RNA–Protein interactions for RNA: ENST00000440899.5

UBE2D4-204, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 5

Gene UBE2D4, Length 1,040 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-204ENST00000440899 NISCHQ9Y2I1 1504 aa28.99■■■□□ 2.23
UBE2D4-204ENST00000440899 ABCC9O60706 1549 aa25.94■■□□□ 1.74
UBE2D4-204ENST00000440899 CCDC180Q9P1Z9 1646 aa25.94■■□□□ 1.74
UBE2D4-204ENST00000440899 RB1CC1Q8TDY2 1594 aa24.71■■□□□ 1.55
UBE2D4-204ENST00000440899 NACADO15069 1562 aa24.57■■□□□ 1.52
UBE2D4-204ENST00000440899 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
UBE2D4-204ENST00000440899 DNAJC5BQ9UF47 199 aa24.33■■□□□ 1.49
UBE2D4-204ENST00000440899 MYO15BQ96JP2 1530 aa24.26■■□□□ 1.47
UBE2D4-204ENST00000440899 PABPN1Q86U42 306 aaKnown RBP eCLIP24.2■■□□□ 1.46
UBE2D4-204ENST00000440899 UNC13AQ9UPW8 1703 aa24.06■■□□□ 1.44
UBE2D4-204ENST00000440899 ZCCHC6Q5VYS8 1495 aaKnown RBP24.01■■□□□ 1.43
UBE2D4-204ENST00000440899 BICRAQ9NZM4 1560 aa23.97■■□□□ 1.43
UBE2D4-204ENST00000440899 DCAF1Q9Y4B6 1507 aa23.96■■□□□ 1.43
UBE2D4-204ENST00000440899 SHROOM4Q9ULL8 1493 aa23.69■■□□□ 1.38
UBE2D4-204ENST00000440899 SCRIBQ14160 1630 aa23.64■■□□□ 1.38
UBE2D4-204ENST00000440899 CC2D2AQ9P2K1 1620 aa23.41■■□□□ 1.34
UBE2D4-204ENST00000440899 EIF4G1Q04637 1599 aaKnown RBP23.39■■□□□ 1.33
UBE2D4-204ENST00000440899 CECR2Q9BXF3 1484 aa23.38■■□□□ 1.33
UBE2D4-204ENST00000440899 NCAPD3P42695 1498 aa22.71■■□□□ 1.23
UBE2D4-204ENST00000440899 ATAD2BQ9ULI0 1458 aa22.62■■□□□ 1.21
UBE2D4-204ENST00000440899 SMARCA4P51532 1647 aa22.57■■□□□ 1.2
UBE2D4-204ENST00000440899 SMARCA2P51531 1590 aa22.56■■□□□ 1.2
UBE2D4-204ENST00000440899 HMGXB3Q12766 1538 aa22.51■■□□□ 1.19
UBE2D4-204ENST00000440899 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
UBE2D4-204ENST00000440899 ERCC6Q03468 1493 aa22.42■■□□□ 1.18
UBE2D4-204ENST00000440899 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
UBE2D4-204ENST00000440899 PEG3Q9GZU2 1588 aa22.37■■□□□ 1.17
UBE2D4-204ENST00000440899 CUX2O14529 1486 aa22.36■■□□□ 1.17
UBE2D4-204ENST00000440899 DNAJC5Q9H3Z4 198 aa22.35■■□□□ 1.17
UBE2D4-204ENST00000440899 MROH2BQ7Z745 1585 aa22.33■■□□□ 1.16
UBE2D4-204ENST00000440899 NESP48681 1621 aa22.28■■□□□ 1.16
UBE2D4-204ENST00000440899 LAMC3Q9Y6N6 1575 aa22.16■■□□□ 1.14
UBE2D4-204ENST00000440899 PDS5BQ9NTI5 1447 aa22.07■■□□□ 1.12
UBE2D4-204ENST00000440899 CADPSQ9ULU8 1353 aa22.03■■□□□ 1.12
UBE2D4-204ENST00000440899 WIZO95785 1651 aa22.02■■□□□ 1.12
UBE2D4-204ENST00000440899 THOC2Q8NI27 1593 aaKnown RBP22.02■■□□□ 1.12
UBE2D4-204ENST00000440899 KIF21AQ7Z4S6 1674 aa21.95■■□□□ 1.1
UBE2D4-204ENST00000440899 RSF1Q96T23 1441 aaPredicted RBP21.91■■□□□ 1.1
UBE2D4-204ENST00000440899 MRC2Q9UBG0 1479 aa21.83■■□□□ 1.09
UBE2D4-204ENST00000440899 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.08
UBE2D4-204ENST00000440899 CFTRP13569 1480 aa21.77■■□□□ 1.07
UBE2D4-204ENST00000440899 CEP164Q9UPV0 1460 aa21.77■■□□□ 1.07
UBE2D4-204ENST00000440899 WDR62O43379 1518 aa21.75■■□□□ 1.07
UBE2D4-204ENST00000440899 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
UBE2D4-204ENST00000440899 CCDC88BA6NC98 1476 aa21.56■■□□□ 1.04
UBE2D4-204ENST00000440899 URB2Q14146 1524 aaKnown RBP21.55■■□□□ 1.04
UBE2D4-204ENST00000440899 PRDM2Q13029 1718 aa21.44■■□□□ 1.02
UBE2D4-204ENST00000440899 OSCARQ8IYS5 282 aa21.4■■□□□ 1.02
UBE2D4-204ENST00000440899 TRIM41Q8WV44 630 aa21.36■■□□□ 1.01
UBE2D4-204ENST00000440899 IFT140Q96RY7 1462 aa21.34■■□□□ 1.01
UBE2D4-204ENST00000440899 ABCC8Q09428 1581 aa21.33■■□□□ 1.01
UBE2D4-204ENST00000440899 TOPBP1Q92547 1522 aa21.33■■□□□ 1
UBE2D4-204ENST00000440899 ZNF608Q9ULD9 1512 aaPredicted RBP21.28■■□□□ 1
UBE2D4-204ENST00000440899 DNMBPQ6XZF7 1577 aa21.25■□□□□ 0.99
UBE2D4-204ENST00000440899 EIF4G3O43432 1585 aaKnown RBP21.12■□□□□ 0.97
UBE2D4-204ENST00000440899 POLA1P09884 1462 aaPredicted RBP21.12■□□□□ 0.97
UBE2D4-204ENST00000440899 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
UBE2D4-204ENST00000440899 AQRO60306 1485 aaKnown RBP eCLIP21.11■□□□□ 0.97
UBE2D4-204ENST00000440899 SOGA1O94964 1423 aa21.06■□□□□ 0.96
UBE2D4-204ENST00000440899 RAD54L2Q9Y4B4 1467 aa21.04■□□□□ 0.96
UBE2D4-204ENST00000440899 RIMBP3CA6NJZ7 1639 aa21.02■□□□□ 0.96
UBE2D4-204ENST00000440899 RIMBP3BA6NNM3 1639 aa21.02■□□□□ 0.96
UBE2D4-204ENST00000440899 RIMBP3Q9UFD9 1639 aa21.02■□□□□ 0.96
UBE2D4-204ENST00000440899 TDRD9Q8NDG6 1382 aaKnown RBP21.01■□□□□ 0.95
UBE2D4-204ENST00000440899 SUPT5HO00267 1087 aaKnown RBP21.01■□□□□ 0.95
UBE2D4-204ENST00000440899 FBLN2P98095 1184 aa21.01■□□□□ 0.95
UBE2D4-204ENST00000440899 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
UBE2D4-204ENST00000440899 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
UBE2D4-204ENST00000440899 CUX1P39880 1505 aa20.97■□□□□ 0.95
UBE2D4-204ENST00000440899 CHD1O14646 1710 aa20.93■□□□□ 0.94
UBE2D4-204ENST00000440899 WDR97A6NE52 1622 aa20.92■□□□□ 0.94
UBE2D4-204ENST00000440899 CYB5RLQ6IPT4 315 aa20.89■□□□□ 0.93
UBE2D4-204ENST00000440899 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
UBE2D4-204ENST00000440899 CHMP7Q8WUX9 453 aaPredicted RBP20.87■□□□□ 0.93
UBE2D4-204ENST00000440899 GRIN2BQ13224 1484 aa20.86■□□□□ 0.93
UBE2D4-204ENST00000440899 MAGI1Q96QZ7 1491 aaPredicted RBP20.85■□□□□ 0.93
UBE2D4-204ENST00000440899 GAPVD1Q14C86 1478 aa20.79■□□□□ 0.92
UBE2D4-204ENST00000440899 SYNJ2O15056 1496 aa20.78■□□□□ 0.92
UBE2D4-204ENST00000440899 ARAP1Q96P48 1450 aa20.78■□□□□ 0.92
UBE2D4-204ENST00000440899 ABCA10Q8WWZ4 1543 aa20.77■□□□□ 0.92
UBE2D4-204ENST00000440899 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
UBE2D4-204ENST00000440899 CLASP1Q7Z460 1538 aa20.74■□□□□ 0.91
UBE2D4-204ENST00000440899 WRNQ14191 1432 aaPredicted RBP eCLIP20.73■□□□□ 0.91
UBE2D4-204ENST00000440899 ABCA5Q8WWZ7 1642 aa20.68■□□□□ 0.9
UBE2D4-204ENST00000440899 PBRM1Q86U86 1689 aa20.68■□□□□ 0.9
UBE2D4-204ENST00000440899 TRHP20396 242 aaPredicted RBP20.65■□□□□ 0.9
UBE2D4-204ENST00000440899 TOP2BQ02880 1626 aa20.64■□□□□ 0.9
UBE2D4-204ENST00000440899 BIVM-ERCC5R4GMW8 1640 aa20.62■□□□□ 0.89
UBE2D4-204ENST00000440899 GRIN2AQ12879 1464 aa20.56■□□□□ 0.88
UBE2D4-204ENST00000440899 FHAD1B1AJZ9 1412 aa20.53■□□□□ 0.88
UBE2D4-204ENST00000440899 ADAMTS12P58397 1594 aa20.52■□□□□ 0.88
UBE2D4-204ENST00000440899 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
UBE2D4-204ENST00000440899 NUP160Q12769 1436 aa20.51■□□□□ 0.87
UBE2D4-204ENST00000440899 CEP170Q5SW79 1584 aa20.46■□□□□ 0.87
UBE2D4-204ENST00000440899 ERCC6L2Q5T890 1561 aa20.41■□□□□ 0.86
UBE2D4-204ENST00000440899 SHROOM2Q13796 1616 aa20.37■□□□□ 0.85
UBE2D4-204ENST00000440899 JPH4Q96JJ6 628 aa20.36■□□□□ 0.85
UBE2D4-204ENST00000440899 PRG4Q92954 1404 aaPredicted RBP20.33■□□□□ 0.84
UBE2D4-204ENST00000440899 IGF1RP08069 1367 aa20.3■□□□□ 0.84
UBE2D4-204ENST00000440899 KIF27Q86VH2 1401 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms