RNA–Protein interactions for RNA: ENST00000440447.2

PTX4-202, Transcript of pentraxin 4, humanhuman

TSL 5 BASIC

Gene PTX4, Length 1,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4-202ENST00000440447 NISCHQ9Y2I1 1504 aa43.74■■■■■ 4.59
PTX4-202ENST00000440447 CCDC180Q9P1Z9 1646 aa38.71■■■■□ 3.79
PTX4-202ENST00000440447 ABCC9O60706 1549 aa37.71■■■■□ 3.63
PTX4-202ENST00000440447 DCAF8L2P0C7V8 631 aa36.56■■■■□ 3.44
PTX4-202ENST00000440447 ZCCHC6Q5VYS8 1495 aaKnown RBP36.49■■■■□ 3.43
PTX4-202ENST00000440447 NACADO15069 1562 aa36.39■■■■□ 3.42
PTX4-202ENST00000440447 RB1CC1Q8TDY2 1594 aa36.36■■■■□ 3.41
PTX4-202ENST00000440447 MYO15BQ96JP2 1530 aa36.25■■■■□ 3.39
PTX4-202ENST00000440447 DCAF1Q9Y4B6 1507 aa36.19■■■■□ 3.38
PTX4-202ENST00000440447 UNC13AQ9UPW8 1703 aa35.43■■■■□ 3.26
PTX4-202ENST00000440447 SCRIBQ14160 1630 aa35.39■■■■□ 3.26
PTX4-202ENST00000440447 PABPN1Q86U42 306 aaKnown RBP eCLIP35.32■■■■□ 3.24
PTX4-202ENST00000440447 BICRAQ9NZM4 1560 aa35.21■■■■□ 3.23
PTX4-202ENST00000440447 SHROOM4Q9ULL8 1493 aa34.9■■■■□ 3.18
PTX4-202ENST00000440447 DNAJC5BQ9UF47 199 aa34.36■■■■□ 3.09
PTX4-202ENST00000440447 EIF4G1Q04637 1599 aaKnown RBP34.28■■■■□ 3.08
PTX4-202ENST00000440447 CC2D2AQ9P2K1 1620 aa34.08■■■■□ 3.05
PTX4-202ENST00000440447 CECR2Q9BXF3 1484 aa34.05■■■■□ 3.04
PTX4-202ENST00000440447 BAZ1AQ9NRL2 1556 aaPredicted RBP33.89■■■■□ 3.02
PTX4-202ENST00000440447 SMARCA4P51532 1647 aa33.86■■■■□ 3.01
PTX4-202ENST00000440447 MROH2BQ7Z745 1585 aa33.71■■■□□ 2.99
PTX4-202ENST00000440447 ATAD2BQ9ULI0 1458 aa33.65■■■□□ 2.98
PTX4-202ENST00000440447 SMARCA2P51531 1590 aa33.61■■■□□ 2.97
PTX4-202ENST00000440447 NCAPD3P42695 1498 aa33.59■■■□□ 2.97
PTX4-202ENST00000440447 PEG3Q9GZU2 1588 aa33.51■■■□□ 2.96
PTX4-202ENST00000440447 RSF1Q96T23 1441 aaPredicted RBP33.45■■■□□ 2.94
PTX4-202ENST00000440447 HMGXB3Q12766 1538 aa33.42■■■□□ 2.94
PTX4-202ENST00000440447 BAZ1BQ9UIG0 1483 aaKnown RBP33.4■■■□□ 2.94
PTX4-202ENST00000440447 WIZO95785 1651 aa33.34■■■□□ 2.93
PTX4-202ENST00000440447 TOP2AP11388 1531 aaKnown RBP33.02■■■□□ 2.88
PTX4-202ENST00000440447 SUPT5HO00267 1087 aaKnown RBP32.88■■■□□ 2.85
PTX4-202ENST00000440447 NESP48681 1621 aa32.68■■■□□ 2.82
PTX4-202ENST00000440447 CCDC88BA6NC98 1476 aa32.67■■■□□ 2.82
PTX4-202ENST00000440447 CADPSQ9ULU8 1353 aa32.65■■■□□ 2.82
PTX4-202ENST00000440447 LAMC3Q9Y6N6 1575 aa32.64■■■□□ 2.82
PTX4-202ENST00000440447 ERCC6Q03468 1493 aa32.5■■■□□ 2.79
PTX4-202ENST00000440447 CFTRP13569 1480 aa32.48■■■□□ 2.79
PTX4-202ENST00000440447 PDS5BQ9NTI5 1447 aa32.47■■■□□ 2.79
PTX4-202ENST00000440447 FANCD2Q9BXW9 1451 aa32.26■■■□□ 2.75
PTX4-202ENST00000440447 KIF21AQ7Z4S6 1674 aa32.24■■■□□ 2.75
PTX4-202ENST00000440447 CEP164Q9UPV0 1460 aa32.19■■■□□ 2.74
PTX4-202ENST00000440447 PRDM2Q13029 1718 aa32.15■■■□□ 2.74
PTX4-202ENST00000440447 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
PTX4-202ENST00000440447 MRC2Q9UBG0 1479 aa32.09■■■□□ 2.73
PTX4-202ENST00000440447 CUX2O14529 1486 aa32.03■■■□□ 2.72
PTX4-202ENST00000440447 WDR62O43379 1518 aa31.94■■■□□ 2.7
PTX4-202ENST00000440447 URB2Q14146 1524 aaKnown RBP31.9■■■□□ 2.7
PTX4-202ENST00000440447 ABCC8Q09428 1581 aa31.8■■■□□ 2.68
PTX4-202ENST00000440447 TOPBP1Q92547 1522 aa31.76■■■□□ 2.68
PTX4-202ENST00000440447 DNMBPQ6XZF7 1577 aa31.73■■■□□ 2.67
PTX4-202ENST00000440447 CUX1P39880 1505 aa31.6■■■□□ 2.65
PTX4-202ENST00000440447 WRNQ14191 1432 aaPredicted RBP eCLIP31.55■■■□□ 2.64
PTX4-202ENST00000440447 IFT140Q96RY7 1462 aa31.52■■■□□ 2.64
PTX4-202ENST00000440447 POLA1P09884 1462 aaPredicted RBP31.51■■■□□ 2.63
PTX4-202ENST00000440447 FGD5Q6ZNL6 1462 aa31.47■■■□□ 2.63
PTX4-202ENST00000440447 SOGA1O94964 1423 aa31.43■■■□□ 2.62
PTX4-202ENST00000440447 TOP2BQ02880 1626 aa31.4■■■□□ 2.62
PTX4-202ENST00000440447 SYNJ1O43426 1573 aa31.39■■■□□ 2.62
PTX4-202ENST00000440447 RAD54L2Q9Y4B4 1467 aa31.39■■■□□ 2.62
PTX4-202ENST00000440447 BIVM-ERCC5R4GMW8 1640 aa31.37■■■□□ 2.61
PTX4-202ENST00000440447 TARBP1Q13395 1621 aaKnown RBP31.35■■■□□ 2.61
PTX4-202ENST00000440447 ZNF608Q9ULD9 1512 aaPredicted RBP31.33■■■□□ 2.61
PTX4-202ENST00000440447 TDRD9Q8NDG6 1382 aaKnown RBP31.21■■■□□ 2.59
PTX4-202ENST00000440447 AQRO60306 1485 aaKnown RBP eCLIP31.21■■■□□ 2.59
PTX4-202ENST00000440447 ABCA10Q8WWZ4 1543 aa31.19■■■□□ 2.58
PTX4-202ENST00000440447 EIF4G3O43432 1585 aaKnown RBP31.18■■■□□ 2.58
PTX4-202ENST00000440447 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
PTX4-202ENST00000440447 TRIM41Q8WV44 630 aa31.05■■■□□ 2.56
PTX4-202ENST00000440447 GAPVD1Q14C86 1478 aa31.05■■■□□ 2.56
PTX4-202ENST00000440447 GRIN2BQ13224 1484 aa31.01■■■□□ 2.56
PTX4-202ENST00000440447 ABCA5Q8WWZ7 1642 aa30.99■■■□□ 2.55
PTX4-202ENST00000440447 SNAPC4Q5SXM2 1469 aa30.92■■■□□ 2.54
PTX4-202ENST00000440447 KIF27Q86VH2 1401 aa30.89■■■□□ 2.53
PTX4-202ENST00000440447 MAGI1Q96QZ7 1491 aaPredicted RBP30.89■■■□□ 2.53
PTX4-202ENST00000440447 PBRM1Q86U86 1689 aa30.88■■■□□ 2.53
PTX4-202ENST00000440447 FBLN2P98095 1184 aa30.85■■■□□ 2.53
PTX4-202ENST00000440447 CHIC1Q5VXU3 224 aa30.82■■■□□ 2.52
PTX4-202ENST00000440447 OSCARQ8IYS5 282 aa30.82■■■□□ 2.52
PTX4-202ENST00000440447 ERICH3Q5RHP9 1530 aa30.82■■■□□ 2.52
PTX4-202ENST00000440447 CHMP7Q8WUX9 453 aaPredicted RBP30.8■■■□□ 2.52
PTX4-202ENST00000440447 DNAJC5Q9H3Z4 198 aa30.77■■■□□ 2.52
PTX4-202ENST00000440447 SYNJ2O15056 1496 aa30.76■■■□□ 2.52
PTX4-202ENST00000440447 IGF1RP08069 1367 aa30.72■■■□□ 2.51
PTX4-202ENST00000440447 FHAD1B1AJZ9 1412 aa30.71■■■□□ 2.51
PTX4-202ENST00000440447 CHD1O14646 1710 aa30.7■■■□□ 2.51
PTX4-202ENST00000440447 ADAMTS12P58397 1594 aa30.69■■■□□ 2.5
PTX4-202ENST00000440447 RUSC2Q8N2Y8 1516 aa30.64■■■□□ 2.5
PTX4-202ENST00000440447 GRIN2AQ12879 1464 aa30.59■■■□□ 2.49
PTX4-202ENST00000440447 CUL7Q14999 1698 aa30.56■■■□□ 2.48
PTX4-202ENST00000440447 CARMIL1Q5VZK9 1371 aa30.55■■■□□ 2.48
PTX4-202ENST00000440447 EEA1Q15075 1411 aa30.47■■■□□ 2.47
PTX4-202ENST00000440447 NUP160Q12769 1436 aa30.44■■■□□ 2.46
PTX4-202ENST00000440447 CSRNP3Q8WYN3 585 aa30.43■■■□□ 2.46
PTX4-202ENST00000440447 CLASP1Q7Z460 1538 aa30.42■■■□□ 2.46
PTX4-202ENST00000440447 CEP170Q5SW79 1584 aa30.4■■■□□ 2.46
PTX4-202ENST00000440447 FAM9AQ8IZU1 332 aaPredicted RBP30.39■■■□□ 2.46
PTX4-202ENST00000440447 RAPGEF2Q9Y4G8 1499 aa30.38■■■□□ 2.45
PTX4-202ENST00000440447 PRXQ9BXM0 1461 aa30.32■■■□□ 2.44
PTX4-202ENST00000440447 ARHGEF11O15085 1522 aa30.24■■■□□ 2.43
PTX4-202ENST00000440447 KIAA0586Q9BVV6 1533 aa30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms