RNA–Protein interactions for RNA: ENST00000428861.1

ATG4B-210, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-210ENST00000428861 NISCHQ9Y2I1 1504 aa26.34■■□□□ 1.81
ATG4B-210ENST00000428861 CCDC180Q9P1Z9 1646 aa23.37■■□□□ 1.33
ATG4B-210ENST00000428861 ABCC9O60706 1549 aa23.06■■□□□ 1.28
ATG4B-210ENST00000428861 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
ATG4B-210ENST00000428861 RB1CC1Q8TDY2 1594 aa22.04■■□□□ 1.12
ATG4B-210ENST00000428861 NACADO15069 1562 aa22.02■■□□□ 1.12
ATG4B-210ENST00000428861 ZCCHC6Q5VYS8 1495 aaKnown RBP21.93■■□□□ 1.1
ATG4B-210ENST00000428861 MYO15BQ96JP2 1530 aa21.85■■□□□ 1.09
ATG4B-210ENST00000428861 DCAF1Q9Y4B6 1507 aa21.75■■□□□ 1.07
ATG4B-210ENST00000428861 UNC13AQ9UPW8 1703 aa21.58■■□□□ 1.05
ATG4B-210ENST00000428861 PABPN1Q86U42 306 aaKnown RBP eCLIP21.58■■□□□ 1.05
ATG4B-210ENST00000428861 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
ATG4B-210ENST00000428861 SCRIBQ14160 1630 aa21.4■■□□□ 1.02
ATG4B-210ENST00000428861 DNAJC5BQ9UF47 199 aa21.34■■□□□ 1.01
ATG4B-210ENST00000428861 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
ATG4B-210ENST00000428861 EIF4G1Q04637 1599 aaKnown RBP20.89■□□□□ 0.93
ATG4B-210ENST00000428861 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
ATG4B-210ENST00000428861 CECR2Q9BXF3 1484 aa20.7■□□□□ 0.9
ATG4B-210ENST00000428861 SMARCA4P51532 1647 aa20.44■□□□□ 0.86
ATG4B-210ENST00000428861 ATAD2BQ9ULI0 1458 aa20.38■□□□□ 0.85
ATG4B-210ENST00000428861 BAZ1AQ9NRL2 1556 aaPredicted RBP20.38■□□□□ 0.85
ATG4B-210ENST00000428861 NCAPD3P42695 1498 aa20.37■□□□□ 0.85
ATG4B-210ENST00000428861 MROH2BQ7Z745 1585 aa20.34■□□□□ 0.85
ATG4B-210ENST00000428861 SMARCA2P51531 1590 aa20.28■□□□□ 0.84
ATG4B-210ENST00000428861 PEG3Q9GZU2 1588 aa20.23■□□□□ 0.83
ATG4B-210ENST00000428861 HMGXB3Q12766 1538 aa20.22■□□□□ 0.83
ATG4B-210ENST00000428861 BAZ1BQ9UIG0 1483 aaKnown RBP20.17■□□□□ 0.82
ATG4B-210ENST00000428861 WIZO95785 1651 aa20.1■□□□□ 0.81
ATG4B-210ENST00000428861 RSF1Q96T23 1441 aaPredicted RBP20.08■□□□□ 0.8
ATG4B-210ENST00000428861 NESP48681 1621 aa19.96■□□□□ 0.79
ATG4B-210ENST00000428861 TOP2AP11388 1531 aaKnown RBP19.84■□□□□ 0.77
ATG4B-210ENST00000428861 ERCC6Q03468 1493 aa19.81■□□□□ 0.76
ATG4B-210ENST00000428861 LAMC3Q9Y6N6 1575 aa19.78■□□□□ 0.76
ATG4B-210ENST00000428861 CADPSQ9ULU8 1353 aa19.77■□□□□ 0.76
ATG4B-210ENST00000428861 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
ATG4B-210ENST00000428861 CCDC88BA6NC98 1476 aa19.66■□□□□ 0.74
ATG4B-210ENST00000428861 KIF21AQ7Z4S6 1674 aa19.65■□□□□ 0.74
ATG4B-210ENST00000428861 CFTRP13569 1480 aa19.64■□□□□ 0.73
ATG4B-210ENST00000428861 CUX2O14529 1486 aa19.62■□□□□ 0.73
ATG4B-210ENST00000428861 THOC2Q8NI27 1593 aaKnown RBP19.61■□□□□ 0.73
ATG4B-210ENST00000428861 FANCD2Q9BXW9 1451 aa19.54■□□□□ 0.72
ATG4B-210ENST00000428861 SUPT5HO00267 1087 aaKnown RBP19.51■□□□□ 0.71
ATG4B-210ENST00000428861 MRC2Q9UBG0 1479 aa19.49■□□□□ 0.71
ATG4B-210ENST00000428861 CEP164Q9UPV0 1460 aa19.49■□□□□ 0.71
ATG4B-210ENST00000428861 WDR62O43379 1518 aa19.44■□□□□ 0.7
ATG4B-210ENST00000428861 PRDM2Q13029 1718 aa19.38■□□□□ 0.69
ATG4B-210ENST00000428861 URB2Q14146 1524 aaKnown RBP19.38■□□□□ 0.69
ATG4B-210ENST00000428861 TOPBP1Q92547 1522 aa19.22■□□□□ 0.67
ATG4B-210ENST00000428861 DNAJC5Q9H3Z4 198 aa19.18■□□□□ 0.66
ATG4B-210ENST00000428861 DNMBPQ6XZF7 1577 aa19.16■□□□□ 0.66
ATG4B-210ENST00000428861 ABCC8Q09428 1581 aa19.13■□□□□ 0.65
ATG4B-210ENST00000428861 IFT140Q96RY7 1462 aa19.09■□□□□ 0.65
ATG4B-210ENST00000428861 ZNF608Q9ULD9 1512 aaPredicted RBP19.09■□□□□ 0.65
ATG4B-210ENST00000428861 CUX1P39880 1505 aa19.07■□□□□ 0.64
ATG4B-210ENST00000428861 POLA1P09884 1462 aaPredicted RBP19.06■□□□□ 0.64
ATG4B-210ENST00000428861 RAD54L2Q9Y4B4 1467 aa19.03■□□□□ 0.64
ATG4B-210ENST00000428861 TARBP1Q13395 1621 aaKnown RBP19.02■□□□□ 0.64
ATG4B-210ENST00000428861 FGD5Q6ZNL6 1462 aa19■□□□□ 0.63
ATG4B-210ENST00000428861 SOGA1O94964 1423 aa18.97■□□□□ 0.63
ATG4B-210ENST00000428861 AQRO60306 1485 aaKnown RBP eCLIP18.97■□□□□ 0.632e-11■■■□□ 15.6
ATG4B-210ENST00000428861 EIF4G3O43432 1585 aaKnown RBP18.94■□□□□ 0.62
ATG4B-210ENST00000428861 TDRD9Q8NDG6 1382 aaKnown RBP18.92■□□□□ 0.62
ATG4B-210ENST00000428861 WRNQ14191 1432 aaPredicted RBP eCLIP18.89■□□□□ 0.61
ATG4B-210ENST00000428861 SYNJ1O43426 1573 aa18.88■□□□□ 0.61
ATG4B-210ENST00000428861 TOP2BQ02880 1626 aa18.84■□□□□ 0.61
ATG4B-210ENST00000428861 OSCARQ8IYS5 282 aa18.83■□□□□ 0.6
ATG4B-210ENST00000428861 WDR97A6NE52 1622 aa18.82■□□□□ 0.6
ATG4B-210ENST00000428861 BIVM-ERCC5R4GMW8 1640 aa18.82■□□□□ 0.6
ATG4B-210ENST00000428861 ABCA10Q8WWZ4 1543 aa18.79■□□□□ 0.6
ATG4B-210ENST00000428861 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
ATG4B-210ENST00000428861 GAPVD1Q14C86 1478 aa18.74■□□□□ 0.59
ATG4B-210ENST00000428861 GRIN2BQ13224 1484 aa18.73■□□□□ 0.59
ATG4B-210ENST00000428861 ABCA5Q8WWZ7 1642 aa18.72■□□□□ 0.59
ATG4B-210ENST00000428861 FBLN2P98095 1184 aa18.71■□□□□ 0.59
ATG4B-210ENST00000428861 CHD1O14646 1710 aa18.71■□□□□ 0.59
ATG4B-210ENST00000428861 MAGI1Q96QZ7 1491 aaPredicted RBP18.68■□□□□ 0.58
ATG4B-210ENST00000428861 PBRM1Q86U86 1689 aa18.67■□□□□ 0.58
ATG4B-210ENST00000428861 CHMP7Q8WUX9 453 aaPredicted RBP18.63■□□□□ 0.57
ATG4B-210ENST00000428861 SYNJ2O15056 1496 aa18.63■□□□□ 0.57
ATG4B-210ENST00000428861 ADAMTS12P58397 1594 aa18.55■□□□□ 0.56
ATG4B-210ENST00000428861 ERICH3Q5RHP9 1530 aa18.54■□□□□ 0.56
ATG4B-210ENST00000428861 RIMBP3CA6NJZ7 1639 aa18.54■□□□□ 0.56
ATG4B-210ENST00000428861 RIMBP3BA6NNM3 1639 aa18.54■□□□□ 0.56
ATG4B-210ENST00000428861 RIMBP3Q9UFD9 1639 aa18.54■□□□□ 0.56
ATG4B-210ENST00000428861 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
ATG4B-210ENST00000428861 CLASP1Q7Z460 1538 aa18.54■□□□□ 0.56
ATG4B-210ENST00000428861 TRIM41Q8WV44 630 aa18.53■□□□□ 0.56
ATG4B-210ENST00000428861 FHAD1B1AJZ9 1412 aa18.51■□□□□ 0.55
ATG4B-210ENST00000428861 GRIN2AQ12879 1464 aa18.51■□□□□ 0.55
ATG4B-210ENST00000428861 KIF27Q86VH2 1401 aa18.49■□□□□ 0.55
ATG4B-210ENST00000428861 IGF1RP08069 1367 aa18.48■□□□□ 0.55
ATG4B-210ENST00000428861 NUP160Q12769 1436 aa18.45■□□□□ 0.54
ATG4B-210ENST00000428861 CEP170Q5SW79 1584 aa18.44■□□□□ 0.54
ATG4B-210ENST00000428861 ARAP1Q96P48 1450 aa18.41■□□□□ 0.54
ATG4B-210ENST00000428861 RUSC2Q8N2Y8 1516 aa18.4■□□□□ 0.54
ATG4B-210ENST00000428861 CYB5RLQ6IPT4 315 aa18.39■□□□□ 0.53
ATG4B-210ENST00000428861 CARMIL1Q5VZK9 1371 aa18.34■□□□□ 0.53
ATG4B-210ENST00000428861 ERCC6L2Q5T890 1561 aa18.34■□□□□ 0.53
ATG4B-210ENST00000428861 CUL7Q14999 1698 aa18.32■□□□□ 0.52
ATG4B-210ENST00000428861 SHROOM2Q13796 1616 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms