RNA–Protein interactions for RNA: ENST00000437516.1

HLA-N-201, Transcript of major histocompatibility complex, class I, N (pseudogene), humanhuman

BASIC

Gene HLA-N, Length 135 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-N-201ENST00000437516 NISCHQ9Y2I1 1504 aa8.64□□□□□ -1.03
HLA-N-201ENST00000437516 SHROOM4Q9ULL8 1493 aa7.36□□□□□ -1.23
HLA-N-201ENST00000437516 ZCCHC6Q5VYS8 1495 aaKnown RBP7.33□□□□□ -1.24
HLA-N-201ENST00000437516 CCDC180Q9P1Z9 1646 aa7.3□□□□□ -1.24
HLA-N-201ENST00000437516 DNAJC5Q9H3Z4 198 aa7.3□□□□□ -1.24
HLA-N-201ENST00000437516 SUPT5HO00267 1087 aaKnown RBP7.28□□□□□ -1.24
HLA-N-201ENST00000437516 CHIC1Q5VXU3 224 aa7.18□□□□□ -1.26
HLA-N-201ENST00000437516 DCAF1Q9Y4B6 1507 aa7.13□□□□□ -1.27
HLA-N-201ENST00000437516 HRCP23327 699 aa7.13□□□□□ -1.27
HLA-N-201ENST00000437516 MYO15BQ96JP2 1530 aa7.12□□□□□ -1.27
HLA-N-201ENST00000437516 DCAF8L2P0C7V8 631 aa7.06□□□□□ -1.28
HLA-N-201ENST00000437516 PCGF6Q9BYE7 350 aa7.01□□□□□ -1.29
HLA-N-201ENST00000437516 LOC105371045A0A1W2PR82 267 aa6.92□□□□□ -1.3
HLA-N-201ENST00000437516 TRIM26Q12899 539 aaPredicted RBP6.92□□□□□ -1.3
HLA-N-201ENST00000437516 ABCC9O60706 1549 aa6.91□□□□□ -1.3
HLA-N-201ENST00000437516 PPARGC1BQ86YN6 1023 aaKnown RBP6.9□□□□□ -1.3
HLA-N-201ENST00000437516 ZEB1P37275 1124 aaPredicted RBP6.87□□□□□ -1.31
HLA-N-201ENST00000437516 RSF1Q96T23 1441 aaPredicted RBP6.86□□□□□ -1.31
HLA-N-201ENST00000437516 RB1CC1Q8TDY2 1594 aa6.82□□□□□ -1.32
HLA-N-201ENST00000437516 TRIM41Q8WV44 630 aa6.81□□□□□ -1.32
HLA-N-201ENST00000437516 SCRIBQ14160 1630 aa6.8□□□□□ -1.32
HLA-N-201ENST00000437516 DNAJC5BQ9UF47 199 aa6.8□□□□□ -1.32
HLA-N-201ENST00000437516 NACADO15069 1562 aa6.74□□□□□ -1.33
HLA-N-201ENST00000437516 FAM9AQ8IZU1 332 aaPredicted RBP6.71□□□□□ -1.34
HLA-N-201ENST00000437516 MROH2BQ7Z745 1585 aa6.7□□□□□ -1.34
HLA-N-201ENST00000437516 CECR2Q9BXF3 1484 aa6.7□□□□□ -1.34
HLA-N-201ENST00000437516 PELP1Q8IZL8 1130 aaKnown RBP6.69□□□□□ -1.34
HLA-N-201ENST00000437516 BAZ1AQ9NRL2 1556 aaPredicted RBP6.65□□□□□ -1.34
HLA-N-201ENST00000437516 WIZO95785 1651 aa6.65□□□□□ -1.35
HLA-N-201ENST00000437516 EIF4G1Q04637 1599 aaKnown RBP6.63□□□□□ -1.35
HLA-N-201ENST00000437516 EHMT2Q96KQ7 1210 aa6.61□□□□□ -1.35
HLA-N-201ENST00000437516 WRNQ14191 1432 aaPredicted RBP eCLIP6.6□□□□□ -1.35
HLA-N-201ENST00000437516 SCAF1Q9H7N4 1312 aaKnown RBP6.59□□□□□ -1.35
HLA-N-201ENST00000437516 TOP2AP11388 1531 aaKnown RBP6.59□□□□□ -1.35
HLA-N-201ENST00000437516 CCER1Q8TC90 406 aaPredicted RBP6.58□□□□□ -1.36
HLA-N-201ENST00000437516 EEA1Q15075 1411 aa6.57□□□□□ -1.36
HLA-N-201ENST00000437516 TNIKQ9UKE5 1360 aa6.57□□□□□ -1.36
HLA-N-201ENST00000437516 ACIN1Q9UKV3 1341 aaKnown RBP6.55□□□□□ -1.36
HLA-N-201ENST00000437516 CCDC88BA6NC98 1476 aa6.55□□□□□ -1.36
HLA-N-201ENST00000437516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.55□□□□□ -1.36
HLA-N-201ENST00000437516 SMARCA2P51531 1590 aa6.54□□□□□ -1.36
HLA-N-201ENST00000437516 SMARCA4P51532 1647 aa6.54□□□□□ -1.36
HLA-N-201ENST00000437516 CEP162Q5TB80 1403 aa6.53□□□□□ -1.36
HLA-N-201ENST00000437516 ILDR1Q86SU0 546 aaPredicted RBP6.53□□□□□ -1.36
HLA-N-201ENST00000437516 CSRNP3Q8WYN3 585 aa6.52□□□□□ -1.37
HLA-N-201ENST00000437516 ABCC8Q09428 1581 aa6.52□□□□□ -1.37
HLA-N-201ENST00000437516 CENPBP07199 599 aaPredicted RBP6.51□□□□□ -1.37
HLA-N-201ENST00000437516 DIEXFQ68CQ4 756 aaKnown RBP6.51□□□□□ -1.37
HLA-N-201ENST00000437516 SOGA1O94964 1423 aa6.5□□□□□ -1.37
HLA-N-201ENST00000437516 GOLGA3Q08378 1498 aa6.49□□□□□ -1.37
HLA-N-201ENST00000437516 NEUROD1Q13562 356 aa6.49□□□□□ -1.37
HLA-N-201ENST00000437516 ZNF316A6NFI3 1004 aaPredicted RBP6.48□□□□□ -1.37
HLA-N-201ENST00000437516 RUSC2Q8N2Y8 1516 aa6.46□□□□□ -1.37
HLA-N-201ENST00000437516 UBTFP17480 764 aaKnown RBP6.46□□□□□ -1.38
HLA-N-201ENST00000437516 CEP164Q9UPV0 1460 aa6.45□□□□□ -1.38
HLA-N-201ENST00000437516 GTF3C3Q9Y5Q9 886 aa6.44□□□□□ -1.38
HLA-N-201ENST00000437516 PEG3Q9GZU2 1588 aa6.44□□□□□ -1.38
HLA-N-201ENST00000437516 KIF21BO75037 1637 aa6.43□□□□□ -1.38
HLA-N-201ENST00000437516 TTBK1Q5TCY1 1321 aaPredicted RBP6.42□□□□□ -1.38
HLA-N-201ENST00000437516 BAZ1BQ9UIG0 1483 aaKnown RBP6.41□□□□□ -1.38
HLA-N-201ENST00000437516 MYT1Q01538 1121 aa6.41□□□□□ -1.38
HLA-N-201ENST00000437516 UNC13AQ9UPW8 1703 aa6.4□□□□□ -1.38
HLA-N-201ENST00000437516 CLIP1P30622 1438 aa6.4□□□□□ -1.39
HLA-N-201ENST00000437516 VPS8Q8N3P4 1428 aa6.4□□□□□ -1.39
HLA-N-201ENST00000437516 BICRAQ9NZM4 1560 aa6.4□□□□□ -1.39
HLA-N-201ENST00000437516 APLP2Q06481 763 aa6.38□□□□□ -1.39
HLA-N-201ENST00000437516 SYNJ1O43426 1573 aa6.38□□□□□ -1.39
HLA-N-201ENST00000437516 ATAD2BQ9ULI0 1458 aa6.36□□□□□ -1.39
HLA-N-201ENST00000437516 CLSPNQ9HAW4 1339 aa6.36□□□□□ -1.39
HLA-N-201ENST00000437516 HNRNPUL2Q1KMD3 747 aaKnown RBP6.36□□□□□ -1.39
HLA-N-201ENST00000437516 PABPN1Q86U42 306 aaKnown RBP eCLIP6.35□□□□□ -1.39
HLA-N-201ENST00000437516 MIER1Q8N108 512 aa6.35□□□□□ -1.39
HLA-N-201ENST00000437516 RAPGEF2Q9Y4G8 1499 aa6.34□□□□□ -1.4
HLA-N-201ENST00000437516 TOP2BQ02880 1626 aa6.32□□□□□ -1.4
HLA-N-201ENST00000437516 ERICH3Q5RHP9 1530 aa6.32□□□□□ -1.4
HLA-N-201ENST00000437516 AEBP2Q6ZN18 517 aaPredicted RBP6.31□□□□□ -1.4
HLA-N-201ENST00000437516 YTHDC1Q96MU7 727 aaKnown RBP6.31□□□□□ -1.4
HLA-N-201ENST00000437516 BIVM-ERCC5R4GMW8 1640 aa6.31□□□□□ -1.4
HLA-N-201ENST00000437516 PRXQ9BXM0 1461 aa6.3□□□□□ -1.4
HLA-N-201ENST00000437516 DHX57Q6P158 1386 aaKnown RBP6.3□□□□□ -1.4
HLA-N-201ENST00000437516 ARAP1Q96P48 1450 aa6.29□□□□□ -1.4
HLA-N-201ENST00000437516 RRBP1Q9P2E9 1410 aaKnown RBP6.27□□□□□ -1.41
HLA-N-201ENST00000437516 CUX2O14529 1486 aa6.27□□□□□ -1.41
HLA-N-201ENST00000437516 RANGAP1P46060 587 aaPredicted RBP6.25□□□□□ -1.41
HLA-N-201ENST00000437516 HMGXB3Q12766 1538 aa6.25□□□□□ -1.41
HLA-N-201ENST00000437516 KIF27Q86VH2 1401 aa6.25□□□□□ -1.41
HLA-N-201ENST00000437516 NCAPD3P42695 1498 aa6.24□□□□□ -1.41
HLA-N-201ENST00000437516 KANK4Q5T7N3 995 aaPredicted RBP6.24□□□□□ -1.41
HLA-N-201ENST00000437516 CUX1P39880 1505 aa6.23□□□□□ -1.41
HLA-N-201ENST00000437516 CCNB3Q8WWL7 1395 aa6.22□□□□□ -1.41
HLA-N-201ENST00000437516 MAP3K1Q13233 1512 aa6.22□□□□□ -1.41
HLA-N-201ENST00000437516 ARHGAP35Q9NRY4 1499 aa6.22□□□□□ -1.41
HLA-N-201ENST00000437516 CFTRP13569 1480 aa6.21□□□□□ -1.42
HLA-N-201ENST00000437516 SUPT16HQ9Y5B9 1047 aaKnown RBP6.19□□□□□ -1.42
HLA-N-201ENST00000437516 IGF1RP08069 1367 aa6.18□□□□□ -1.42
HLA-N-201ENST00000437516 SETD5Q9C0A6 1442 aa6.17□□□□□ -1.42
HLA-N-201ENST00000437516 TIMELESSQ9UNS1 1208 aa6.17□□□□□ -1.42
HLA-N-201ENST00000437516 TIAM1Q13009 1591 aa6.17□□□□□ -1.42
HLA-N-201ENST00000437516 RAB3GAP2Q9H2M9 1393 aa6.17□□□□□ -1.42
HLA-N-201ENST00000437516 MAPKBP1O60336 1514 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms