ2O15056 1496 aa20.82■□□□□ 0.92
USP1-203ENST00000442679 IGF1RP08069 1367 aa20.79■□□□□ 0.92
USP1-203ENST00000442679 CHD1O14646 1710 aa20.78■□□□□ 0.92
USP1-203ENST00000442679 FHAD1B1AJZ9 1412 aa20.78■□□□□ 0.92
USP1-203ENST00000442679 ADAMTS12P58397 1594 aa20.74■□□□□ 0.91
USP1-203ENST00000442679 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
USP1-203ENST00000442679 GRIN2AQ12879 1464 aa20.69■□□□□ 0.9
USP1-203ENST00000442679 CARMIL1Q5VZK9 1371 aa20.67■□□□□ 0.9
USP1-203ENST00000442679 CUL7Q14999 1698 aa20.64■□□□□ 0.89
USP1-203ENST00000442679 NUP160Q12769 1436 aa20.6■□□□□ 0.89
USP1-203ENST00000442679 CLASP1Q7Z460 1538 aa20.59■□□□□ 0.89
USP1-203ENST00000442679 CEP170Q5SW79 1584 aa20.57■□□□□ 0.88
USP1-203ENST00000442679 CSRNP3Q8WYN3 585 aa20.57■□□□□ 0.88
USP1-203ENST00000442679 FAM9AQ8IZU1 332 aaPredicted RBP20.56■□□□□ 0.88
USP1-203ENST00000442679 EEA1Q15075 1411 aa20.54■□□□□ 0.88
USP1-203ENST00000442679 RAPGEF2Q9Y4G8 1499 aa20.53■□□□□ 0.88
USP1-203ENST00000442679 ARHGEF11O15085 1522 aa20.5■□□□□ 0.87
USP1-203ENST00000442679 PRXQ9BXM0 1461 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms