RNA–Protein interactions for RNA: ENST00000430841.6

ECHDC1-207, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ECHDC1, Length 1,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-207ENST00000430841 AEBP2Q6ZN18 517 aaPredicted RBP26.76■■□□□ 1.87
ECHDC1-207ENST00000430841 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
ECHDC1-207ENST00000430841 SENP3Q9H4L4 574 aaPredicted RBP22.58■■□□□ 1.21
ECHDC1-207ENST00000430841 PHF23Q9BUL5 403 aaPredicted RBP22.35■■□□□ 1.17
ECHDC1-207ENST00000430841 FOXD1Q16676 465 aa21.33■■□□□ 1.01
ECHDC1-207ENST00000430841 POTEDQ86YR6 584 aa20.71■□□□□ 0.91
ECHDC1-207ENST00000430841 MSH5O43196 834 aa19.94■□□□□ 0.78
ECHDC1-207ENST00000430841 NISCHQ9Y2I1 1504 aa19.68■□□□□ 0.74
ECHDC1-207ENST00000430841 PIAS4Q8N2W9 510 aaPredicted RBP19.64■□□□□ 0.73
ECHDC1-207ENST00000430841 PPP6R1Q9UPN7 881 aa19.62■□□□□ 0.73
ECHDC1-207ENST00000430841 ADRA2BP18089 450 aa19.42■□□□□ 0.7
ECHDC1-207ENST00000430841 PLPPR3Q6T4P5 718 aa19.27■□□□□ 0.68
ECHDC1-207ENST00000430841 ABCC9O60706 1549 aa18.1■□□□□ 0.49
ECHDC1-207ENST00000430841 MAPK8IP2Q13387 824 aaPredicted RBP18.09■□□□□ 0.49
ECHDC1-207ENST00000430841 DMRT2Q9Y5R5 561 aa17.92■□□□□ 0.46
ECHDC1-207ENST00000430841 CCDC180Q9P1Z9 1646 aa17.87■□□□□ 0.45
ECHDC1-207ENST00000430841 CACNB1Q02641 598 aaPredicted RBP17.52■□□□□ 0.4
ECHDC1-207ENST00000430841 SCAF1Q9H7N4 1312 aaKnown RBP17.42■□□□□ 0.38
ECHDC1-207ENST00000430841 RB1CC1Q8TDY2 1594 aa17.17■□□□□ 0.34
ECHDC1-207ENST00000430841 RNF39Q9H2S5 420 aa17.13■□□□□ 0.33
ECHDC1-207ENST00000430841 DCAF8L1A6NGE4 600 aa17.06■□□□□ 0.32
ECHDC1-207ENST00000430841 HOXD11P31277 338 aaPredicted RBP17.04■□□□□ 0.32
ECHDC1-207ENST00000430841 DNAJC5BQ9UF47 199 aa17.01■□□□□ 0.31
ECHDC1-207ENST00000430841 NACADO15069 1562 aa16.94■□□□□ 0.3
ECHDC1-207ENST00000430841 PPP4R3CPQ6ZMV5 832 aa16.92■□□□□ 0.3
ECHDC1-207ENST00000430841 DCAF8L2P0C7V8 631 aa16.87■□□□□ 0.29
ECHDC1-207ENST00000430841 PABPN1Q86U42 306 aaKnown RBP eCLIP16.77■□□□□ 0.28
ECHDC1-207ENST00000430841 C1QBPQ07021 282 aaKnown RBP16.71■□□□□ 0.27
ECHDC1-207ENST00000430841 UNC13AQ9UPW8 1703 aa16.68■□□□□ 0.26
ECHDC1-207ENST00000430841 RNF216Q9NWF9 866 aaPredicted RBP16.68■□□□□ 0.26
ECHDC1-207ENST00000430841 CNKSR2Q8WXI2 1034 aa16.66■□□□□ 0.26
ECHDC1-207ENST00000430841 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
ECHDC1-207ENST00000430841 BICRAQ9NZM4 1560 aa16.51■□□□□ 0.23
ECHDC1-207ENST00000430841 SHROOM4Q9ULL8 1493 aa16.41■□□□□ 0.22
ECHDC1-207ENST00000430841 CECR2Q9BXF3 1484 aa16.35■□□□□ 0.21
ECHDC1-207ENST00000430841 CC2D2AQ9P2K1 1620 aa16.33■□□□□ 0.2
ECHDC1-207ENST00000430841 SCRIBQ14160 1630 aa16.28■□□□□ 0.2
ECHDC1-207ENST00000430841 ZCCHC6Q5VYS8 1495 aaKnown RBP16.26■□□□□ 0.19
ECHDC1-207ENST00000430841 DCAF1Q9Y4B6 1507 aa16.24■□□□□ 0.19
ECHDC1-207ENST00000430841 EIF4G1Q04637 1599 aaKnown RBP16.22■□□□□ 0.19
ECHDC1-207ENST00000430841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.09■□□□□ 0.172e-7■■■□□ 17
ECHDC1-207ENST00000430841 POTEHQ6S545 545 aa16.03■□□□□ 0.16
ECHDC1-207ENST00000430841 DNAJC5Q9H3Z4 198 aa15.93■□□□□ 0.14
ECHDC1-207ENST00000430841 NPM3O75607 178 aaKnown RBP15.91■□□□□ 0.14
ECHDC1-207ENST00000430841 U3KPZ7 1027 aaPredicted RBP15.87■□□□□ 0.13
ECHDC1-207ENST00000430841 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
ECHDC1-207ENST00000430841 DSG3P32926 999 aa15.85■□□□□ 0.13
ECHDC1-207ENST00000430841 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
ECHDC1-207ENST00000430841 ERCC6Q03468 1493 aa15.78■□□□□ 0.12
ECHDC1-207ENST00000430841 CUX2O14529 1486 aa15.75■□□□□ 0.11
ECHDC1-207ENST00000430841 CAPN15O75808 1086 aa15.65■□□□□ 0.1
ECHDC1-207ENST00000430841 NCAPD3P42695 1498 aa15.56■□□□□ 0.08
ECHDC1-207ENST00000430841 SMARCA2P51531 1590 aa15.53■□□□□ 0.08
ECHDC1-207ENST00000430841 HMGXB3Q12766 1538 aa15.5■□□□□ 0.07
ECHDC1-207ENST00000430841 ATAD2BQ9ULI0 1458 aa15.49■□□□□ 0.07
ECHDC1-207ENST00000430841 SMARCA4P51532 1647 aa15.46■□□□□ 0.06
ECHDC1-207ENST00000430841 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
ECHDC1-207ENST00000430841 BAZ1BQ9UIG0 1483 aaKnown RBP15.43■□□□□ 0.06
ECHDC1-207ENST00000430841 NESP48681 1621 aa15.41■□□□□ 0.06
ECHDC1-207ENST00000430841 BAZ1AQ9NRL2 1556 aaPredicted RBP15.37■□□□□ 0.05
ECHDC1-207ENST00000430841 ABCB7O75027 752 aa15.36■□□□□ 0.05
ECHDC1-207ENST00000430841 THOC2Q8NI27 1593 aaKnown RBP15.35■□□□□ 0.05
ECHDC1-207ENST00000430841 LAMC3Q9Y6N6 1575 aa15.35■□□□□ 0.05
ECHDC1-207ENST00000430841 TRHP20396 242 aaPredicted RBP15.3■□□□□ 0.04
ECHDC1-207ENST00000430841 PDS5BQ9NTI5 1447 aa15.3■□□□□ 0.04
ECHDC1-207ENST00000430841 TRIM41Q8WV44 630 aa15.28■□□□□ 0.04
ECHDC1-207ENST00000430841 KIF21AQ7Z4S6 1674 aa15.28■□□□□ 0.04
ECHDC1-207ENST00000430841 PEG3Q9GZU2 1588 aa15.24■□□□□ 0.03
ECHDC1-207ENST00000430841 MRC2Q9UBG0 1479 aa15.15■□□□□ 0.02
ECHDC1-207ENST00000430841 ZNF219Q9P2Y4 722 aaPredicted RBP15.14■□□□□ 0.01
ECHDC1-207ENST00000430841 MROH2BQ7Z745 1585 aa15.13■□□□□ 0.01
ECHDC1-207ENST00000430841 KCNA4P22459 653 aa15.11■□□□□ 0.01
ECHDC1-207ENST00000430841 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
ECHDC1-207ENST00000430841 WDR62O43379 1518 aa15.09■□□□□ 0.01
ECHDC1-207ENST00000430841 CEP164Q9UPV0 1460 aa15.08■□□□□ 0
ECHDC1-207ENST00000430841 FANCD2Q9BXW9 1451 aa14.99□□□□□ -0.01
ECHDC1-207ENST00000430841 WIZO95785 1651 aa14.98□□□□□ -0.01
ECHDC1-207ENST00000430841 CHRDL2Q6WN34 429 aa14.96□□□□□ -0.01
ECHDC1-207ENST00000430841 OSCARQ8IYS5 282 aa14.96□□□□□ -0.01
ECHDC1-207ENST00000430841 APLP2Q06481 763 aa14.94□□□□□ -0.02
ECHDC1-207ENST00000430841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.87□□□□□ -0.03
ECHDC1-207ENST00000430841 HNRNPUL2Q1KMD3 747 aaKnown RBP14.87□□□□□ -0.03
ECHDC1-207ENST00000430841 RBM42Q9BTD8 480 aaKnown RBP14.87□□□□□ -0.03
ECHDC1-207ENST00000430841 CFTRP13569 1480 aa14.86□□□□□ -0.03
ECHDC1-207ENST00000430841 SAMD1Q6SPF0 538 aaPredicted RBP14.85□□□□□ -0.03
ECHDC1-207ENST00000430841 TOP2AP11388 1531 aaKnown RBP14.82□□□□□ -0.04
ECHDC1-207ENST00000430841 URB2Q14146 1524 aaKnown RBP14.82□□□□□ -0.04
ECHDC1-207ENST00000430841 PRDM2Q13029 1718 aa14.81□□□□□ -0.04
ECHDC1-207ENST00000430841 POLA2Q14181 598 aa14.8□□□□□ -0.04
ECHDC1-207ENST00000430841 RIMBP3CA6NJZ7 1639 aa14.8□□□□□ -0.04
ECHDC1-207ENST00000430841 RIMBP3BA6NNM3 1639 aa14.8□□□□□ -0.04
ECHDC1-207ENST00000430841 RIMBP3Q9UFD9 1639 aa14.8□□□□□ -0.04
ECHDC1-207ENST00000430841 IFT140Q96RY7 1462 aa14.75□□□□□ -0.05
ECHDC1-207ENST00000430841 SP7Q8TDD2 431 aaPredicted RBP14.73□□□□□ -0.05
ECHDC1-207ENST00000430841 ARHGEF11O15085 1522 aa14.71□□□□□ -0.05
ECHDC1-207ENST00000430841 RSF1Q96T23 1441 aaPredicted RBP14.71□□□□□ -0.05
ECHDC1-207ENST00000430841 EIF4G3O43432 1585 aaKnown RBP14.67□□□□□ -0.06
ECHDC1-207ENST00000430841 ZNF608Q9ULD9 1512 aaPredicted RBP14.66□□□□□ -0.06
ECHDC1-207ENST00000430841 ABCC8Q09428 1581 aa14.66□□□□□ -0.06
ECHDC1-207ENST00000430841 TOPBP1Q92547 1522 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms