RNA–Protein interactions for RNA: ENST00000439987.6

IFT140-204, Transcript of intraflagellar transport 140, humanhuman

TSL 2

Gene IFT140, Length 2,580 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-204ENST00000439987 NISCHQ9Y2I1 1504 aa33.4■■■□□ 2.94
IFT140-204ENST00000439987 CCDC180Q9P1Z9 1646 aa29.01■■■□□ 2.23
IFT140-204ENST00000439987 ZCCHC6Q5VYS8 1495 aaKnown RBP28.09■■■□□ 2.09
IFT140-204ENST00000439987 DCAF1Q9Y4B6 1507 aa27.6■■■□□ 2.01
IFT140-204ENST00000439987 DCAF8L2P0C7V8 631 aa27.57■■■□□ 2
IFT140-204ENST00000439987 SHROOM4Q9ULL8 1493 aa27.41■■□□□ 1.98
IFT140-204ENST00000439987 ABCC9O60706 1549 aa27.33■■□□□ 1.97
IFT140-204ENST00000439987 MYO15BQ96JP2 1530 aa27.2■■□□□ 1.95
IFT140-204ENST00000439987 NACADO15069 1562 aa26.99■■□□□ 1.91
IFT140-204ENST00000439987 SCRIBQ14160 1630 aa26.74■■□□□ 1.87
IFT140-204ENST00000439987 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
IFT140-204ENST00000439987 SUPT5HO00267 1087 aaKnown RBP26.46■■□□□ 1.83
IFT140-204ENST00000439987 UNC13AQ9UPW8 1703 aa26.2■■□□□ 1.78
IFT140-204ENST00000439987 RSF1Q96T23 1441 aaPredicted RBP25.99■■□□□ 1.75
IFT140-204ENST00000439987 CECR2Q9BXF3 1484 aa25.96■■□□□ 1.75
IFT140-204ENST00000439987 BICRAQ9NZM4 1560 aa25.93■■□□□ 1.74
IFT140-204ENST00000439987 PABPN1Q86U42 306 aaKnown RBP eCLIP25.82■■□□□ 1.72
IFT140-204ENST00000439987 MROH2BQ7Z745 1585 aa25.82■■□□□ 1.72
IFT140-204ENST00000439987 BAZ1AQ9NRL2 1556 aaPredicted RBP25.77■■□□□ 1.72
IFT140-204ENST00000439987 SMARCA4P51532 1647 aa25.63■■□□□ 1.69
IFT140-204ENST00000439987 WIZO95785 1651 aa25.62■■□□□ 1.69
IFT140-204ENST00000439987 CHIC1Q5VXU3 224 aa25.41■■□□□ 1.66
IFT140-204ENST00000439987 TOP2AP11388 1531 aaKnown RBP25.34■■□□□ 1.65
IFT140-204ENST00000439987 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
IFT140-204ENST00000439987 ATAD2BQ9ULI0 1458 aa25.18■■□□□ 1.62
IFT140-204ENST00000439987 SMARCA2P51531 1590 aa25.15■■□□□ 1.62
IFT140-204ENST00000439987 EIF4G1Q04637 1599 aaKnown RBP25.13■■□□□ 1.61
IFT140-204ENST00000439987 CCDC88BA6NC98 1476 aa25.1■■□□□ 1.61
IFT140-204ENST00000439987 BAZ1BQ9UIG0 1483 aaKnown RBP25.05■■□□□ 1.6
IFT140-204ENST00000439987 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
IFT140-204ENST00000439987 HMGXB3Q12766 1538 aa24.9■■□□□ 1.58
IFT140-204ENST00000439987 TRIM41Q8WV44 630 aa24.86■■□□□ 1.57
IFT140-204ENST00000439987 CC2D2AQ9P2K1 1620 aa24.72■■□□□ 1.55
IFT140-204ENST00000439987 ABCC8Q09428 1581 aa24.64■■□□□ 1.54
IFT140-204ENST00000439987 LOC105371045A0A1W2PR82 267 aa24.46■■□□□ 1.51
IFT140-204ENST00000439987 WRNQ14191 1432 aaPredicted RBP eCLIP24.46■■□□□ 1.51
IFT140-204ENST00000439987 CFTRP13569 1480 aa24.43■■□□□ 1.5
IFT140-204ENST00000439987 FAM9AQ8IZU1 332 aaPredicted RBP24.42■■□□□ 1.5
IFT140-204ENST00000439987 SYNJ1O43426 1573 aa24.35■■□□□ 1.49
IFT140-204ENST00000439987 CADPSQ9ULU8 1353 aa24.31■■□□□ 1.48
IFT140-204ENST00000439987 PRDM2Q13029 1718 aa24.28■■□□□ 1.48
IFT140-204ENST00000439987 TOP2BQ02880 1626 aa24.23■■□□□ 1.47
IFT140-204ENST00000439987 SOGA1O94964 1423 aa24.22■■□□□ 1.47
IFT140-204ENST00000439987 BIVM-ERCC5R4GMW8 1640 aa24.19■■□□□ 1.46
IFT140-204ENST00000439987 EEA1Q15075 1411 aa24.18■■□□□ 1.46
IFT140-204ENST00000439987 CUX1P39880 1505 aa24.13■■□□□ 1.45
IFT140-204ENST00000439987 RUSC2Q8N2Y8 1516 aa24.12■■□□□ 1.45
IFT140-204ENST00000439987 DNAJC5BQ9UF47 199 aa24.08■■□□□ 1.45
IFT140-204ENST00000439987 EHMT2Q96KQ7 1210 aa24.08■■□□□ 1.45
IFT140-204ENST00000439987 CSRNP3Q8WYN3 585 aa24.05■■□□□ 1.44
IFT140-204ENST00000439987 NESP48681 1621 aa24.05■■□□□ 1.44
IFT140-204ENST00000439987 FANCD2Q9BXW9 1451 aa24.04■■□□□ 1.44
IFT140-204ENST00000439987 LAMC3Q9Y6N6 1575 aa24.04■■□□□ 1.44
IFT140-204ENST00000439987 GOLGA3Q08378 1498 aa23.87■■□□□ 1.41
IFT140-204ENST00000439987 CEP164Q9UPV0 1460 aa23.86■■□□□ 1.41
IFT140-204ENST00000439987 PDS5BQ9NTI5 1447 aa23.86■■□□□ 1.41
IFT140-204ENST00000439987 KIF21BO75037 1637 aa23.86■■□□□ 1.41
IFT140-204ENST00000439987 DNMBPQ6XZF7 1577 aa23.85■■□□□ 1.41
IFT140-204ENST00000439987 FGD5Q6ZNL6 1462 aa23.84■■□□□ 1.41
IFT140-204ENST00000439987 TNIKQ9UKE5 1360 aa23.83■■□□□ 1.41
IFT140-204ENST00000439987 KIF27Q86VH2 1401 aa23.82■■□□□ 1.4
IFT140-204ENST00000439987 TOPBP1Q92547 1522 aa23.8■■□□□ 1.4
IFT140-204ENST00000439987 UBTFP17480 764 aaKnown RBP23.77■■□□□ 1.4
IFT140-204ENST00000439987 KIF21AQ7Z4S6 1674 aa23.74■■□□□ 1.39
IFT140-204ENST00000439987 URB2Q14146 1524 aaKnown RBP23.73■■□□□ 1.39
IFT140-204ENST00000439987 CEP162Q5TB80 1403 aa23.72■■□□□ 1.39
IFT140-204ENST00000439987 CUX2O14529 1486 aa23.72■■□□□ 1.39
IFT140-204ENST00000439987 RAPGEF2Q9Y4G8 1499 aa23.72■■□□□ 1.39
IFT140-204ENST00000439987 POLA1P09884 1462 aaPredicted RBP23.7■■□□□ 1.39
IFT140-204ENST00000439987 PRXQ9BXM0 1461 aa23.7■■□□□ 1.39
IFT140-204ENST00000439987 ERICH3Q5RHP9 1530 aa23.67■■□□□ 1.38
IFT140-204ENST00000439987 RAD54L2Q9Y4B4 1467 aa23.63■■□□□ 1.37
IFT140-204ENST00000439987 ABCA10Q8WWZ4 1543 aa23.63■■□□□ 1.37
IFT140-204ENST00000439987 IGF1RP08069 1367 aa23.6■■□□□ 1.37
IFT140-204ENST00000439987 MRC2Q9UBG0 1479 aa23.54■■□□□ 1.36
IFT140-204ENST00000439987 PCGF6Q9BYE7 350 aa23.52■■□□□ 1.36
IFT140-204ENST00000439987 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
IFT140-204ENST00000439987 CLIP1P30622 1438 aa23.5■■□□□ 1.35
IFT140-204ENST00000439987 CARMIL1Q5VZK9 1371 aa23.48■■□□□ 1.35
IFT140-204ENST00000439987 TRIM26Q12899 539 aaPredicted RBP23.46■■□□□ 1.35
IFT140-204ENST00000439987 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
IFT140-204ENST00000439987 ABCA5Q8WWZ7 1642 aa23.41■■□□□ 1.34
IFT140-204ENST00000439987 WDR62O43379 1518 aa23.41■■□□□ 1.34
IFT140-204ENST00000439987 ERCC6Q03468 1493 aa23.4■■□□□ 1.34
IFT140-204ENST00000439987 TDRD9Q8NDG6 1382 aaKnown RBP23.39■■□□□ 1.34
IFT140-204ENST00000439987 CUL7Q14999 1698 aa23.38■■□□□ 1.33
IFT140-204ENST00000439987 GAPVD1Q14C86 1478 aa23.37■■□□□ 1.33
IFT140-204ENST00000439987 RANGAP1P46060 587 aaPredicted RBP23.35■■□□□ 1.33
IFT140-204ENST00000439987 VPS8Q8N3P4 1428 aa23.32■■□□□ 1.32
IFT140-204ENST00000439987 PPARGC1BQ86YN6 1023 aaKnown RBP23.3■■□□□ 1.32
IFT140-204ENST00000439987 THOC2Q8NI27 1593 aaKnown RBP23.3■■□□□ 1.32
IFT140-204ENST00000439987 IFT140Q96RY7 1462 aa23.28■■□□□ 1.32
IFT140-204ENST00000439987 ARAP1Q96P48 1450 aa23.25■■□□□ 1.31
IFT140-204ENST00000439987 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.311e-6■■■■□ 25.5
IFT140-204ENST00000439987 ARHGAP35Q9NRY4 1499 aa23.21■■□□□ 1.31
IFT140-204ENST00000439987 PBRM1Q86U86 1689 aa23.21■■□□□ 1.31
IFT140-204ENST00000439987 ZNF608Q9ULD9 1512 aaPredicted RBP23.17■■□□□ 1.3
IFT140-204ENST00000439987 GRIN2BQ13224 1484 aa23.15■■□□□ 1.3
IFT140-204ENST00000439987 CTTNBP2Q8WZ74 1663 aa23.14■■□□□ 1.29
IFT140-204ENST00000439987 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms