RNA–Protein interactions for RNA: ENST00000433257.5

DDX56-205, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-205ENST00000433257 NISCHQ9Y2I1 1504 aa30.99■■■□□ 2.55
DDX56-205ENST00000433257 CCDC180Q9P1Z9 1646 aa27.39■■□□□ 1.98
DDX56-205ENST00000433257 ABCC9O60706 1549 aa26.67■■□□□ 1.86
DDX56-205ENST00000433257 DCAF8L2P0C7V8 631 aa26.01■■□□□ 1.75
DDX56-205ENST00000433257 ZCCHC6Q5VYS8 1495 aaKnown RBP25.83■■□□□ 1.72
DDX56-205ENST00000433257 NACADO15069 1562 aa25.76■■□□□ 1.71
DDX56-205ENST00000433257 RB1CC1Q8TDY2 1594 aa25.73■■□□□ 1.71
DDX56-205ENST00000433257 MYO15BQ96JP2 1530 aa25.66■■□□□ 1.7
DDX56-205ENST00000433257 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
DDX56-205ENST00000433257 SCRIBQ14160 1630 aa25.05■■□□□ 1.6
DDX56-205ENST00000433257 UNC13AQ9UPW8 1703 aa25.05■■□□□ 1.6
DDX56-205ENST00000433257 PABPN1Q86U42 306 aaKnown RBP eCLIP25.03■■□□□ 1.66e-7■■■■□ 21.2
DDX56-205ENST00000433257 SHROOM4Q9ULL8 1493 aa24.97■■□□□ 1.59
DDX56-205ENST00000433257 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
DDX56-205ENST00000433257 SUPT5HO00267 1087 aaKnown RBP24.73■■□□□ 1.55
DDX56-205ENST00000433257 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
DDX56-205ENST00000433257 HRCP23327 699 aa24.34■■□□□ 1.49
DDX56-205ENST00000433257 DNAJC5BQ9UF47 199 aa24.27■■□□□ 1.48
DDX56-205ENST00000433257 EIF4G1Q04637 1599 aaKnown RBP24.25■■□□□ 1.47
DDX56-205ENST00000433257 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
DDX56-205ENST00000433257 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
DDX56-205ENST00000433257 BAZ1AQ9NRL2 1556 aaPredicted RBP24.01■■□□□ 1.43
DDX56-205ENST00000433257 SMARCA4P51532 1647 aa23.97■■□□□ 1.43
DDX56-205ENST00000433257 MROH2BQ7Z745 1585 aa23.88■■□□□ 1.41
DDX56-205ENST00000433257 PCGF6Q9BYE7 350 aa23.85■■□□□ 1.41
DDX56-205ENST00000433257 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
DDX56-205ENST00000433257 SMARCA2P51531 1590 aa23.8■■□□□ 1.4
DDX56-205ENST00000433257 NCAPD3P42695 1498 aa23.78■■□□□ 1.4
DDX56-205ENST00000433257 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
DDX56-205ENST00000433257 PEG3Q9GZU2 1588 aa23.72■■□□□ 1.39
DDX56-205ENST00000433257 BAZ1BQ9UIG0 1483 aaKnown RBP23.65■■□□□ 1.38
DDX56-205ENST00000433257 TRIM26Q12899 539 aaPredicted RBP23.64■■□□□ 1.38
DDX56-205ENST00000433257 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
DDX56-205ENST00000433257 WIZO95785 1651 aa23.63■■□□□ 1.37
DDX56-205ENST00000433257 ZEB1P37275 1124 aaPredicted RBP23.56■■□□□ 1.36
DDX56-205ENST00000433257 LOC105371045A0A1W2PR82 267 aa23.42■■□□□ 1.34
DDX56-205ENST00000433257 TOP2AP11388 1531 aaKnown RBP23.39■■□□□ 1.33
DDX56-205ENST00000433257 PPARGC1BQ86YN6 1023 aaKnown RBP23.31■■□□□ 1.32
DDX56-205ENST00000433257 TRIM41Q8WV44 630 aa23.25■■□□□ 1.31
DDX56-205ENST00000433257 CCDC88BA6NC98 1476 aa23.16■■□□□ 1.3
DDX56-205ENST00000433257 CADPSQ9ULU8 1353 aa23.14■■□□□ 1.29
DDX56-205ENST00000433257 NESP48681 1621 aa23.11■■□□□ 1.29
DDX56-205ENST00000433257 LAMC3Q9Y6N6 1575 aa23.1■■□□□ 1.29
DDX56-205ENST00000433257 PELP1Q8IZL8 1130 aaKnown RBP23.06■■□□□ 1.28
DDX56-205ENST00000433257 CFTRP13569 1480 aa23.01■■□□□ 1.27
DDX56-205ENST00000433257 ERCC6Q03468 1493 aa23.01■■□□□ 1.27
DDX56-205ENST00000433257 PDS5BQ9NTI5 1447 aa23.01■■□□□ 1.27
DDX56-205ENST00000433257 FANCD2Q9BXW9 1451 aa22.84■■□□□ 1.25
DDX56-205ENST00000433257 KIF21AQ7Z4S6 1674 aa22.8■■□□□ 1.24
DDX56-205ENST00000433257 CEP164Q9UPV0 1460 aa22.79■■□□□ 1.24
DDX56-205ENST00000433257 PRDM2Q13029 1718 aa22.76■■□□□ 1.23
DDX56-205ENST00000433257 FAM9AQ8IZU1 332 aaPredicted RBP22.74■■□□□ 1.23
DDX56-205ENST00000433257 MRC2Q9UBG0 1479 aa22.69■■□□□ 1.22
DDX56-205ENST00000433257 WRNQ14191 1432 aaPredicted RBP eCLIP22.67■■□□□ 1.22
DDX56-205ENST00000433257 THOC2Q8NI27 1593 aaKnown RBP22.65■■□□□ 1.22
DDX56-205ENST00000433257 EEA1Q15075 1411 aa22.63■■□□□ 1.21
DDX56-205ENST00000433257 CUX2O14529 1486 aa22.62■■□□□ 1.21
DDX56-205ENST00000433257 WDR62O43379 1518 aa22.57■■□□□ 1.2
DDX56-205ENST00000433257 URB2Q14146 1524 aaKnown RBP22.55■■□□□ 1.2
DDX56-205ENST00000433257 ABCC8Q09428 1581 aa22.55■■□□□ 1.2
DDX56-205ENST00000433257 TOPBP1Q92547 1522 aa22.48■■□□□ 1.19
DDX56-205ENST00000433257 TNIKQ9UKE5 1360 aa22.47■■□□□ 1.19
DDX56-205ENST00000433257 DNMBPQ6XZF7 1577 aa22.46■■□□□ 1.19
DDX56-205ENST00000433257 CCER1Q8TC90 406 aaPredicted RBP22.46■■□□□ 1.19
DDX56-205ENST00000433257 SCAF1Q9H7N4 1312 aaKnown RBP22.43■■□□□ 1.18
DDX56-205ENST00000433257 CEP162Q5TB80 1403 aa22.39■■□□□ 1.17
DDX56-205ENST00000433257 CUX1P39880 1505 aa22.38■■□□□ 1.17
DDX56-205ENST00000433257 CENPBP07199 599 aaPredicted RBP22.36■■□□□ 1.17
DDX56-205ENST00000433257 ACIN1Q9UKV3 1341 aaKnown RBP22.33■■□□□ 1.16
DDX56-205ENST00000433257 POLA1P09884 1462 aaPredicted RBP22.31■■□□□ 1.16
DDX56-205ENST00000433257 IFT140Q96RY7 1462 aa22.31■■□□□ 1.16
DDX56-205ENST00000433257 GOLGA3Q08378 1498 aa22.29■■□□□ 1.16
DDX56-205ENST00000433257 FGD5Q6ZNL6 1462 aa22.29■■□□□ 1.16
DDX56-205ENST00000433257 SOGA1O94964 1423 aa22.29■■□□□ 1.16
DDX56-205ENST00000433257 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.28■■□□□ 1.16
DDX56-205ENST00000433257 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
DDX56-205ENST00000433257 TOP2BQ02880 1626 aa22.26■■□□□ 1.15
DDX56-205ENST00000433257 SYNJ1O43426 1573 aa22.25■■□□□ 1.15
DDX56-205ENST00000433257 DIEXFQ68CQ4 756 aaKnown RBP22.23■■□□□ 1.15
DDX56-205ENST00000433257 CSRNP3Q8WYN3 585 aa22.23■■□□□ 1.15
DDX56-205ENST00000433257 RAD54L2Q9Y4B4 1467 aa22.23■■□□□ 1.15
DDX56-205ENST00000433257 BIVM-ERCC5R4GMW8 1640 aa22.22■■□□□ 1.15
DDX56-205ENST00000433257 MYT1Q01538 1121 aa22.2■■□□□ 1.14
DDX56-205ENST00000433257 KIF21BO75037 1637 aa22.19■■□□□ 1.14
DDX56-205ENST00000433257 TARBP1Q13395 1621 aaKnown RBP22.18■■□□□ 1.14
DDX56-205ENST00000433257 ZNF608Q9ULD9 1512 aaPredicted RBP22.15■■□□□ 1.14
DDX56-205ENST00000433257 TDRD9Q8NDG6 1382 aaKnown RBP22.13■■□□□ 1.13
DDX56-205ENST00000433257 AQRO60306 1485 aaKnown RBP eCLIP22.11■■□□□ 1.132e-7■■■■□ 22.4
DDX56-205ENST00000433257 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.13
DDX56-205ENST00000433257 ZNF316A6NFI3 1004 aaPredicted RBP22.07■■□□□ 1.12
DDX56-205ENST00000433257 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
DDX56-205ENST00000433257 NEUROD1Q13562 356 aa22.05■■□□□ 1.12
DDX56-205ENST00000433257 EIF4G3O43432 1585 aaKnown RBP22.05■■□□□ 1.12
DDX56-205ENST00000433257 WDR97A6NE52 1622 aa22.03■■□□□ 1.12
DDX56-205ENST00000433257 GAPVD1Q14C86 1478 aa22.01■■□□□ 1.11
DDX56-205ENST00000433257 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
DDX56-205ENST00000433257 VPS8Q8N3P4 1428 aa21.96■■□□□ 1.11
DDX56-205ENST00000433257 RUSC2Q8N2Y8 1516 aa21.95■■□□□ 1.1
DDX56-205ENST00000433257 CLIP1P30622 1438 aa21.93■■□□□ 1.1
DDX56-205ENST00000433257 GTF3C3Q9Y5Q9 886 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms