RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 NISCHQ9Y2I1 1504 aa42.81■■■■■ 4.44
CPSF4-203ENST00000430038 CCDC180Q9P1Z9 1646 aa38.25■■■■□ 3.71
CPSF4-203ENST00000430038 ABCC9O60706 1549 aa38.16■■■■□ 3.7
CPSF4-203ENST00000430038 RB1CC1Q8TDY2 1594 aa36.3■■■■□ 3.4
CPSF4-203ENST00000430038 NACADO15069 1562 aa36.1■■■■□ 3.37
CPSF4-203ENST00000430038 DCAF8L2P0C7V8 631 aa36.05■■■■□ 3.36
CPSF4-203ENST00000430038 DNAJC5BQ9UF47 199 aa35.79■■■■□ 3.32
CPSF4-203ENST00000430038 UNC13AQ9UPW8 1703 aa35.69■■■■□ 3.3
CPSF4-203ENST00000430038 MYO15BQ96JP2 1530 aa35.66■■■■□ 3.3
CPSF4-203ENST00000430038 PABPN1Q86U42 306 aaKnown RBP eCLIP35.61■■■■□ 3.29
CPSF4-203ENST00000430038 ZCCHC6Q5VYS8 1495 aaKnown RBP35.5■■■■□ 3.27
CPSF4-203ENST00000430038 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
CPSF4-203ENST00000430038 DCAF1Q9Y4B6 1507 aa35.3■■■■□ 3.24
CPSF4-203ENST00000430038 SCRIBQ14160 1630 aa34.95■■■■□ 3.18
CPSF4-203ENST00000430038 SHROOM4Q9ULL8 1493 aa34.68■■■■□ 3.14
CPSF4-203ENST00000430038 CC2D2AQ9P2K1 1620 aa34.48■■■■□ 3.11
CPSF4-203ENST00000430038 EIF4G1Q04637 1599 aaKnown RBP34.43■■■■□ 3.1
CPSF4-203ENST00000430038 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
CPSF4-203ENST00000430038 NCAPD3P42695 1498 aa33.38■■■□□ 2.93
CPSF4-203ENST00000430038 SMARCA4P51532 1647 aa33.35■■■□□ 2.93
CPSF4-203ENST00000430038 ATAD2BQ9ULI0 1458 aa33.33■■■□□ 2.93
CPSF4-203ENST00000430038 SMARCA2P51531 1590 aa33.16■■■□□ 2.9
CPSF4-203ENST00000430038 BAZ1AQ9NRL2 1556 aaPredicted RBP33.13■■■□□ 2.89
CPSF4-203ENST00000430038 HMGXB3Q12766 1538 aa33.1■■■□□ 2.89
CPSF4-203ENST00000430038 MROH2BQ7Z745 1585 aa33.05■■■□□ 2.88
CPSF4-203ENST00000430038 PEG3Q9GZU2 1588 aa33■■■□□ 2.87
CPSF4-203ENST00000430038 BAZ1BQ9UIG0 1483 aaKnown RBP32.95■■■□□ 2.87
CPSF4-203ENST00000430038 NESP48681 1621 aa32.91■■■□□ 2.86
CPSF4-203ENST00000430038 ERCC6Q03468 1493 aa32.8■■■□□ 2.84
CPSF4-203ENST00000430038 CUX2O14529 1486 aa32.68■■■□□ 2.82
CPSF4-203ENST00000430038 WIZO95785 1651 aa32.68■■■□□ 2.82
CPSF4-203ENST00000430038 DNAJC5Q9H3Z4 198 aa32.56■■■□□ 2.8
CPSF4-203ENST00000430038 LAMC3Q9Y6N6 1575 aa32.54■■■□□ 2.8
CPSF4-203ENST00000430038 KIF21AQ7Z4S6 1674 aa32.46■■■□□ 2.79
CPSF4-203ENST00000430038 THOC2Q8NI27 1593 aaKnown RBP32.45■■■□□ 2.79
CPSF4-203ENST00000430038 RSF1Q96T23 1441 aaPredicted RBP32.41■■■□□ 2.78
CPSF4-203ENST00000430038 CADPSQ9ULU8 1353 aa32.37■■■□□ 2.77
CPSF4-203ENST00000430038 PDS5BQ9NTI5 1447 aa32.32■■■□□ 2.76
CPSF4-203ENST00000430038 TOP2AP11388 1531 aaKnown RBP32.16■■■□□ 2.74
CPSF4-203ENST00000430038 MRC2Q9UBG0 1479 aa32.07■■■□□ 2.72
CPSF4-203ENST00000430038 CFTRP13569 1480 aa32.05■■■□□ 2.72
CPSF4-203ENST00000430038 WDR62O43379 1518 aa32.01■■■□□ 2.72
CPSF4-203ENST00000430038 FANCD2Q9BXW9 1451 aa32■■■□□ 2.71
CPSF4-203ENST00000430038 CEP164Q9UPV0 1460 aa31.97■■■□□ 2.71
CPSF4-203ENST00000430038 CCDC88BA6NC98 1476 aa31.87■■■□□ 2.69
CPSF4-203ENST00000430038 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
CPSF4-203ENST00000430038 PRDM2Q13029 1718 aa31.75■■■□□ 2.67
CPSF4-203ENST00000430038 TOPBP1Q92547 1522 aa31.44■■■□□ 2.62
CPSF4-203ENST00000430038 ZNF608Q9ULD9 1512 aaPredicted RBP31.39■■■□□ 2.62
CPSF4-203ENST00000430038 IFT140Q96RY7 1462 aa31.33■■■□□ 2.61
CPSF4-203ENST00000430038 DNMBPQ6XZF7 1577 aa31.3■■■□□ 2.6
CPSF4-203ENST00000430038 OSCARQ8IYS5 282 aa31.27■■■□□ 2.6
CPSF4-203ENST00000430038 ABCC8Q09428 1581 aa31.26■■■□□ 2.59
CPSF4-203ENST00000430038 TRIM41Q8WV44 630 aa31.19■■■□□ 2.58
CPSF4-203ENST00000430038 TARBP1Q13395 1621 aaKnown RBP31.19■■■□□ 2.58
CPSF4-203ENST00000430038 EIF4G3O43432 1585 aaKnown RBP31.15■■■□□ 2.58
CPSF4-203ENST00000430038 POLA1P09884 1462 aaPredicted RBP31.14■■■□□ 2.57
CPSF4-203ENST00000430038 SUPT5HO00267 1087 aaKnown RBP31.13■■■□□ 2.57
CPSF4-203ENST00000430038 AQRO60306 1485 aaKnown RBP eCLIP31.12■■■□□ 2.573e-8■■■■■ 48.5
CPSF4-203ENST00000430038 RAD54L2Q9Y4B4 1467 aa31.08■■■□□ 2.57
CPSF4-203ENST00000430038 CUX1P39880 1505 aa31.02■■■□□ 2.56
CPSF4-203ENST00000430038 SOGA1O94964 1423 aa30.98■■■□□ 2.55
CPSF4-203ENST00000430038 FGD5Q6ZNL6 1462 aa30.96■■■□□ 2.55
CPSF4-203ENST00000430038 TDRD9Q8NDG6 1382 aaKnown RBP30.94■■■□□ 2.54
CPSF4-203ENST00000430038 CHD1O14646 1710 aa30.94■■■□□ 2.54
CPSF4-203ENST00000430038 RIMBP3CA6NJZ7 1639 aa30.91■■■□□ 2.54
CPSF4-203ENST00000430038 RIMBP3BA6NNM3 1639 aa30.91■■■□□ 2.54
CPSF4-203ENST00000430038 RIMBP3Q9UFD9 1639 aa30.91■■■□□ 2.54
CPSF4-203ENST00000430038 ARHGEF11O15085 1522 aa30.8■■■□□ 2.52
CPSF4-203ENST00000430038 FBLN2P98095 1184 aa30.8■■■□□ 2.52
CPSF4-203ENST00000430038 WDR97A6NE52 1622 aa30.76■■■□□ 2.52
CPSF4-203ENST00000430038 SNAPC4Q5SXM2 1469 aa30.74■■■□□ 2.51
CPSF4-203ENST00000430038 GRIN2BQ13224 1484 aa30.64■■■□□ 2.5
CPSF4-203ENST00000430038 PBRM1Q86U86 1689 aa30.61■■■□□ 2.49
CPSF4-203ENST00000430038 ABCA10Q8WWZ4 1543 aa30.6■■■□□ 2.49
CPSF4-203ENST00000430038 MAGI1Q96QZ7 1491 aaPredicted RBP30.6■■■□□ 2.49
CPSF4-203ENST00000430038 GAPVD1Q14C86 1478 aa30.59■■■□□ 2.49
CPSF4-203ENST00000430038 CYB5RLQ6IPT4 315 aa30.59■■■□□ 2.49
CPSF4-203ENST00000430038 CHMP7Q8WUX9 453 aaPredicted RBP30.57■■■□□ 2.48
CPSF4-203ENST00000430038 ABCA5Q8WWZ7 1642 aa30.57■■■□□ 2.48
CPSF4-203ENST00000430038 SYNJ1O43426 1573 aa30.55■■■□□ 2.48
CPSF4-203ENST00000430038 CLASP1Q7Z460 1538 aa30.55■■■□□ 2.48
CPSF4-203ENST00000430038 ARAP1Q96P48 1450 aa30.55■■■□□ 2.48
CPSF4-203ENST00000430038 SYNJ2O15056 1496 aa30.53■■■□□ 2.48
CPSF4-203ENST00000430038 BIVM-ERCC5R4GMW8 1640 aa30.53■■■□□ 2.48
CPSF4-203ENST00000430038 TOP2BQ02880 1626 aa30.52■■■□□ 2.48
CPSF4-203ENST00000430038 WRNQ14191 1432 aaPredicted RBP eCLIP30.49■■■□□ 2.47
CPSF4-203ENST00000430038 ADAMTS12P58397 1594 aa30.29■■■□□ 2.44
CPSF4-203ENST00000430038 GRIN2AQ12879 1464 aa30.28■■■□□ 2.44
CPSF4-203ENST00000430038 CEP170Q5SW79 1584 aa30.23■■■□□ 2.43
CPSF4-203ENST00000430038 ERCC6L2Q5T890 1561 aa30.2■■■□□ 2.43
CPSF4-203ENST00000430038 ERICH3Q5RHP9 1530 aa30.19■■■□□ 2.42
CPSF4-203ENST00000430038 FHAD1B1AJZ9 1412 aa30.19■■■□□ 2.42
CPSF4-203ENST00000430038 NUP160Q12769 1436 aa30.19■■■□□ 2.42
CPSF4-203ENST00000430038 TRHP20396 242 aaPredicted RBP30.11■■■□□ 2.41
CPSF4-203ENST00000430038 SHROOM2Q13796 1616 aa30.06■■■□□ 2.4
CPSF4-203ENST00000430038 IGF1RP08069 1367 aa29.95■■■□□ 2.39
CPSF4-203ENST00000430038 JPH4Q96JJ6 628 aa29.89■■■□□ 2.38
CPSF4-203ENST00000430038 PRG4Q92954 1404 aaPredicted RBP29.88■■■□□ 2.37
CPSF4-203ENST00000430038 RUSC2Q8N2Y8 1516 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms